RNA–Protein interactions for RNA: ENST00000308987.5

CKS1B-201, Transcript of CDC28 protein kinase regulatory subunit 1B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CKS1B, Length 759 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CKS1B-201ENST00000308987 GAGE12JA6NER3 117 aa3.4□□□□□ -1.87
CKS1B-201ENST00000308987 H7C2G1 150 aa3.4□□□□□ -1.87
CKS1B-201ENST00000308987 GAGE7O76087 117 aa3.4□□□□□ -1.87
CKS1B-201ENST00000308987 GAGE12FP0CL80 117 aa3.4□□□□□ -1.87
CKS1B-201ENST00000308987 GAGE12GP0CL81 117 aa3.4□□□□□ -1.87
CKS1B-201ENST00000308987 GAGE12IP0CL82 117 aa3.4□□□□□ -1.87
CKS1B-201ENST00000308987 GAGE4Q13068 117 aa3.4□□□□□ -1.87
CKS1B-201ENST00000308987 DEFB114Q30KQ6 69 aa3.4□□□□□ -1.87
CKS1B-201ENST00000308987 LINC00242Q5T6M2 205 aa3.4□□□□□ -1.87
CKS1B-201ENST00000308987 C15orf53Q8NAA6 179 aa3.4□□□□□ -1.87
CKS1B-201ENST00000308987 ZNF625Q96I27 306 aaPredicted RBP3.4□□□□□ -1.87
CKS1B-201ENST00000308987 NACAE9PAV3 2078 aa3.4□□□□□ -1.87
CKS1B-201ENST00000308987 IGHV3OR16-12A0A075B7B8 117 aa3.39□□□□□ -1.87
CKS1B-201ENST00000308987 TRAV13-2A0A0B4J235 113 aa3.39□□□□□ -1.87
CKS1B-201ENST00000308987 SMIM1B2RUZ4 78 aa3.39□□□□□ -1.87
CKS1B-201ENST00000308987 ATP5G1P05496 136 aa3.39□□□□□ -1.87
CKS1B-201ENST00000308987 CEMP1Q6PRD7 247 aaPredicted RBP3.39□□□□□ -1.87
CKS1B-201ENST00000308987 SDIM1Q6ZPB5 146 aa3.39□□□□□ -1.87
CKS1B-201ENST00000308987 DAND5Q8N907 189 aa3.39□□□□□ -1.87
CKS1B-201ENST00000308987 DYNLRB2Q8TF09 96 aa3.39□□□□□ -1.87
CKS1B-201ENST00000308987 DEFB104AQ8WTQ1 72 aa3.39□□□□□ -1.87
CKS1B-201ENST00000308987 MYCBP2O75592 4640 aa3.38□□□□□ -1.87
CKS1B-201ENST00000308987 IGHV3-73A0A0B4J1V6 119 aa3.38□□□□□ -1.87
CKS1B-201ENST00000308987 A0A0J9YWU9 116 aa3.38□□□□□ -1.87
CKS1B-201ENST00000308987 F5H768 121 aa3.38□□□□□ -1.87
CKS1B-201ENST00000308987 K7EQD1 137 aa3.38□□□□□ -1.87
CKS1B-201ENST00000308987 INAFM2P0DMQ5 153 aa3.38□□□□□ -1.87
CKS1B-201ENST00000308987 HTN1P15515 57 aa3.38□□□□□ -1.87
CKS1B-201ENST00000308987 CXCL5P42830 114 aa3.38□□□□□ -1.87
CKS1B-201ENST00000308987 RPL28P46779 137 aaKnown RBP3.38□□□□□ -1.87
CKS1B-201ENST00000308987 LINC00643Q86TS7 51 aa3.38□□□□□ -1.87
