RNA–Protein interactions for RNA: ENST00000340958.3

CLDN4-201, Transcript of claudin 4, humanhuman

APPRIS P1 BASIC

Gene CLDN4, Length 1,831 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN4-201ENST00000340958 EIF4EBP3O60516 100 aaPredicted RBP11.4□□□□□ -0.58
CLDN4-201ENST00000340958 SOSTDC1Q6X4U4 206 aa11.4□□□□□ -0.58
CLDN4-201ENST00000340958 CARD19Q96LW7 228 aa11.4□□□□□ -0.58
CLDN4-201ENST00000340958 SND1-IT1Q9HBX3 110 aa11.39□□□□□ -0.59
CLDN4-201ENST00000340958 PGPEP1Q9NXJ5 209 aa11.39□□□□□ -0.59
CLDN4-201ENST00000340958 DNAH6Q9C0G6 4158 aa11.38□□□□□ -0.59
CLDN4-201ENST00000340958 C14orf177Q52M58 125 aa11.38□□□□□ -0.59
CLDN4-201ENST00000340958 PRO1854Q9UHT4 67 aa11.37□□□□□ -0.59
CLDN4-201ENST00000340958 A0A0B4J2C4 111 aa11.37□□□□□ -0.59
CLDN4-201ENST00000340958 H7C2G1 150 aa11.36□□□□□ -0.59
CLDN4-201ENST00000340958 TSPAN13O95857 204 aa11.36□□□□□ -0.59
CLDN4-201ENST00000340958 ETDBQ3ZM63 59 aa11.36□□□□□ -0.59
CLDN4-201ENST00000340958 Q1RN00 199 aa11.35□□□□□ -0.59
CLDN4-201ENST00000340958 PPDPFQ9H3Y8 114 aa11.35□□□□□ -0.59
CLDN4-201ENST00000340958 Q6ZR54 194 aa11.35□□□□□ -0.59
CLDN4-201ENST00000340958 NDUFC2-KCTD14E9PQ53 114 aa11.34□□□□□ -0.59
CLDN4-201ENST00000340958 GAGE2EQ4V326 116 aa11.34□□□□□ -0.59
CLDN4-201ENST00000340958 GAGE2DQ9UEU5 116 aa11.34□□□□□ -0.59
CLDN4-201ENST00000340958 C1orf134Q5TEV5 83 aa11.33□□□□□ -0.6
CLDN4-201ENST00000340958 IGLV2-33A0A075B6J2 118 aaPredicted RBP11.32□□□□□ -0.6
CLDN4-201ENST00000340958 SLPIP03973 132 aa11.32□□□□□ -0.6
CLDN4-201ENST00000340958 RPL18AQ02543 176 aaKnown RBP11.32□□□□□ -0.6
CLDN4-201ENST00000340958 Q6ZRN7 208 aaPredicted RBP11.32□□□□□ -0.6
CLDN4-201ENST00000340958 SMCPP49901 116 aaPredicted RBP11.32□□□□□ -0.6
CLDN4-201ENST00000340958 MTURNQ8N3F0 131 aa11.32□□□□□ -0.6
CLDN4-201ENST00000340958 XAGE1AQ9HD64 81 aa11.32□□□□□ -0.6
CLDN4-201ENST00000340958 RPL13AP40429 203 aaKnown RBP11.3□□□□□ -0.6
CLDN4-201ENST00000340958 PSMB2P49721 201 aa11.3□□□□□ -0.6
CLDN4-201ENST00000340958 SIGMAR1Q99720 223 aa11.3□□□□□ -0.6
CLDN4-201ENST00000340958 TRAV13-2A0A0B4J235 113 aa11.3□□□□□ -0.6
CLDN4-201ENST00000340958 LOC107984156A0A0G2JMH3 177 aa11.3□□□□□ -0.6
