RNA–Protein interactions for RNA: ENST00000317840.9

COL3A1-202, Transcript of collagen type III alpha 1 chain, humanhuman

TSL 2 BASIC

Gene COL3A1, Length 3,873 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1-202ENST00000317840 XAGE1AQ9HD64 81 aa7.26□□□□□ -1.25
COL3A1-202ENST00000317840 SVIPQ8NHG7 77 aa7.26□□□□□ -1.25
COL3A1-202ENST00000317840 RBM3P98179 157 aaKnown RBP7.25□□□□□ -1.25
COL3A1-202ENST00000317840 C6orf223Q8N319 242 aa7.25□□□□□ -1.25
COL3A1-202ENST00000317840 CCKP06307 115 aa7.25□□□□□ -1.25
COL3A1-202ENST00000317840 DSCR8Q96T75 97 aa7.25□□□□□ -1.25
COL3A1-202ENST00000317840 GHRHP01286 108 aa7.24□□□□□ -1.25
COL3A1-202ENST00000317840 LOC107984640A0A0U1RRK4 108 aa7.24□□□□□ -1.25
COL3A1-202ENST00000317840 SERP2Q8N6R1 65 aa7.24□□□□□ -1.25
COL3A1-202ENST00000317840 SMIM9A6NGZ8 99 aa7.23□□□□□ -1.25
COL3A1-202ENST00000317840 PPDPFQ9H3Y8 114 aa7.23□□□□□ -1.25
COL3A1-202ENST00000317840 LYRM9A8MSI8 78 aa7.23□□□□□ -1.25
COL3A1-202ENST00000317840 ZNF561-AS1K7EIQ3 104 aa7.23□□□□□ -1.25
COL3A1-202ENST00000317840 X6R8D5 127 aa7.23□□□□□ -1.25
COL3A1-202ENST00000317840 CYSRT1A8MQ03 144 aa7.22□□□□□ -1.25
COL3A1-202ENST00000317840 J3KT08 172 aa7.22□□□□□ -1.25
COL3A1-202ENST00000317840 Q6ZQY7 126 aa7.22□□□□□ -1.25
COL3A1-202ENST00000317840 FAM19A1Q7Z5A9 133 aa7.22□□□□□ -1.25
COL3A1-202ENST00000317840 OTOGQ6ZRI0 2925 aa7.22□□□□□ -1.25
COL3A1-202ENST00000317840 KRTAP24-1Q3LI83 254 aa7.22□□□□□ -1.25
COL3A1-202ENST00000317840 COX17Q14061 63 aa7.22□□□□□ -1.25
COL3A1-202ENST00000317840 C10orf25Q5T742 122 aa7.21□□□□□ -1.25
COL3A1-202ENST00000317840 UPK3BQ9BT76 320 aa7.21□□□□□ -1.25
COL3A1-202ENST00000317840 HIGD2BQ4VC39 106 aa7.21□□□□□ -1.26
COL3A1-202ENST00000317840 C20orf197Q8N268 126 aa7.2□□□□□ -1.26
COL3A1-202ENST00000317840 CELA1Q9UNI1 258 aa7.2□□□□□ -1.26
COL3A1-202ENST00000317840 NDUFC2O95298 119 aa7.2□□□□□ -1.26
COL3A1-202ENST00000317840 CAMK2N2Q96S95 79 aa7.19□□□□□ -1.26
COL3A1-202ENST00000317840 LINC01561Q8N1V8 128 aa7.19□□□□□ -1.26
COL3A1-202ENST00000317840 IGKV2D-24A0A075B6R9 120 aa7.19□□□□□ -1.26
COL3A1-202ENST00000317840 KIAA0087Q14695 138 aa7.18□□□□□ -1.26
COL3A1-202ENST00000317840 DIRC1Q969H9 104 aa7.18□□□□□ -1.26
COL3A1-202ENST00000317840 NANOS2P60321 138 aaKnown RBP7.18□□□□□ -1.26
COL3A1-202ENST00000317840 SCXQ7RTU7 201 aa7.18□□□□□ -1.26
COL3A1-202ENST00000317840 CRYGAP11844 174 aa7.18□□□□□ -1.26
COL3A1-202ENST00000317840 LINC00575Q6W349 94 aa7.18□□□□□ -1.26
COL3A1-202ENST00000317840 TRBV10-3A0A0K0K1G6 114 aa7.17□□□□□ -1.26
COL3A1-202ENST00000317840 C11orf45Q8TAV5 145 aa7.17□□□□□ -1.26
COL3A1-202ENST00000317840 MIFP14174 115 aa7.17□□□□□ -1.26
COL3A1-202ENST00000317840 ATP5EP2Q5VTU8 51 aa7.17□□□□□ -1.26
COL3A1-202ENST00000317840 DPH3Q96FX2 82 aa7.17□□□□□ -1.26
COL3A1-202ENST00000317840 A0A0J9YWU9 116 aa7.16□□□□□ -1.26
COL3A1-202ENST00000317840 PDZD2O15018 2839 aa7.16□□□□□ -1.26
COL3A1-202ENST00000317840 TENM1Q9UKZ4 2725 aa7.16□□□□□ -1.26
COL3A1-202ENST00000317840 LELP1Q5T871 98 aa7.16□□□□□ -1.26
COL3A1-202ENST00000317840 UBE2DNLQ8IWF7 75 aa7.16□□□□□ -1.26
COL3A1-202ENST00000317840 OBSCN-AS1Q96MR7 158 aa7.16□□□□□ -1.26
COL3A1-202ENST00000317840 DEFB131BA0A096LNP1 70 aa7.15□□□□□ -1.26
COL3A1-202ENST00000317840 Q6ZTC4 211 aa7.15□□□□□ -1.26