CKS1B-201ENST00000308987 CLEC2BQ92478 149 aa3.38□□□□□ -1.87
CKS1B-201ENST00000308987 Q9H8V8 135 aa3.38□□□□□ -1.87
CKS1B-201ENST00000308987 CDC42SE2Q9NRR3 84 aa3.38□□□□□ -1.87
CKS1B-201ENST00000308987 VPS13BQ7Z7G8 4022 aa3.37□□□□□ -1.87
CKS1B-201ENST00000308987 A0A1B0GVY2 172 aa3.37□□□□□ -1.87
CKS1B-201ENST00000308987 TRBV6-4A0A1B0GX49 114 aa3.37□□□□□ -1.87
CKS1B-201ENST00000308987 H0YGX0 51 aa3.37□□□□□ -1.87
CKS1B-201ENST00000308987 COX6A2Q02221 97 aa3.37□□□□□ -1.87
CKS1B-201ENST00000308987 ODF3L2Q3SX64 289 aa3.37□□□□□ -1.87
CKS1B-201ENST00000308987 RNASE13Q5GAN3 156 aaKnown RBP3.37□□□□□ -1.87
CKS1B-201ENST00000308987 STHQ8IWL8 128 aa3.37□□□□□ -1.87
CKS1B-201ENST00000308987 C1orf158Q8N1D5 194 aa3.37□□□□□ -1.87
CKS1B-201ENST00000308987 LINC01561Q8N1V8 128 aa3.37□□□□□ -1.87
CKS1B-201ENST00000308987 TMEM243Q9BU79 118 aa3.37□□□□□ -1.87
CKS1B-201ENST00000308987 TRGV1A0A0A0MS02 117 aa3.36□□□□□ -1.87
CKS1B-201ENST00000308987 IGHV3-38A0A0C4DH36 116 aa3.36□□□□□ -1.87
CKS1B-201ENST00000308987 UBE2L6O14933 153 aa3.36□□□□□ -1.87
CKS1B-201ENST00000308987 BAALC-AS2P0C853 105 aa3.36□□□□□ -1.87
CKS1B-201ENST00000308987 DEFB135Q30KP9 77 aa3.36□□□□□ -1.87
CKS1B-201ENST00000308987 MEIG1Q5JSS6 88 aa3.36□□□□□ -1.87
CKS1B-201ENST00000308987 SOSTDC1Q6X4U4 206 aa3.36□□□□□ -1.87
CKS1B-201ENST00000308987 NTM-AS1Q6ZSK4 140 aa3.36□□□□□ -1.87
CKS1B-201ENST00000308987 C16orf74Q96GX8 76 aa3.36□□□□□ -1.87
CKS1B-201ENST00000308987 TMEM126AQ9H061 195 aa3.36□□□□□ -1.87
CKS1B-201ENST00000308987 Q9UF83 564 aa3.36□□□□□ -1.87
CKS1B-201ENST00000308987 DNAH8Q96JB1 4490 aa3.36□□□□□ -1.87
CKS1B-201ENST00000308987 A0A1B0GX51 115 aa3.35□□□□□ -1.87
CKS1B-201ENST00000308987 NUPR2A6NF83 97 aa3.35□□□□□ -1.87
CKS1B-201ENST00000308987 IBA57-AS1B1ANH7 110 aa3.35□□□□□ -1.87
CKS1B-201ENST00000308987 CRPP02741 224 aa3.35□□□□□ -1.87
CKS1B-201ENST00000308987 LINC00694P0DN24 101 aa3.35□□□□□ -1.87
CKS1B-201ENST00000308987 KRTAP10-12P60413 245 aa3.35□□□□□ -1.87
CKS1B-201ENST00000308987 NPC2P61916 151 aa3.35□□□□□ -1.87
CKS1B-201ENST00000308987 COX7B2Q8TF08 81 aa3.35□□□□□ -1.87
CKS1B-201ENST00000308987 KRTAP4-3Q9BYR4 195 aa3.35□□□□□ -1.87