CLDN4-201ENST00000340958 LYRM7Q5U5X0 104 aa11.3□□□□□ -0.6
CLDN4-201ENST00000340958 ARL17AQ8IVW1 177 aa11.3□□□□□ -0.6
CLDN4-201ENST00000340958 FRAS1Q86XX4 4008 aa11.29□□□□□ -0.6
CLDN4-201ENST00000340958 LRCOL1A6NCL2 159 aa11.29□□□□□ -0.6
CLDN4-201ENST00000340958 Q6ZRP5 223 aa11.29□□□□□ -0.6
CLDN4-201ENST00000340958 OR13C6PQ8NH95 151 aa11.29□□□□□ -0.6
CLDN4-201ENST00000340958 TRBV20-1A0A075B6N2 111 aa11.27□□□□□ -0.61
CLDN4-201ENST00000340958 NDUFC2O95298 119 aa11.27□□□□□ -0.61
CLDN4-201ENST00000340958 CNBPP62633 177 aaKnown RBP11.27□□□□□ -0.61
CLDN4-201ENST00000340958 GAGE2BQ13066 116 aa11.27□□□□□ -0.61
CLDN4-201ENST00000340958 IGKV2-28A0A075B6P5 120 aa11.26□□□□□ -0.61
CLDN4-201ENST00000340958 LOC107984640A0A0U1RRK4 108 aa11.26□□□□□ -0.61
CLDN4-201ENST00000340958 TCL1BO95988 128 aa11.26□□□□□ -0.61
CLDN4-201ENST00000340958 IGKV2D-28P01615 120 aa11.26□□□□□ -0.61
CLDN4-201ENST00000340958 SCGB1C2P0DMR2 95 aa11.26□□□□□ -0.61
CLDN4-201ENST00000340958 PRR3P79522 188 aaKnown RBP11.26□□□□□ -0.61
CLDN4-201ENST00000340958 DNAH10Q8IVF4 4471 aa11.26□□□□□ -0.61
CLDN4-201ENST00000340958 NCR3O14931 201 aa11.25□□□□□ -0.61
CLDN4-201ENST00000340958 TLX1NBP0CAT3 122 aa11.25□□□□□ -0.61
CLDN4-201ENST00000340958 LINC00337Q8N6G1 96 aa11.25□□□□□ -0.61
CLDN4-201ENST00000340958 Q8N814 137 aa11.25□□□□□ -0.61
CLDN4-201ENST00000340958 DNAH2Q9P225 4427 aa11.25□□□□□ -0.61
CLDN4-201ENST00000340958 A0A087WTM6 91 aa11.24□□□□□ -0.61
CLDN4-201ENST00000340958 EPPK1P58107 5090 aaKnown RBP11.23□□□□□ -0.61
CLDN4-201ENST00000340958 S100A7L2Q5SY68 101 aa11.23□□□□□ -0.61
CLDN4-201ENST00000340958 COX6CP09669 75 aa11.21□□□□□ -0.61
CLDN4-201ENST00000340958 C9orf129Q5T035 196 aaKnown RBP11.21□□□□□ -0.62
CLDN4-201ENST00000340958 TEN1Q86WV5 123 aa11.21□□□□□ -0.62
CLDN4-201ENST00000340958 Q8NDZ9 215 aa11.21□□□□□ -0.62
CLDN4-201ENST00000340958 A0A1B0GV72 72 aa11.2□□□□□ -0.62
CLDN4-201ENST00000340958 PPDPFLQ8WWR9 84 aa11.2□□□□□ -0.62
CLDN4-201ENST00000340958 TMEM126AQ9H061 195 aa11.2□□□□□ -0.62
CLDN4-201ENST00000340958 PKIGQ9Y2B9 76 aa11.2□□□□□ -0.62
CLDN4-201ENST00000340958 M0QXV9 152 aa11.19□□□□□ -0.62
CLDN4-201ENST00000340958 TRIAP1O43715 76 aa11.19□□□□□ -0.62
