RNA–Protein interactions for RNA: ENST00000295550.8

COL6A3-201, Transcript of collagen type VI alpha 3 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL6A3, Length 10,749 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-201ENST00000295550 SMIM29Q86T20 159 aa7.01□□□□□ -1.29
COL6A3-201ENST00000295550 CFAP46Q8IYW2 2715 aa7.01□□□□□ -1.29
COL6A3-201ENST00000295550 SPINT4Q6UDR6 99 aa7.01□□□□□ -1.29
COL6A3-201ENST00000295550 C6orf223Q8N319 242 aa7.01□□□□□ -1.29
COL6A3-201ENST00000295550 RPS28P62857 69 aaKnown RBP7□□□□□ -1.29
COL6A3-201ENST00000295550 LINC00337Q8N6G1 96 aa7□□□□□ -1.29
COL6A3-201ENST00000295550 FAM19A4Q96LR4 140 aa7□□□□□ -1.29
COL6A3-201ENST00000295550 AVPP01185 164 aa7□□□□□ -1.29
COL6A3-201ENST00000295550 LINC01556Q5JQF7 62 aa7□□□□□ -1.29
COL6A3-201ENST00000295550 A0A1W2PPR1 153 aa6.99□□□□□ -1.29
COL6A3-201ENST00000295550 ATP11AUNQ6ZP68 121 aa6.99□□□□□ -1.29
COL6A3-201ENST00000295550 Q6ZTC4 211 aa6.99□□□□□ -1.29
COL6A3-201ENST00000295550 C6orf48Q9UBA6 75 aa6.99□□□□□ -1.29
COL6A3-201ENST00000295550 LY6G6CO95867 125 aa6.99□□□□□ -1.29
COL6A3-201ENST00000295550 TRANK1O15050 2925 aa6.98□□□□□ -1.29
COL6A3-201ENST00000295550 TP53AIP1Q9HCN2 124 aa6.98□□□□□ -1.29
COL6A3-201ENST00000295550 KIF25-AS1Q9Y6Z4 181 aa6.98□□□□□ -1.29
COL6A3-201ENST00000295550 ACYP2P14621 99 aa6.98□□□□□ -1.29
COL6A3-201ENST00000295550 C2orf48Q96LS8 159 aa6.98□□□□□ -1.29
COL6A3-201ENST00000295550 INAFM1C9JVW0 142 aa6.98□□□□□ -1.29
COL6A3-201ENST00000295550 ODF3L2Q3SX64 289 aa6.98□□□□□ -1.29
COL6A3-201ENST00000295550 NOTCH1P46531 2555 aa6.98□□□□□ -1.29
COL6A3-201ENST00000295550 FLNBO75369 2602 aaKnown RBP6.98□□□□□ -1.29
COL6A3-201ENST00000295550 IGLV5-52A0A0A0MRZ9 124 aa6.98□□□□□ -1.29
COL6A3-201ENST00000295550 F8WDY8 70 aa6.98□□□□□ -1.29
COL6A3-201ENST00000295550 IGLV4-60A0A075B6I1 120 aa6.97□□□□□ -1.29
COL6A3-201ENST00000295550 LINC01006Q8NI28 216 aa6.96□□□□□ -1.29
COL6A3-201ENST00000295550 FLNAP21333 2647 aaKnown RBP6.96□□□□□ -1.3
COL6A3-201ENST00000295550 STAB1Q9NY15 2570 aa6.96□□□□□ -1.3
COL6A3-201ENST00000295550 KLK9Q2XQG4 91 aa6.94□□□□□ -1.3
COL6A3-201ENST00000295550 IGLV8-61A0A075B6I0 122 aa6.94□□□□□ -1.3
COL6A3-201ENST00000295550 NUPR2A6NF83 97 aa6.94□□□□□ -1.3
COL6A3-201ENST00000295550 A0A1B0GUV1 79 aa6.94□□□□□ -1.3
COL6A3-201ENST00000295550 ITPR3Q14573 2671 aa6.94□□□□□ -1.3
COL6A3-201ENST00000295550 SPATA3Q8NHX4 192 aa6.93□□□□□ -1.3
COL6A3-201ENST00000295550 Q6ZSN1 163 aa6.93□□□□□ -1.3
COL6A3-201ENST00000295550 IGLV5-39A0A0G2JS06 123 aa6.93□□□□□ -1.3
