RNA–Protein interactions for RNA: ENST00000331194.8

CCDC88C-201, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 5 BASIC

Gene CCDC88C, Length 3,104 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-201ENST00000331194 HIVEP1P15822 2718 aa9.28□□□□□ -0.92
CCDC88C-201ENST00000331194 A0A096LPF7 62 aa9.27□□□□□ -0.92
CCDC88C-201ENST00000331194 PLAC8L1A1L4L8 177 aa9.27□□□□□ -0.93
CCDC88C-201ENST00000331194 LINC01547P58512 204 aaPredicted RBP9.27□□□□□ -0.93
CCDC88C-201ENST00000331194 ATP5EP2Q5VTU8 51 aa9.27□□□□□ -0.93
CCDC88C-201ENST00000331194 DEFB113Q30KQ7 82 aa9.27□□□□□ -0.93
CCDC88C-201ENST00000331194 GIG44P09565 113 aaPredicted RBP9.26□□□□□ -0.93
CCDC88C-201ENST00000331194 LAMTOR3Q9UHA4 124 aa9.26□□□□□ -0.93
CCDC88C-201ENST00000331194 ATRQ13535 2644 aa9.26□□□□□ -0.93
CCDC88C-201ENST00000331194 LINC01356Q8N9X3 169 aa9.26□□□□□ -0.93
CCDC88C-201ENST00000331194 SMR3AQ99954 134 aa9.26□□□□□ -0.93
CCDC88C-201ENST00000331194 TRBV7-6A0A0J9YX20 115 aa9.25□□□□□ -0.93
CCDC88C-201ENST00000331194 Q6ZQT0 140 aa9.25□□□□□ -0.93
CCDC88C-201ENST00000331194 TRAV7A0A075B6U4 112 aa9.25□□□□□ -0.93
CCDC88C-201ENST00000331194 TENM1Q9UKZ4 2725 aa9.25□□□□□ -0.93
CCDC88C-201ENST00000331194 IGHV4-31P0DP07 118 aa9.25□□□□□ -0.93
CCDC88C-201ENST00000331194 IGLV10-54A0A075B6I4 117 aa9.24□□□□□ -0.93
CCDC88C-201ENST00000331194 Q6ZVQ6 151 aa9.24□□□□□ -0.93
CCDC88C-201ENST00000331194 TM2D3Q9BRN9 247 aa9.24□□□□□ -0.93
CCDC88C-201ENST00000331194 LINC00269Q8N2A0 174 aa9.23□□□□□ -0.93
CCDC88C-201ENST00000331194 Q8N3U1 123 aa9.23□□□□□ -0.93
CCDC88C-201ENST00000331194 DEFB130BP0DP73 79 aa9.22□□□□□ -0.93
CCDC88C-201ENST00000331194 DEFB130AP0DP74 79 aa9.22□□□□□ -0.93
CCDC88C-201ENST00000331194 Q6YL49 198 aa9.22□□□□□ -0.93
CCDC88C-201ENST00000331194 J3QKU1 62 aa9.22□□□□□ -0.93
CCDC88C-201ENST00000331194 TRRAPQ9Y4A5 3859 aa9.22□□□□□ -0.93
CCDC88C-201ENST00000331194 TRBV10-3A0A0K0K1G6 114 aa9.22□□□□□ -0.93
CCDC88C-201ENST00000331194 C4orf3Q8WVX3 66 aa9.21□□□□□ -0.93
CCDC88C-201ENST00000331194 LINC00575Q6W349 94 aa9.21□□□□□ -0.94
CCDC88C-201ENST00000331194 KLKP1Q107X0 134 aa9.2□□□□□ -0.94
CCDC88C-201ENST00000331194 FAM229BQ4G0N7 80 aa9.2□□□□□ -0.94
CCDC88C-201ENST00000331194 KRTAP1-3Q8IUG1 177 aa9.2□□□□□ -0.94