COL3A1-202ENST00000317840 C2orf48Q96LS8 159 aa7.15□□□□□ -1.26
COL3A1-202ENST00000317840 KMT2BQ9UMN6 2715 aaPredicted RBP7.15□□□□□ -1.27
COL3A1-202ENST00000317840 COX7BP24311 80 aa7.14□□□□□ -1.27
COL3A1-202ENST00000317840 TMEM258P61165 79 aa7.14□□□□□ -1.27
COL3A1-202ENST00000317840 KPRPQ5T749 579 aaPredicted RBP7.14□□□□□ -1.27
COL3A1-202ENST00000317840 LINC00612Q8N6U2 182 aa7.14□□□□□ -1.27
COL3A1-202ENST00000317840 FAM19A5Q7Z5A7 132 aaPredicted RBP7.14□□□□□ -1.27
COL3A1-202ENST00000317840 DEFB105AQ8NG35 78 aa7.14□□□□□ -1.27
COL3A1-202ENST00000317840 VWFP04275 2813 aa7.14□□□□□ -1.27
COL3A1-202ENST00000317840 ZNF73O43830 326 aaPredicted RBP7.13□□□□□ -1.27
COL3A1-202ENST00000317840 Q8NDZ9 215 aa7.13□□□□□ -1.27
COL3A1-202ENST00000317840 CYSTM1Q9H1C7 97 aa7.13□□□□□ -1.27
COL3A1-202ENST00000317840 ZNF469Q96JG9 3925 aaPredicted RBP7.12□□□□□ -1.27
COL3A1-202ENST00000317840 C1orf43Q9BWL3 253 aa7.11□□□□□ -1.27
COL3A1-202ENST00000317840 Q6ZVQ6 151 aa7.11□□□□□ -1.27
COL3A1-202ENST00000317840 SNURFQ9Y675 71 aa7.11□□□□□ -1.27
COL3A1-202ENST00000317840 PSCAO43653 123 aa7.1□□□□□ -1.27
COL3A1-202ENST00000317840 LINC01547P58512 204 aaPredicted RBP7.1□□□□□ -1.27
COL3A1-202ENST00000317840 Q6ZQT0 140 aa7.1□□□□□ -1.27
COL3A1-202ENST00000317840 C6orf48Q9UBA6 75 aa7.1□□□□□ -1.27
COL3A1-202ENST00000317840 PDE6GP18545 87 aa7.1□□□□□ -1.27
COL3A1-202ENST00000317840 WFDC10BQ8IUB3 73 aa7.1□□□□□ -1.27
COL3A1-202ENST00000317840 M0R2N4 97 aa7.1□□□□□ -1.27
COL3A1-202ENST00000317840 NKAPP1Q8N9T2 125 aa7.1□□□□□ -1.27
COL3A1-202ENST00000317840 LYPD5Q6UWN5 251 aa7.09□□□□□ -1.27
COL3A1-202ENST00000317840 Q8NAQ8 132 aa7.09□□□□□ -1.27
COL3A1-202ENST00000317840 LINC00167Q96N53 147 aa7.09□□□□□ -1.27
COL3A1-202ENST00000317840 MUC7Q8TAX7 377 aa7.08□□□□□ -1.28
COL3A1-202ENST00000317840 KRTAP10-11P60412 298 aa7.08□□□□□ -1.28
COL3A1-202ENST00000317840 IGLV6-57P01721 117 aa7.07□□□□□ -1.28
COL3A1-202ENST00000317840 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP7.07□□□□□ -1.28
COL3A1-202ENST00000317840 NREPQ16612 68 aa7.06□□□□□ -1.28
COL3A1-202ENST00000317840 FAM236DA0A1B0GTK5 79 aa7.06□□□□□ -1.28
COL3A1-202ENST00000317840 C3orf84H3BNL1 204 aa7.06□□□□□ -1.28
COL3A1-202ENST00000317840 FAM236CP0DP71 79 aa7.06□□□□□ -1.28
COL3A1-202ENST00000317840 Q6ZRU5 148 aa7.06□□□□□ -1.28
COL3A1-202ENST00000317840 H3BQ85 93 aa7.05□□□□□ -1.28
COL3A1-202ENST00000317840 FBN1P35555 2871 aaKnown RBP7.05□□□□□ -1.28
COL3A1-202ENST00000317840 M0R378 163 aa7.05□□□□□ -1.28
COL3A1-202ENST00000317840 TRAV10A0A0B4J240 114 aa7.04□□□□□ -1.28
COL3A1-202ENST00000317840 Q8N9L7 120 aa7.04□□□□□ -1.28
COL3A1-202ENST00000317840 TRAV7A0A075B6U4 112 aa7.04□□□□□ -1.28
COL3A1-202ENST00000317840 LOC110117498A0A087WWA1 95 aa7.04□□□□□ -1.28
COL3A1-202ENST00000317840 EGFEM1PQ0D2K5 195 aa7.03□□□□□ -1.28
COL3A1-202ENST00000317840 PRR34Q9NV39 138 aa7.03□□□□□ -1.28
COL3A1-202ENST00000317840 RPS28P62857 69 aaKnown RBP7.03□□□□□ -1.28
COL3A1-202ENST00000317840 RMI2Q96E14 147 aa7.03□□□□□ -1.28
COL3A1-202ENST00000317840 NDUFC2-KCTD14E9PQ53 114 aa7.02□□□□□ -1.29
COL3A1-202ENST00000317840 SYCNQ0VAF6 134 aa7.02□□□□□ -1.29
COL3A1-202ENST00000317840 HRCT1Q6UXD1 115 aa7.02□□□□□ -1.29
COL3A1-202ENST00000317840 C5orf47Q569G3 176 aa7.01□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 38.2 ms