RNA–Protein interactions for RNA: ENST00000318787.13

HDDC2-201, Transcript of HD domain containing 2, humanhuman

TSL 1 (best)

Gene HDDC2, Length 1,350 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC2-201ENST00000318787 IGKV2-28A0A075B6P5 120 aa9.72□□□□□ -0.85
HDDC2-201ENST00000318787 IGKV2D-28P01615 120 aa9.72□□□□□ -0.85
HDDC2-201ENST00000318787 LINC00158P58513 81 aa9.72□□□□□ -0.85
HDDC2-201ENST00000318787 COLCA2A8K830 154 aa9.71□□□□□ -0.86
HDDC2-201ENST00000318787 SFTA2Q6UW10 78 aa9.71□□□□□ -0.86
HDDC2-201ENST00000318787 ZNF861PO60384 105 aa9.7□□□□□ -0.86
HDDC2-201ENST00000318787 LINC00310P59036 64 aa9.7□□□□□ -0.86
HDDC2-201ENST00000318787 COX17Q14061 63 aa9.7□□□□□ -0.86
HDDC2-201ENST00000318787 MEIG1Q5JSS6 88 aa9.7□□□□□ -0.86
HDDC2-201ENST00000318787 BCE1O60756 84 aa9.69□□□□□ -0.86
HDDC2-201ENST00000318787 ATP6V1G1O75348 118 aa9.69□□□□□ -0.86
HDDC2-201ENST00000318787 IGLV5-37A0A075B6J1 123 aa9.68□□□□□ -0.86
HDDC2-201ENST00000318787 RPL28P46779 137 aaKnown RBP9.68□□□□□ -0.86
HDDC2-201ENST00000318787 UBE2AP49459 152 aa9.68□□□□□ -0.86
HDDC2-201ENST00000318787 RPL24P83731 157 aaKnown RBP9.68□□□□□ -0.86
HDDC2-201ENST00000318787 HSPB8Q9UJY1 196 aa9.68□□□□□ -0.86
HDDC2-201ENST00000318787 PMCHL2Q9BQD1 86 aa9.67□□□□□ -0.86
HDDC2-201ENST00000318787 VPREB1P12018 145 aa9.66□□□□□ -0.86
HDDC2-201ENST00000318787 KRTAP1-4P0C5Y4 121 aa9.65□□□□□ -0.86
HDDC2-201ENST00000318787 SMIM13P0DJ93 91 aa9.65□□□□□ -0.86
HDDC2-201ENST00000318787 KRTAP4-8Q9BYQ9 185 aa9.65□□□□□ -0.86
HDDC2-201ENST00000318787 NDUFA12Q9UI09 145 aa9.64□□□□□ -0.87
HDDC2-201ENST00000318787 IGLV1-50A0A075B6I6 118 aa9.63□□□□□ -0.87
HDDC2-201ENST00000318787 PLNP26678 52 aa9.63□□□□□ -0.87
HDDC2-201ENST00000318787 Q8NDZ9 215 aa9.63□□□□□ -0.87
HDDC2-201ENST00000318787 TMEM238C9JI98 176 aa9.63□□□□□ -0.87
HDDC2-201ENST00000318787 DPM2O94777 84 aa9.63□□□□□ -0.87
HDDC2-201ENST00000318787 HERV-K104P63124 156 aa9.63□□□□□ -0.87
HDDC2-201ENST00000318787 FAM19A1Q7Z5A9 133 aa9.63□□□□□ -0.87
HDDC2-201ENST00000318787 MAP1LC3CQ9BXW4 147 aa9.63□□□□□ -0.87
HDDC2-201ENST00000318787 MYMXA0A1B0GTQ4 84 aa9.62□□□□□ -0.87
HDDC2-201ENST00000318787 HERVK_113P61574 105 aa9.62□□□□□ -0.87
