RNA–Protein interactions for RNA: ENST00000301897.5

CCDC88B-201, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best) BASIC

Gene CCDC88B, Length 870 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-201ENST00000301897 IGLV5-39A0A0G2JS06 123 aa8.42□□□□□ -1.06
CCDC88B-201ENST00000301897 ERG28Q9UKR5 140 aa8.42□□□□□ -1.06
CCDC88B-201ENST00000301897 ASB16-AS1Q495Z4 193 aa8.41□□□□□ -1.06
CCDC88B-201ENST00000301897 SFTA2Q6UW10 78 aa8.41□□□□□ -1.06
CCDC88B-201ENST00000301897 HIGD2AQ9BW72 106 aa8.41□□□□□ -1.06
CCDC88B-201ENST00000301897 SPRR4Q96PI1 79 aa8.4□□□□□ -1.06
CCDC88B-201ENST00000301897 IGLC3P0DOY3 106 aa8.39□□□□□ -1.07
CCDC88B-201ENST00000301897 KRTAP13-3Q3SY46 172 aa8.39□□□□□ -1.07
CCDC88B-201ENST00000301897 APOC3P02656 99 aa8.38□□□□□ -1.07
CCDC88B-201ENST00000301897 SEC61BP60468 96 aaKnown RBP8.38□□□□□ -1.07
CCDC88B-201ENST00000301897 FABP9Q0Z7S8 132 aa8.38□□□□□ -1.07
CCDC88B-201ENST00000301897 LCE2DQ5TA82 110 aaPredicted RBP8.38□□□□□ -1.07
CCDC88B-201ENST00000301897 SNAPINO95295 136 aa8.37□□□□□ -1.07
CCDC88B-201ENST00000301897 SPINK1P00995 79 aa8.37□□□□□ -1.07
CCDC88B-201ENST00000301897 FA2HQ7L5A8 372 aa8.37□□□□□ -1.07
CCDC88B-201ENST00000301897 SVBPQ8N300 66 aa8.37□□□□□ -1.07
CCDC88B-201ENST00000301897 YPEL4Q96NS1 127 aa8.37□□□□□ -1.07
CCDC88B-201ENST00000301897 SMCO4Q9NRQ5 59 aa8.37□□□□□ -1.07
CCDC88B-201ENST00000301897 NDUFA12Q9UI09 145 aa8.36□□□□□ -1.07
CCDC88B-201ENST00000301897 ZNF22P17026 224 aaPredicted RBP8.35□□□□□ -1.07
CCDC88B-201ENST00000301897 Q8NBF4 154 aa8.35□□□□□ -1.07
CCDC88B-201ENST00000301897 Q8NDZ9 215 aa8.35□□□□□ -1.07
CCDC88B-201ENST00000301897 URB1-AS1Q96HZ7 61 aa8.35□□□□□ -1.07
CCDC88B-201ENST00000301897 NDUFA5Q16718 116 aa8.34□□□□□ -1.07
CCDC88B-201ENST00000301897 FAM19A2Q8N3H0 131 aa8.34□□□□□ -1.07
CCDC88B-201ENST00000301897 ZNF625Q96I27 306 aaPredicted RBP8.34□□□□□ -1.07
CCDC88B-201ENST00000301897 TRAPPC1Q9Y5R8 145 aa8.34□□□□□ -1.07
CCDC88B-201ENST00000301897 NDUFA6P56556 154 aa8.33□□□□□ -1.08
CCDC88B-201ENST00000301897 C18orf32Q8TCD1 76 aa8.33□□□□□ -1.08
CCDC88B-201ENST00000301897 A0A096LNJ9 63 aa8.32□□□□□ -1.08
CCDC88B-201ENST00000301897 PRYO14603 147 aa8.32□□□□□ -1.08