CCDC88C-201ENST00000331194 Q8IZM0 81 aa9.19□□□□□ -0.94
CCDC88C-201ENST00000331194 ANK3Q12955 4377 aaKnown RBP9.19□□□□□ -0.94
CCDC88C-201ENST00000331194 Q6ZQY7 126 aa9.19□□□□□ -0.94
CCDC88C-201ENST00000331194 F8P00451 2351 aa9.19□□□□□ -0.94
CCDC88C-201ENST00000331194 NSD1Q96L73 2696 aaPredicted RBP9.18□□□□□ -0.94
CCDC88C-201ENST00000331194 KIAA0087Q14695 138 aa9.18□□□□□ -0.94
CCDC88C-201ENST00000331194 C6orf223Q8N319 242 aa9.18□□□□□ -0.94
CCDC88C-201ENST00000331194 Q8N9L7 120 aa9.17□□□□□ -0.94
CCDC88C-201ENST00000331194 GYPEP15421 78 aa9.17□□□□□ -0.94
CCDC88C-201ENST00000331194 C10orf25Q5T742 122 aa9.17□□□□□ -0.94
CCDC88C-201ENST00000331194 C16orf74Q96GX8 76 aa9.17□□□□□ -0.94
CCDC88C-201ENST00000331194 ZNF561-AS1K7EIQ3 104 aa9.16□□□□□ -0.94
CCDC88C-201ENST00000331194 DSCR9P59020 149 aa9.16□□□□□ -0.94
CCDC88C-201ENST00000331194 ESM1Q9NQ30 184 aa9.15□□□□□ -0.95
CCDC88C-201ENST00000331194 LOC110117498A0A087WWA1 95 aa9.14□□□□□ -0.95
CCDC88C-201ENST00000331194 LINC01006Q8NI28 216 aa9.14□□□□□ -0.95
CCDC88C-201ENST00000331194 UNQ6190/PRO20217Q6UXQ8 127 aa9.14□□□□□ -0.95
CCDC88C-201ENST00000331194 CCL24O00175 119 aa9.12□□□□□ -0.95
CCDC88C-201ENST00000331194 CSNK1G2-AS1Q8NCQ2 148 aa9.12□□□□□ -0.95
CCDC88C-201ENST00000331194 MUC7Q8TAX7 377 aa9.12□□□□□ -0.95
CCDC88C-201ENST00000331194 CHCHD10Q8WYQ3 142 aaPredicted RBP9.12□□□□□ -0.95
CCDC88C-201ENST00000331194 TRBV7-4A0A0J9YYF1 115 aa9.12□□□□□ -0.95
CCDC88C-201ENST00000331194 MIFP14174 115 aa9.12□□□□□ -0.95
CCDC88C-201ENST00000331194 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP9.12□□□□□ -0.95
CCDC88C-201ENST00000331194 PMAIP1Q13794 54 aa9.11□□□□□ -0.95
CCDC88C-201ENST00000331194 NREPQ16612 68 aa9.1□□□□□ -0.95
CCDC88C-201ENST00000331194 RETNQ9HD89 108 aa9.1□□□□□ -0.95
CCDC88C-201ENST00000331194 ANGP03950 147 aaKnown RBP9.1□□□□□ -0.95
CCDC88C-201ENST00000331194 XAGE1AQ9HD64 81 aa9.09□□□□□ -0.95
CCDC88C-201ENST00000331194 FSHBP01225 129 aa9.09□□□□□ -0.95
CCDC88C-201ENST00000331194 MAST4O15021 2626 aa9.09□□□□□ -0.95
CCDC88C-201ENST00000331194 STAB1Q9NY15 2570 aa9.09□□□□□ -0.95
CCDC88C-201ENST00000331194 DAD1P61803 113 aa9.09□□□□□ -0.95
CCDC88C-201ENST00000331194 CXCL6P80162 114 aa9.09□□□□□ -0.95