HDDC2-201ENST00000318787 PRLHP81277 87 aa9.62□□□□□ -0.87
HDDC2-201ENST00000318787 MIR7-3HGQ8N6C7 128 aa9.62□□□□□ -0.87
HDDC2-201ENST00000318787 IGKCP01834 107 aa9.61□□□□□ -0.87
HDDC2-201ENST00000318787 RPL13AP40429 203 aaKnown RBP9.61□□□□□ -0.87
HDDC2-201ENST00000318787 TSPEAR-AS2P59090 65 aa9.61□□□□□ -0.87
HDDC2-201ENST00000318787 BOD1L2Q8IYS8 172 aa9.61□□□□□ -0.87
HDDC2-201ENST00000318787 LRP2P98164 4655 aa9.6□□□□□ -0.87
HDDC2-201ENST00000318787 NCR3O14931 201 aa9.6□□□□□ -0.87
HDDC2-201ENST00000318787 LEPROTO15243 131 aa9.6□□□□□ -0.87
HDDC2-201ENST00000318787 PLEKHB2Q96CS7 222 aa9.6□□□□□ -0.87
HDDC2-201ENST00000318787 TMEM126AQ9H061 195 aa9.6□□□□□ -0.87
HDDC2-201ENST00000318787 HIST1H2BKO60814 126 aa9.59□□□□□ -0.87
HDDC2-201ENST00000318787 HIST1H2BJP06899 126 aa9.59□□□□□ -0.87
HDDC2-201ENST00000318787 LGALS3P17931 250 aaKnown RBP9.59□□□□□ -0.87
HDDC2-201ENST00000318787 HIST1H2BOP23527 126 aa9.59□□□□□ -0.87
HDDC2-201ENST00000318787 HIST1H2BBP33778 126 aa9.59□□□□□ -0.87
HDDC2-201ENST00000318787 HIST1H2BDP58876 126 aa9.59□□□□□ -0.87
HDDC2-201ENST00000318787 HIST1H2BCP62807 126 aa9.59□□□□□ -0.87
HDDC2-201ENST00000318787 HIST2H2BEQ16778 126 aa9.59□□□□□ -0.87
HDDC2-201ENST00000318787 HIST2H2BFQ5QNW6 126 aaPredicted RBP9.59□□□□□ -0.87
HDDC2-201ENST00000318787 HIST1H2BHQ93079 126 aa9.59□□□□□ -0.87
HDDC2-201ENST00000318787 HIST1H2BNQ99877 126 aa9.59□□□□□ -0.87
HDDC2-201ENST00000318787 HIST1H2BMQ99879 126 aa9.59□□□□□ -0.87
HDDC2-201ENST00000318787 LINC00587B1AMM8 73 aa9.58□□□□□ -0.88
HDDC2-201ENST00000318787 J3QQQ9 107 aa9.58□□□□□ -0.88
HDDC2-201ENST00000318787 DAND5Q8N907 189 aa9.58□□□□□ -0.88
HDDC2-201ENST00000318787 ANAPC11Q9NYG5 84 aa9.58□□□□□ -0.88
HDDC2-201ENST00000318787 EIF4EBP3O60516 100 aaPredicted RBP9.57□□□□□ -0.88
HDDC2-201ENST00000318787 M0R378 163 aa9.56□□□□□ -0.88
HDDC2-201ENST00000318787 A0A087X002 238 aa9.55□□□□□ -0.88
HDDC2-201ENST00000318787 CRYGAP11844 174 aa9.55□□□□□ -0.88
HDDC2-201ENST00000318787 KRTAP13-1Q8IUC0 172 aa9.55□□□□□ -0.88
HDDC2-201ENST00000318787 HIGD2AQ9BW72 106 aa9.55□□□□□ -0.88
HDDC2-201ENST00000318787 TYMSOSQ8TAI1 123 aa9.54□□□□□ -0.88