CCDC88B-201ENST00000301897 LINC00614P0C842 121 aa8.32□□□□□ -1.08
CCDC88B-201ENST00000301897 LINC00158P58513 81 aa8.31□□□□□ -1.08
CCDC88B-201ENST00000301897 RPS29P62273 56 aaKnown RBP8.31□□□□□ -1.08
CCDC88B-201ENST00000301897 DAND5Q8N907 189 aa8.31□□□□□ -1.08
CCDC88B-201ENST00000301897 TMEM170BQ5T4T1 132 aa8.29□□□□□ -1.08
CCDC88B-201ENST00000301897 ETDCA0A1B0GVM5 59 aa8.28□□□□□ -1.08
CCDC88B-201ENST00000301897 C11orf86A6NJI1 115 aa8.28□□□□□ -1.08
CCDC88B-201ENST00000301897 ATP6V1G1O75348 118 aa8.28□□□□□ -1.08
CCDC88B-201ENST00000301897 LINC00483Q53H64 154 aa8.28□□□□□ -1.08
CCDC88B-201ENST00000301897 KCNQ1DNQ9H478 68 aa8.28□□□□□ -1.08
CCDC88B-201ENST00000301897 CRCT1Q9UGL9 99 aa8.28□□□□□ -1.08
CCDC88B-201ENST00000301897 SPRR1AP35321 89 aa8.27□□□□□ -1.09
CCDC88B-201ENST00000301897 S100A12P80511 92 aa8.27□□□□□ -1.09
CCDC88B-201ENST00000301897 SMCR5Q8TEV8 140 aa8.27□□□□□ -1.09
CCDC88B-201ENST00000301897 KRTAP4-1Q9BYQ7 146 aa8.27□□□□□ -1.09
CCDC88B-201ENST00000301897 SLC25A20O43772 301 aa8.26□□□□□ -1.09
CCDC88B-201ENST00000301897 HBDP02042 147 aa8.26□□□□□ -1.09
CCDC88B-201ENST00000301897 SSBP3-AS1Q7Z2R9 100 aa8.26□□□□□ -1.09
CCDC88B-201ENST00000301897 BAGE3Q86Y29 109 aa8.26□□□□□ -1.09
CCDC88B-201ENST00000301897 SLC7A5P1Q8MH63 180 aa8.26□□□□□ -1.09
CCDC88B-201ENST00000301897 BOD1L2Q8IYS8 172 aa8.25□□□□□ -1.09
CCDC88B-201ENST00000301897 KRTAP4-16G5E9R7 235 aaPredicted RBP8.24□□□□□ -1.09
CCDC88B-201ENST00000301897 PMCHL1Q16048 86 aa8.24□□□□□ -1.09
CCDC88B-201ENST00000301897 XP32Q5T750 250 aa8.24□□□□□ -1.09
CCDC88B-201ENST00000301897 Q8N377 158 aa8.24□□□□□ -1.09
CCDC88B-201ENST00000301897 FSIP2Q5CZC0 6907 aa8.24□□□□□ -1.09
CCDC88B-201ENST00000301897 A0A0U1RRA0 63 aa8.23□□□□□ -1.09
CCDC88B-201ENST00000301897 LINC00587B1AMM8 73 aa8.23□□□□□ -1.09
CCDC88B-201ENST00000301897 MOBPQ13875 183 aa8.23□□□□□ -1.09
CCDC88B-201ENST00000301897 GAGE2AQ6NT46 116 aa8.23□□□□□ -1.09
CCDC88B-201ENST00000301897 NCR3O14931 201 aa8.22□□□□□ -1.09
CCDC88B-201ENST00000301897 CHCHD1Q96BP2 118 aaKnown RBP8.22□□□□□ -1.09
CCDC88B-201ENST00000301897 IGLV9-49A0A0B4J1Y8 123 aa8.21□□□□□ -1.1
CCDC88B-201ENST00000301897 TMEM223A0PJW6 202 aa8.21□□□□□ -1.1
CCDC88B-201ENST00000301897 SMIM13P0DJ93 91 aa8.21□□□□□ -1.1