CKS1B-201ENST00000308987 XCL2Q9UBD3 114 aa3.35□□□□□ -1.87
CKS1B-201ENST00000308987 A0A087WZ39 114 aa3.34□□□□□ -1.87
CKS1B-201ENST00000308987 TRAV13-1A0A0B4J241 112 aa3.34□□□□□ -1.87
CKS1B-201ENST00000308987 Q6ZTI0 123 aa3.34□□□□□ -1.87
CKS1B-201ENST00000308987 C5orf38Q86SI9 138 aa3.34□□□□□ -1.87
CKS1B-201ENST00000308987 OBSCN-AS1Q96MR7 158 aa3.34□□□□□ -1.87
CKS1B-201ENST00000308987 SRRM2Q9UQ35 2752 aaKnown RBP3.34□□□□□ -1.88
CKS1B-201ENST00000308987 TRBV6-8A0A0A6YYG3 113 aa3.33□□□□□ -1.88
CKS1B-201ENST00000308987 IGHV3OR16-9A0A0B4J2B5 98 aa3.33□□□□□ -1.88
CKS1B-201ENST00000308987 CCDC179H3BU77 68 aa3.33□□□□□ -1.88
CKS1B-201ENST00000308987 PRM2P04554 102 aa3.33□□□□□ -1.88
CKS1B-201ENST00000308987 RPL35AP18077 110 aaKnown RBP3.33□□□□□ -1.88
CKS1B-201ENST00000308987 SND1-IT1Q9HBX3 110 aa3.33□□□□□ -1.88
CKS1B-201ENST00000308987 APLNQ9ULZ1 77 aa3.33□□□□□ -1.88
CKS1B-201ENST00000308987 KLK5Q9Y337 293 aaPredicted RBP3.33□□□□□ -1.88
CKS1B-201ENST00000308987 C22orf24Q9Y442 160 aa3.33□□□□□ -1.88
CKS1B-201ENST00000308987 IGKV2-28A0A075B6P5 120 aa3.32□□□□□ -1.88
CKS1B-201ENST00000308987 A0A1B0GUV1 79 aa3.32□□□□□ -1.88
CKS1B-201ENST00000308987 PLAC8L1A1L4L8 177 aa3.32□□□□□ -1.88
CKS1B-201ENST00000308987 UQCRQO14949 82 aa3.32□□□□□ -1.88
CKS1B-201ENST00000308987 RTL8CO15255 209 aa3.32□□□□□ -1.88
CKS1B-201ENST00000308987 DEFB4AO15263 64 aa3.32□□□□□ -1.88
CKS1B-201ENST00000308987 DNAL4O96015 105 aa3.32□□□□□ -1.88
CKS1B-201ENST00000308987 IGKV2D-28P01615 120 aa3.32□□□□□ -1.88
CKS1B-201ENST00000308987 GIG44P09565 113 aaPredicted RBP3.32□□□□□ -1.88
CKS1B-201ENST00000308987 CCL18P55774 89 aa3.32□□□□□ -1.88
CKS1B-201ENST00000308987 HIST1H4AP62805 103 aaKnown RBP3.32□□□□□ -1.88
CKS1B-201ENST00000308987 Q8IZM0 81 aa3.32□□□□□ -1.88
CKS1B-201ENST00000308987 C3orf22Q8N5N4 141 aa3.32□□□□□ -1.88
CKS1B-201ENST00000308987 MIR7-3HGQ8N6C7 128 aa3.32□□□□□ -1.88
CKS1B-201ENST00000308987 LINC00337Q8N6G1 96 aa3.32□□□□□ -1.88
CKS1B-201ENST00000308987 LINC00612Q8N6U2 182 aa3.32□□□□□ -1.88
CKS1B-201ENST00000308987 CSNK1G2-AS1Q8NCQ2 148 aa3.32□□□□□ -1.88
CKS1B-201ENST00000308987 KIR2DL5BQ8NHK3 375 aa3.32□□□□□ -1.88
Retrieved 100 of 20,778 RNA–protein pairs in 76.3 ms