HDDC2-201ENST00000318787 SYS1-DBNDD2H3BUS1 97 aa9.53□□□□□ -0.88
HDDC2-201ENST00000318787 MIEN1Q9BRT3 115 aa9.53□□□□□ -0.88
HDDC2-201ENST00000318787 TSPAN13O95857 204 aa9.52□□□□□ -0.88
HDDC2-201ENST00000318787 NMUP48645 174 aa9.51□□□□□ -0.89
HDDC2-201ENST00000318787 NPC2P61916 151 aa9.51□□□□□ -0.89
HDDC2-201ENST00000318787 TRBV10-3A0A0K0K1G6 114 aa9.5□□□□□ -0.89
HDDC2-201ENST00000318787 PRYO14603 147 aa9.5□□□□□ -0.89
HDDC2-201ENST00000318787 IGKV2D-26A0A0A0MRZ7 120 aa9.49□□□□□ -0.89
HDDC2-201ENST00000318787 E9PLD3 99 aa9.49□□□□□ -0.89
HDDC2-201ENST00000318787 S100A12P80511 92 aa9.49□□□□□ -0.89
HDDC2-201ENST00000318787 PRR4Q16378 134 aa9.49□□□□□ -0.89
HDDC2-201ENST00000318787 ETDCA0A1B0GVM5 59 aa9.48□□□□□ -0.89
HDDC2-201ENST00000318787 KRTDAPP60985 99 aa9.48□□□□□ -0.89
HDDC2-201ENST00000318787 KRTAP9-2Q9BYQ4 174 aa9.48□□□□□ -0.89
HDDC2-201ENST00000318787 RNF213Q63HN8 5207 aa9.47□□□□□ -0.89
HDDC2-201ENST00000318787 A0A0J9YXY3 114 aa9.46□□□□□ -0.9
HDDC2-201ENST00000318787 KRTAP9-1A8MXZ3 250 aaPredicted RBP9.46□□□□□ -0.9
HDDC2-201ENST00000318787 C3orf79P0CE67 100 aa9.46□□□□□ -0.9
HDDC2-201ENST00000318787 DDTP30046 118 aa9.46□□□□□ -0.9
HDDC2-201ENST00000318787 KRTAP13-2Q52LG2 175 aa9.46□□□□□ -0.9
HDDC2-201ENST00000318787 LINC01545Q5VT33 79 aa9.46□□□□□ -0.9
HDDC2-201ENST00000318787 PET117Q6UWS5 81 aa9.46□□□□□ -0.9
HDDC2-201ENST00000318787 FAM229BQ4G0N7 80 aa9.45□□□□□ -0.9
HDDC2-201ENST00000318787 S100A7L2Q5SY68 101 aa9.45□□□□□ -0.9
HDDC2-201ENST00000318787 KCNQ1DNQ9H478 68 aa9.44□□□□□ -0.9
HDDC2-201ENST00000318787 ADAMTSL4-AS1Q5T5F5 129 aa9.43□□□□□ -0.9
HDDC2-201ENST00000318787 LINC00337Q8N6G1 96 aa9.43□□□□□ -0.9
HDDC2-201ENST00000318787 SPANXB1Q9NS25 103 aaPredicted RBP9.43□□□□□ -0.9
HDDC2-201ENST00000318787 ZNF815PA8K554 130 aa9.42□□□□□ -0.9
HDDC2-201ENST00000318787 LPAP08519 4548 aa9.42□□□□□ -0.9
HDDC2-201ENST00000318787 LOC107984156A0A0G2JMH3 177 aa9.41□□□□□ -0.9
HDDC2-201ENST00000318787 SOSTDC1Q6X4U4 206 aa9.41□□□□□ -0.9
HDDC2-201ENST00000318787 ARL17AQ8IVW1 177 aa9.41□□□□□ -0.9
HDDC2-201ENST00000318787 C3orf22Q8N5N4 141 aa9.41□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 90.3 ms