CCDC88B-201ENST00000301897 HERV-K104P63124 156 aa8.21□□□□□ -1.1
CCDC88B-201ENST00000301897 MEIG1Q5JSS6 88 aa8.21□□□□□ -1.1
CCDC88B-201ENST00000301897 CHTOPQ9Y3Y2 248 aaKnown RBP8.21□□□□□ -1.1
CCDC88B-201ENST00000301897 TRBV10-3A0A0K0K1G6 114 aa8.2□□□□□ -1.1
CCDC88B-201ENST00000301897 MIR7-3HGQ8N6C7 128 aa8.19□□□□□ -1.1
CCDC88B-201ENST00000301897 MAP1LC3CQ9BXW4 147 aa8.19□□□□□ -1.1
CCDC88B-201ENST00000301897 COLCA2A8K830 154 aa8.18□□□□□ -1.1
CCDC88B-201ENST00000301897 B5MCH6 92 aa8.18□□□□□ -1.1
CCDC88B-201ENST00000301897 TRGC2P03986 189 aa8.18□□□□□ -1.1
CCDC88B-201ENST00000301897 TRAV12-1A0A0B4J245 112 aa8.17□□□□□ -1.1
CCDC88B-201ENST00000301897 CFC1BP0CG36 223 aa8.17□□□□□ -1.1
CCDC88B-201ENST00000301897 TRBV10-2A0A0K0K1G8 114 aa8.15□□□□□ -1.1
CCDC88B-201ENST00000301897 MYMXA0A1B0GTQ4 84 aa8.15□□□□□ -1.1
CCDC88B-201ENST00000301897 ERC2-IT1O76042 136 aa8.15□□□□□ -1.1
CCDC88B-201ENST00000301897 LINC00310P59036 64 aa8.15□□□□□ -1.1
CCDC88B-201ENST00000301897 LCE2CQ5TA81 110 aa8.15□□□□□ -1.1
CCDC88B-201ENST00000301897 Q6ZRX8 168 aa8.15□□□□□ -1.1
CCDC88B-201ENST00000301897 IFI27L1Q96BM0 104 aa8.15□□□□□ -1.1
CCDC88B-201ENST00000301897 DDTP30046 118 aa8.14□□□□□ -1.11
CCDC88B-201ENST00000301897 JOSD1Q15040 202 aaPredicted RBP8.14□□□□□ -1.11
CCDC88B-201ENST00000301897 LOC107984156A0A0G2JMH3 177 aa8.13□□□□□ -1.11
CCDC88B-201ENST00000301897 HSBP1O75506 76 aa8.13□□□□□ -1.11
CCDC88B-201ENST00000301897 C9orf153Q5TBE3 101 aa8.13□□□□□ -1.11
CCDC88B-201ENST00000301897 ARL17AQ8IVW1 177 aa8.13□□□□□ -1.11
CCDC88B-201ENST00000301897 Q9BRP9 147 aa8.13□□□□□ -1.11
CCDC88B-201ENST00000301897 SERF1AO75920 110 aa8.11□□□□□ -1.11
CCDC88B-201ENST00000301897 SPANXB1Q9NS25 103 aaPredicted RBP8.11□□□□□ -1.11
CCDC88B-201ENST00000301897 C5orf52A6NGY3 159 aa8.1□□□□□ -1.11
CCDC88B-201ENST00000301897 MT1HP80294 61 aa8.09□□□□□ -1.11
CCDC88B-201ENST00000301897 S100A7L2Q5SY68 101 aa8.09□□□□□ -1.11
CCDC88B-201ENST00000301897 MIEN1Q9BRT3 115 aa8.09□□□□□ -1.11
CCDC88B-201ENST00000301897 LIMD2Q9BT23 127 aa8.09□□□□□ -1.11
CCDC88B-201ENST00000301897 LEPROTL1O95214 131 aa8.08□□□□□ -1.12
CCDC88B-201ENST00000301897 KRTAP19-2Q3LHN2 52 aa8.08□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 69.5 ms