CCDC88C-201ENST00000331194 BCE1O60756 84 aa9.08□□□□□ -0.96
CCDC88C-201ENST00000331194 COX17Q14061 63 aa9.08□□□□□ -0.96
CCDC88C-201ENST00000331194 TMEM254Q8TBM7 123 aa9.08□□□□□ -0.96
CCDC88C-201ENST00000331194 A0A1B0GUV1 79 aa9.08□□□□□ -0.96
CCDC88C-201ENST00000331194 BPY2O14599 106 aa9.08□□□□□ -0.96
CCDC88C-201ENST00000331194 CD164L2Q6UWJ8 174 aa9.08□□□□□ -0.96
CCDC88C-201ENST00000331194 LRCOL1A6NCL2 159 aa9.07□□□□□ -0.96
CCDC88C-201ENST00000331194 DEFB4AO15263 64 aa9.07□□□□□ -0.96
CCDC88C-201ENST00000331194 C19orf73Q9NVV2 129 aa9.07□□□□□ -0.96
CCDC88C-201ENST00000331194 REG3AQ06141 175 aa9.06□□□□□ -0.96
CCDC88C-201ENST00000331194 BAHCC1Q9P281 2608 aa9.06□□□□□ -0.96
CCDC88C-201ENST00000331194 DNAJC9-AS1A6NH13 148 aa9.05□□□□□ -0.96
CCDC88C-201ENST00000331194 IGLV6-57P01721 117 aa9.05□□□□□ -0.96
CCDC88C-201ENST00000331194 FBN1P35555 2871 aaKnown RBP9.05□□□□□ -0.96
CCDC88C-201ENST00000331194 IGHV4-28A0A0C4DH34 117 aa9.05□□□□□ -0.96
CCDC88C-201ENST00000331194 C9orf66Q5T8R8 295 aa9.05□□□□□ -0.96
CCDC88C-201ENST00000331194 CYSRT1A8MQ03 144 aa9.05□□□□□ -0.96
CCDC88C-201ENST00000331194 NDUFC1O43677 76 aa9.04□□□□□ -0.96
CCDC88C-201ENST00000331194 SPAG11BQ08648 103 aa9.03□□□□□ -0.96
CCDC88C-201ENST00000331194 PKD1L1Q8TDX9 2849 aa9.03□□□□□ -0.96
CCDC88C-201ENST00000331194 KRTAP1-1Q07627 177 aa9.03□□□□□ -0.96
CCDC88C-201ENST00000331194 HIGD2AQ9BW72 106 aa9.02□□□□□ -0.96
CCDC88C-201ENST00000331194 ATP5EP56381 51 aaPredicted RBP9.02□□□□□ -0.97
CCDC88C-201ENST00000331194 ESRGQ1W209 222 aa9.02□□□□□ -0.97
CCDC88C-201ENST00000331194 COL6A5A8TX70 2615 aa9.01□□□□□ -0.97
CCDC88C-201ENST00000331194 C3orf84H3BNL1 204 aa9□□□□□ -0.97
CCDC88C-201ENST00000331194 DIRC1Q969H9 104 aa9□□□□□ -0.97
CCDC88C-201ENST00000331194 NOTCH1P46531 2555 aa9□□□□□ -0.97
CCDC88C-201ENST00000331194 IGKV4-1P06312 121 aa9□□□□□ -0.97
CCDC88C-201ENST00000331194 PDE6GP18545 87 aa9□□□□□ -0.97
CCDC88C-201ENST00000331194 PRO0255Q9UI72 69 aa9□□□□□ -0.97
CCDC88C-201ENST00000331194 KLK12Q9UKR0 248 aa9□□□□□ -0.97
CCDC88C-201ENST00000331194 ZNF73O43830 326 aaPredicted RBP8.99□□□□□ -0.97
CCDC88C-201ENST00000331194 CELA1Q9UNI1 258 aa8.99□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 59.1 ms