RNA–Protein interactions for RNA: ENST00000343524.9

ATG4A-201, Transcript of autophagy related 4A cysteine peptidase, humanhuman

TSL 2

Gene ATG4A, Length 1,941 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4A-201ENST00000343524 C9orf66Q5T8R8 295 aa5.72□□□□□ -1.49
ATG4A-201ENST00000343524 C6orf223Q8N319 242 aa5.72□□□□□ -1.49
ATG4A-201ENST00000343524 TOMM7Q9P0U1 55 aa5.72□□□□□ -1.49
ATG4A-201ENST00000343524 FUSP35637 526 aaKnown RBP eCLIP5.71□□□□□ -1.5
ATG4A-201ENST00000343524 CD164Q04900 197 aa5.71□□□□□ -1.5
ATG4A-201ENST00000343524 Q6ZSN1 163 aa5.71□□□□□ -1.5
ATG4A-201ENST00000343524 TRAV10A0A0B4J240 114 aa5.7□□□□□ -1.5
ATG4A-201ENST00000343524 C11orf71Q6IPW1 123 aa5.7□□□□□ -1.5
ATG4A-201ENST00000343524 TMEM89A2RUT3 159 aa5.7□□□□□ -1.5
ATG4A-201ENST00000343524 IGHV4-38-2P0DP08 117 aa5.7□□□□□ -1.5
ATG4A-201ENST00000343524 HTN1P15515 57 aa5.7□□□□□ -1.5
ATG4A-201ENST00000343524 DEFB113Q30KQ7 82 aa5.7□□□□□ -1.5
ATG4A-201ENST00000343524 FBXL19-AS1Q494R0 122 aa5.7□□□□□ -1.5
ATG4A-201ENST00000343524 NTM-AS1Q6ZSK4 140 aa5.7□□□□□ -1.5
ATG4A-201ENST00000343524 MPLKIPQ8TAP9 179 aa5.7□□□□□ -1.5
ATG4A-201ENST00000343524 INSP01308 110 aa5.69□□□□□ -1.5
ATG4A-201ENST00000343524 Q96MF0 132 aa5.69□□□□□ -1.5
ATG4A-201ENST00000343524 LY6HO94772 140 aa5.68□□□□□ -1.5
ATG4A-201ENST00000343524 TLN2Q9Y4G6 2542 aa5.68□□□□□ -1.5
ATG4A-201ENST00000343524 A0A087WZ39 114 aa5.68□□□□□ -1.5
ATG4A-201ENST00000343524 BPY2O14599 106 aa5.68□□□□□ -1.5
ATG4A-201ENST00000343524 LCE4AQ5TA78 99 aa5.68□□□□□ -1.5
ATG4A-201ENST00000343524 TM2D3Q9BRN9 247 aa5.68□□□□□ -1.5
ATG4A-201ENST00000343524 VPS13CQ709C8 3753 aa5.68□□□□□ -1.5
ATG4A-201ENST00000343524 AKAP6Q13023 2319 aa5.67□□□□□ -1.5
ATG4A-201ENST00000343524 COX17Q14061 63 aa5.67□□□□□ -1.5
ATG4A-201ENST00000343524 Q1T7F1 81 aa5.67□□□□□ -1.5
ATG4A-201ENST00000343524 LINC01560Q8TB33 94 aa5.67□□□□□ -1.5
ATG4A-201ENST00000343524 Q9UF83 564 aa5.67□□□□□ -1.5
ATG4A-201ENST00000343524 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP5.67□□□□□ -1.5
ATG4A-201ENST00000343524 WNK2Q9Y3S1 2297 aa5.66□□□□□ -1.5
ATG4A-201ENST00000343524 KRTAP24-1Q3LI83 254 aa5.66□□□□□ -1.5
ATG4A-201ENST00000343524 Q6ZTI0 123 aa5.66□□□□□ -1.5
ATG4A-201ENST00000343524 MUC7Q8TAX7 377 aa5.66□□□□□ -1.5
ATG4A-201ENST00000343524 KRTAP17-1Q9BYP8 105 aa5.66□□□□□ -1.5
ATG4A-201ENST00000343524 BPESC1Q9GZL8 116 aa5.66□□□□□ -1.5
ATG4A-201ENST00000343524 IGHV3OR16-9A0A0B4J2B5 98 aa5.66□□□□□ -1.5
ATG4A-201ENST00000343524 A6NDX4 124 aa5.66□□□□□ -1.5
ATG4A-201ENST00000343524 LYRM9A8MSI8 78 aa5.66□□□□□ -1.5
ATG4A-201ENST00000343524 RNASE1P07998 156 aaKnown RBP5.66□□□□□ -1.5
ATG4A-201ENST00000343524 LINC00575Q6W349 94 aa5.66□□□□□ -1.5
ATG4A-201ENST00000343524 Q8IZM0 81 aa5.66□□□□□ -1.5
ATG4A-201ENST00000343524 ANK3Q12955 4377 aaKnown RBP5.66□□□□□ -1.5
ATG4A-201ENST00000343524 SONP18583 2426 aaKnown RBP5.65□□□□□ -1.5
ATG4A-201ENST00000343524 NBEAL2Q6ZNJ1 2754 aa5.65□□□□□ -1.5
ATG4A-201ENST00000343524 DAD1P61803 113 aa5.65□□□□□ -1.51
ATG4A-201ENST00000343524 FAM229BQ4G0N7 80 aa5.65□□□□□ -1.51
ATG4A-201ENST00000343524 LMO4P61968 165 aa5.64□□□□□ -1.51
ATG4A-201ENST00000343524 A0A096LNT2 108 aa5.64□□□□□ -1.51