CLDN4-201ENST00000340958 IGKV2-24A0A0C4DH68 120 aa11.19□□□□□ -0.62
CLDN4-201ENST00000340958 NKAPP1Q8N9T2 125 aa11.19□□□□□ -0.62
CLDN4-201ENST00000340958 CDIP1Q9H305 208 aa11.19□□□□□ -0.62
CLDN4-201ENST00000340958 TRBV10-2A0A0K0K1G8 114 aa11.17□□□□□ -0.62
CLDN4-201ENST00000340958 VPREB1P12018 145 aa11.16□□□□□ -0.62
CLDN4-201ENST00000340958 C9orf163Q8N9P6 203 aa11.16□□□□□ -0.62
CLDN4-201ENST00000340958 C16orf90A8MZG2 172 aa11.16□□□□□ -0.62
CLDN4-201ENST00000340958 SMIM11BQ8TCY0 68 aa11.16□□□□□ -0.62
CLDN4-201ENST00000340958 FAT2Q9NYQ8 4349 aa11.15□□□□□ -0.62
CLDN4-201ENST00000340958 A0A096LNI7 61 aa11.15□□□□□ -0.62
CLDN4-201ENST00000340958 M0R378 163 aa11.15□□□□□ -0.62
CLDN4-201ENST00000340958 LINC01620Q4KN68 170 aa11.15□□□□□ -0.62
CLDN4-201ENST00000340958 DNAH17Q9UFH2 4485 aa11.14□□□□□ -0.63
CLDN4-201ENST00000340958 TNP2Q05952 138 aa11.14□□□□□ -0.63
CLDN4-201ENST00000340958 LINC01600Q96MT4 127 aa11.14□□□□□ -0.63
CLDN4-201ENST00000340958 RPL28P46779 137 aaKnown RBP11.14□□□□□ -0.63
CLDN4-201ENST00000340958 SERTAD4-AS1Q5TG53 156 aa11.14□□□□□ -0.63
CLDN4-201ENST00000340958 FAM19A5Q7Z5A7 132 aaPredicted RBP11.14□□□□□ -0.63
CLDN4-201ENST00000340958 ANKRD29Q8N6D5 301 aa11.14□□□□□ -0.63
CLDN4-201ENST00000340958 HECTD4Q9Y4D8 3996 aa11.13□□□□□ -0.63
CLDN4-201ENST00000340958 FAM168BA1KXE4 195 aa11.13□□□□□ -0.63
CLDN4-201ENST00000340958 RTL8CO15255 209 aa11.13□□□□□ -0.63
CLDN4-201ENST00000340958 SLC25A20O43772 301 aa11.13□□□□□ -0.63
CLDN4-201ENST00000340958 IGLV5-52A0A0A0MRZ9 124 aa11.12□□□□□ -0.63
CLDN4-201ENST00000340958 DPH3Q96FX2 82 aa11.12□□□□□ -0.63
CLDN4-201ENST00000340958 TRBV10-3A0A0K0K1G6 114 aa11.12□□□□□ -0.63
CLDN4-201ENST00000340958 FUSP35637 526 aaKnown RBP eCLIP11.12□□□□□ -0.63
CLDN4-201ENST00000340958 PLA2G2DQ9UNK4 145 aa11.12□□□□□ -0.63
CLDN4-201ENST00000340958 C9JAW5 83 aa11.11□□□□□ -0.63
CLDN4-201ENST00000340958 IGLV6-57P01721 117 aa11.11□□□□□ -0.63
CLDN4-201ENST00000340958 ATXN8Q156A1 80 aa11.1□□□□□ -0.63
CLDN4-201ENST00000340958 LINC00474Q9P2X8 69 aa11.1□□□□□ -0.63
CLDN4-201ENST00000340958 SDIM1Q6ZPB5 146 aa11.09□□□□□ -0.63
CLDN4-201ENST00000340958 CLEC2BQ92478 149 aa11.09□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms