RNA–Protein interactions for RNA: ENST00000341472.9

SYNE2-201, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 1 (best) BASIC

Gene SYNE2, Length 1,132 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-201ENST00000341472 H0Y9J4 135 aa12.23□□□□□ -0.45
SYNE2-201ENST00000341472 H3BRM9 83 aa12.23□□□□□ -0.45
SYNE2-201ENST00000341472 SPINK8P0C7L1 97 aa12.23□□□□□ -0.45
SYNE2-201ENST00000341472 IGKCP01834 107 aa12.22□□□□□ -0.45
SYNE2-201ENST00000341472 KRTAP3-3Q9BYR6 98 aa12.22□□□□□ -0.45
SYNE2-201ENST00000341472 KRTAP3-2Q9BYR7 98 aa12.22□□□□□ -0.45
SYNE2-201ENST00000341472 C11orf86A6NJI1 115 aa12.21□□□□□ -0.45
SYNE2-201ENST00000341472 PMCHL2Q9BQD1 86 aa12.2□□□□□ -0.46
SYNE2-201ENST00000341472 SCGB1D1O95968 90 aa12.19□□□□□ -0.46
SYNE2-201ENST00000341472 ZNF22P17026 224 aaPredicted RBP12.19□□□□□ -0.46
SYNE2-201ENST00000341472 TMEM170BQ5T4T1 132 aa12.19□□□□□ -0.46
SYNE2-201ENST00000341472 PRR26Q8N8Z3 221 aa12.19□□□□□ -0.46
SYNE2-201ENST00000341472 TP73-AS1Q9UF72 201 aa12.18□□□□□ -0.46
SYNE2-201ENST00000341472 JOSD1Q15040 202 aaPredicted RBP12.17□□□□□ -0.46
SYNE2-201ENST00000341472 MRPL55Q7Z7F7 128 aaKnown RBP12.17□□□□□ -0.46
SYNE2-201ENST00000341472 LRP2P98164 4655 aa12.16□□□□□ -0.46
SYNE2-201ENST00000341472 ZNF861PO60384 105 aa12.16□□□□□ -0.46
SYNE2-201ENST00000341472 HERVK_113P61574 105 aa12.15□□□□□ -0.46
SYNE2-201ENST00000341472 IGLV1-50A0A075B6I6 118 aa12.14□□□□□ -0.47
SYNE2-201ENST00000341472 IGLV5-39A0A0G2JS06 123 aa12.14□□□□□ -0.47
SYNE2-201ENST00000341472 TMEM223A0PJW6 202 aa12.13□□□□□ -0.47
SYNE2-201ENST00000341472 LINC00167Q96N53 147 aa12.13□□□□□ -0.47
SYNE2-201ENST00000341472 LOC105371267A0A1B0GV96 52 aa12.12□□□□□ -0.47
SYNE2-201ENST00000341472 KRTAP1-4P0C5Y4 121 aa12.12□□□□□ -0.47
SYNE2-201ENST00000341472 GAGE10A6NGK3 116 aa12.1□□□□□ -0.47
SYNE2-201ENST00000341472 RPL37AP8A6NKH3 93 aa12.1□□□□□ -0.47
SYNE2-201ENST00000341472 HSBP1L1C9JCN9 74 aa12.1□□□□□ -0.47
SYNE2-201ENST00000341472 BCE1O60756 84 aa12.1□□□□□ -0.47
SYNE2-201ENST00000341472 PFN2P35080 140 aa12.1□□□□□ -0.47
SYNE2-201ENST00000341472 ATOH7Q8N100 152 aa12.1□□□□□ -0.47
SYNE2-201ENST00000341472 IGLV5-37A0A075B6J1 123 aa12.09□□□□□ -0.47
SYNE2-201ENST00000341472 PYY3Q5JQD4 70 aa12.09□□□□□ -0.47
SYNE2-201ENST00000341472 RPL28P46779 137 aaKnown RBP12.08□□□□□ -0.48
SYNE2-201ENST00000341472 NKAPP1Q8N9T2 125 aa12.08□□□□□ -0.48
SYNE2-201ENST00000341472 PLEKHB2Q96CS7 222 aa12.08□□□□□ -0.48
SYNE2-201ENST00000341472 E9PLD3 99 aa12.07□□□□□ -0.48
SYNE2-201ENST00000341472 LEPROTO15243 131 aa12.06□□□□□ -0.48
SYNE2-201ENST00000341472 RPL13AP40429 203 aaKnown RBP12.06□□□□□ -0.48
SYNE2-201ENST00000341472 ERG28Q9UKR5 140 aa12.06□□□□□ -0.48
SYNE2-201ENST00000341472 COX17Q14061 63 aa12.05□□□□□ -0.48
SYNE2-201ENST00000341472 ZNF625Q96I27 306 aaPredicted RBP12.05□□□□□ -0.48
SYNE2-201ENST00000341472 SFTA2Q6UW10 78 aa12.04□□□□□ -0.48
SYNE2-201ENST00000341472 SND1-IT1Q9HBX3 110 aa12.04□□□□□ -0.48
SYNE2-201ENST00000341472 VAMP8Q9BV40 100 aa12.03□□□□□ -0.48
SYNE2-201ENST00000341472 J3QQQ9 107 aa12.02□□□□□ -0.49
SYNE2-201ENST00000341472 SMIM6P0DI80 62 aa12.02□□□□□ -0.49
SYNE2-201ENST00000341472 LGALS3P17931 250 aaKnown RBP12.02□□□□□ -0.49
SYNE2-201ENST00000341472 RPL24P83731 157 aaKnown RBP12.02□□□□□ -0.49
SYNE2-201ENST00000341472 S100A12P80511 92 aa12.01□□□□□ -0.49
SYNE2-201ENST00000341472 NMUP48645 174 aa12□□□□□ -0.49
SYNE2-201ENST00000341472 UBE2AP49459 152 aa12□□□□□ -0.49
SYNE2-201ENST00000341472 ANKRD39Q53RE8 183 aa12□□□□□ -0.49
SYNE2-201ENST00000341472 VPREB1P12018 145 aa11.99□□□□□ -0.49
SYNE2-201ENST00000341472 IGKV2-28A0A075B6P5 120 aa11.98□□□□□ -0.49
SYNE2-201ENST00000341472 IGKV2D-28P01615 120 aa11.98□□□□□ -0.49
SYNE2-201ENST00000341472 LINC00158P58513 81 aa11.98□□□□□ -0.49
SYNE2-201ENST00000341472 NDUFA12Q9UI09 145 aa11.98□□□□□ -0.49
SYNE2-201ENST00000341472 IGKV2D-26A0A0A0MRZ7 120 aa11.97□□□□□ -0.49
SYNE2-201ENST00000341472 MYMXA0A1B0GTQ4 84 aa11.97□□□□□ -0.49
SYNE2-201ENST00000341472 HERV-K104P63124 156 aa11.97□□□□□ -0.49
SYNE2-201ENST00000341472 SPATA45Q537H7 98 aa11.97□□□□□ -0.49
SYNE2-201ENST00000341472 PAM16Q9Y3D7 125 aa11.97□□□□□ -0.49
SYNE2-201ENST00000341472 KRTAP13-1Q8IUC0 172 aa11.96□□□□□ -0.49
SYNE2-201ENST00000341472 CRYGAP11844 174 aa11.95□□□□□ -0.5
SYNE2-201ENST00000341472 TSPEAR-AS2P59090 65 aa11.95□□□□□ -0.5
SYNE2-201ENST00000341472 LINC00587B1AMM8 73 aa11.94□□□□□ -0.5
SYNE2-201ENST00000341472 RNF213Q63HN8 5207 aa11.94□□□□□ -0.5
SYNE2-201ENST00000341472 A0A0U1RRA0 63 aa11.93□□□□□ -0.5
SYNE2-201ENST00000341472 A0A087X002 238 aa11.92□□□□□ -0.5
SYNE2-201ENST00000341472 ZNF815PA8K554 130 aa11.92□□□□□ -0.5
SYNE2-201ENST00000341472 Q8NDZ9 215 aa11.92□□□□□ -0.5
SYNE2-201ENST00000341472 TMEM126AQ9H061 195 aa11.92□□□□□ -0.5
SYNE2-201ENST00000341472 TMEM238C9JI98 176 aa11.91□□□□□ -0.5
SYNE2-201ENST00000341472 COX8AP10176 69 aa11.91□□□□□ -0.5
SYNE2-201ENST00000341472 FAM19A1Q7Z5A9 133 aa11.91□□□□□ -0.5
SYNE2-201ENST00000341472 TYMSOSQ8TAI1 123 aa11.91□□□□□ -0.5
SYNE2-201ENST00000341472 ANAPC11Q9NYG5 84 aa11.91□□□□□ -0.5
SYNE2-201ENST00000341472 PCP2Q8IVA1 136 aa11.9□□□□□ -0.5
SYNE2-201ENST00000341472 M0R378 163 aa11.89□□□□□ -0.51
SYNE2-201ENST00000341472 DLEU1O43261 78 aa11.89□□□□□ -0.51
SYNE2-201ENST00000341472 TSPAN13O95857 204 aa11.89□□□□□ -0.51
SYNE2-201ENST00000341472 SMIM13P0DJ93 91 aa11.89□□□□□ -0.51
SYNE2-201ENST00000341472 PRR4Q16378 134 aa11.89□□□□□ -0.51
SYNE2-201ENST00000341472 C12orf57Q99622 126 aa11.89□□□□□ -0.51
SYNE2-201ENST00000341472 LPAP08519 4548 aa11.89□□□□□ -0.51
SYNE2-201ENST00000341472 PRLHP81277 87 aa11.88□□□□□ -0.51
SYNE2-201ENST00000341472 MEIG1Q5JSS6 88 aa11.88□□□□□ -0.51
SYNE2-201ENST00000341472 BOD1L2Q8IYS8 172 aa11.88□□□□□ -0.51
SYNE2-201ENST00000341472 TTTY13Q9BZ97 58 aa11.88□□□□□ -0.51
SYNE2-201ENST00000341472 A0A0J9YXY3 114 aa11.87□□□□□ -0.51
SYNE2-201ENST00000341472 FAM229BQ4G0N7 80 aa11.87□□□□□ -0.51
SYNE2-201ENST00000341472 SLC25A34Q6PIV7 304 aa11.87□□□□□ -0.51
SYNE2-201ENST00000341472 SCGB1D4Q6XE38 83 aa11.87□□□□□ -0.51
SYNE2-201ENST00000341472 C14orf144Q96I85 54 aa11.87□□□□□ -0.51
SYNE2-201ENST00000341472 LINC00518Q8N0U6 118 aa11.86□□□□□ -0.51
SYNE2-201ENST00000341472 TIMM17BO60830 172 aa11.85□□□□□ -0.51
SYNE2-201ENST00000341472 MIR7-3HGQ8N6C7 128 aa11.84□□□□□ -0.51
SYNE2-201ENST00000341472 KRTAP13-2Q52LG2 175 aa11.83□□□□□ -0.52
SYNE2-201ENST00000341472 UQCR10Q9UDW1 63 aa11.81□□□□□ -0.52
SYNE2-201ENST00000341472 HIGD2AQ9BW72 106 aa11.8□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 46 ms