ATG4A-201ENST00000343524 DEFB131AP59861 70 aa5.64□□□□□ -1.51
ATG4A-201ENST00000343524 NANOS2P60321 138 aaKnown RBP5.64□□□□□ -1.51
ATG4A-201ENST00000343524 IL17DQ8TAD2 202 aa5.64□□□□□ -1.51
ATG4A-201ENST00000343524 C6orf99Q4VX62 202 aa5.63□□□□□ -1.51
ATG4A-201ENST00000343524 Q6ZTC4 211 aa5.63□□□□□ -1.51
ATG4A-201ENST00000343524 MRPL55Q7Z7F7 128 aaKnown RBP5.63□□□□□ -1.51
ATG4A-201ENST00000343524 hDV103S1A0JD37 113 aa5.62□□□□□ -1.51
ATG4A-201ENST00000343524 H3BUX3 64 aa5.62□□□□□ -1.51
ATG4A-201ENST00000343524 DEFB114Q30KQ6 69 aa5.62□□□□□ -1.51
ATG4A-201ENST00000343524 KRTAP4-2Q9BYR5 136 aa5.62□□□□□ -1.51
ATG4A-201ENST00000343524 ZANQ9Y493 2812 aa5.62□□□□□ -1.51
ATG4A-201ENST00000343524 TRGV1A0A0A0MS02 117 aa5.62□□□□□ -1.51
ATG4A-201ENST00000343524 IGHV4-31P0DP07 118 aa5.62□□□□□ -1.51
ATG4A-201ENST00000343524 LY6EQ16553 131 aa5.62□□□□□ -1.51
ATG4A-201ENST00000343524 KHDC1LQ5JSQ8 128 aa5.62□□□□□ -1.51
ATG4A-201ENST00000343524 OCR1Q9BZK8 76 aa5.62□□□□□ -1.51
ATG4A-201ENST00000343524 UBE2BP63146 152 aa5.6□□□□□ -1.51
ATG4A-201ENST00000343524 KRTAP1-1Q07627 177 aa5.6□□□□□ -1.51
ATG4A-201ENST00000343524 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP5.6□□□□□ -1.51
ATG4A-201ENST00000343524 HRNRQ86YZ3 2850 aaPredicted RBP5.6□□□□□ -1.51
ATG4A-201ENST00000343524 COX7BP24311 80 aa5.6□□□□□ -1.51
ATG4A-201ENST00000343524 CCL24O00175 119 aa5.59□□□□□ -1.51
ATG4A-201ENST00000343524 ROS1P08922 2347 aa5.59□□□□□ -1.52
ATG4A-201ENST00000343524 IGKV3OR2-268A0A0C4DH90 116 aa5.58□□□□□ -1.52
ATG4A-201ENST00000343524 STHQ8IWL8 128 aa5.58□□□□□ -1.52
ATG4A-201ENST00000343524 MGAM2Q2M2H8 2515 aa5.58□□□□□ -1.52
ATG4A-201ENST00000343524 TRBV6-8A0A0A6YYG3 113 aa5.58□□□□□ -1.52
ATG4A-201ENST00000343524 LINC00959A0A1B0GUT2 108 aa5.58□□□□□ -1.52
ATG4A-201ENST00000343524 IGKV4-1P06312 121 aa5.58□□□□□ -1.52
ATG4A-201ENST00000343524 BRD3OSQ6XYD6 125 aa5.58□□□□□ -1.52
ATG4A-201ENST00000343524 Q6ZQY7 126 aa5.58□□□□□ -1.52
ATG4A-201ENST00000343524 MAP6D1Q9H9H5 199 aa5.58□□□□□ -1.52
ATG4A-201ENST00000343524 RETNQ9HD89 108 aa5.58□□□□□ -1.52
ATG4A-201ENST00000343524 IGHV4-28A0A0C4DH34 117 aa5.57□□□□□ -1.52
ATG4A-201ENST00000343524 M0R2N4 97 aa5.57□□□□□ -1.52
ATG4A-201ENST00000343524 IGHV4-59P01825 116 aa5.57□□□□□ -1.52
ATG4A-201ENST00000343524 UBE2E2Q96LR5 201 aa5.57□□□□□ -1.52
ATG4A-201ENST00000343524 LCE6AA0A183 80 aa5.56□□□□□ -1.52
ATG4A-201ENST00000343524 A0A1B0GW54 56 aa5.56□□□□□ -1.52
ATG4A-201ENST00000343524 CD164L2Q6UWJ8 174 aa5.56□□□□□ -1.52
ATG4A-201ENST00000343524 Q6ZRP5 223 aa5.56□□□□□ -1.52
ATG4A-201ENST00000343524 CYP4F30PQ9H0H9 118 aa5.56□□□□□ -1.52
ATG4A-201ENST00000343524 IGLV4-60A0A075B6I1 120 aa5.56□□□□□ -1.52
ATG4A-201ENST00000343524 IGHV4-30-2A0A087WSY4 118 aa5.56□□□□□ -1.52
ATG4A-201ENST00000343524 UBE2AP49459 152 aa5.56□□□□□ -1.52
ATG4A-201ENST00000343524 SCXQ7RTU7 201 aa5.56□□□□□ -1.52
ATG4A-201ENST00000343524 KTN1-AS1Q86SY8 53 aa5.56□□□□□ -1.52
ATG4A-201ENST00000343524 DIRC1Q969H9 104 aa5.56□□□□□ -1.52
ATG4A-201ENST00000343524 HIGD2AQ9BW72 106 aa5.56□□□□□ -1.52
ATG4A-201ENST00000343524 RYR3Q15413 4870 aa5.55□□□□□ -1.52
ATG4A-201ENST00000343524 NDUFB1O75438 58 aa5.55□□□□□ -1.52
Retrieved 100 of 20,778 RNA–protein pairs in 52.6 ms