COL6A3-201ENST00000295550 PRO0461Q9UI25 63 aa6.93□□□□□ -1.3
COL6A3-201ENST00000295550 LINC00315P59091 139 aa6.92□□□□□ -1.3
COL6A3-201ENST00000295550 IGLV1-51P01701 117 aa6.92□□□□□ -1.3
COL6A3-201ENST00000295550 FHL2Q14192 279 aa6.92□□□□□ -1.3
COL6A3-201ENST00000295550 C11orf72Q8NBR9 251 aa6.92□□□□□ -1.3
COL6A3-201ENST00000295550 CHD6Q8TD26 2715 aa6.91□□□□□ -1.3
COL6A3-201ENST00000295550 LINC01561Q8N1V8 128 aa6.91□□□□□ -1.3
COL6A3-201ENST00000295550 SSBP3-AS1Q7Z2R9 100 aa6.91□□□□□ -1.3
COL6A3-201ENST00000295550 Q8N2B8 174 aa6.9□□□□□ -1.3
COL6A3-201ENST00000295550 CHD9Q3L8U1 2897 aa6.9□□□□□ -1.3
COL6A3-201ENST00000295550 KIAA0087Q14695 138 aa6.9□□□□□ -1.3
COL6A3-201ENST00000295550 CEP350Q5VT06 3117 aa6.9□□□□□ -1.3
COL6A3-201ENST00000295550 IGLV5-45A0A087WSX0 123 aa6.9□□□□□ -1.31
COL6A3-201ENST00000295550 BCE1O60756 84 aa6.89□□□□□ -1.31
COL6A3-201ENST00000295550 LY6G6DO95868 133 aa6.89□□□□□ -1.31
COL6A3-201ENST00000295550 FSHBP01225 129 aa6.89□□□□□ -1.31
COL6A3-201ENST00000295550 C16orf95Q9H693 158 aa6.89□□□□□ -1.31
COL6A3-201ENST00000295550 CHD7Q9P2D1 2997 aa6.88□□□□□ -1.31
COL6A3-201ENST00000295550 UTRNP46939 3433 aa6.88□□□□□ -1.31
COL6A3-201ENST00000295550 GCN1Q92616 2671 aaKnown RBP6.88□□□□□ -1.31
COL6A3-201ENST00000295550 TRAV22A0A0B4J277 110 aa6.88□□□□□ -1.31
COL6A3-201ENST00000295550 LOC110117498A0A087WWA1 95 aa6.88□□□□□ -1.31
COL6A3-201ENST00000295550 H3BPC8 53 aa6.87□□□□□ -1.31
COL6A3-201ENST00000295550 TM2D3Q9BRN9 247 aa6.87□□□□□ -1.31
COL6A3-201ENST00000295550 MOBPQ13875 183 aa6.87□□□□□ -1.31
COL6A3-201ENST00000295550 MDFIQ99750 246 aa6.87□□□□□ -1.31
COL6A3-201ENST00000295550 SMCPP49901 116 aaPredicted RBP6.87□□□□□ -1.31
COL6A3-201ENST00000295550 FAM218AQ96MZ4 157 aa6.86□□□□□ -1.31
COL6A3-201ENST00000295550 Q6ZQT0 140 aa6.86□□□□□ -1.31
COL6A3-201ENST00000295550 COL6A5A8TX70 2615 aa6.85□□□□□ -1.31
COL6A3-201ENST00000295550 A0A1B0GW54 56 aa6.85□□□□□ -1.31
COL6A3-201ENST00000295550 Q6ZRU5 148 aa6.84□□□□□ -1.31
COL6A3-201ENST00000295550 PCNTO95613 3336 aa6.84□□□□□ -1.31
COL6A3-201ENST00000295550 DMBT1Q9UGM3 2413 aaPredicted RBP6.84□□□□□ -1.31
COL6A3-201ENST00000295550 SPACA4Q8TDM5 124 aa6.83□□□□□ -1.32
COL6A3-201ENST00000295550 LYPD5Q6UWN5 251 aa6.83□□□□□ -1.32
COL6A3-201ENST00000295550 SMCR5Q8TEV8 140 aa6.82□□□□□ -1.32
COL6A3-201ENST00000295550 C22orf24Q9Y442 160 aa6.82□□□□□ -1.32
COL6A3-201ENST00000295550 KRTAP10-9P60411 292 aa6.82□□□□□ -1.32
COL6A3-201ENST00000295550 C5orf42Q9H799 3197 aa6.81□□□□□ -1.32
COL6A3-201ENST00000295550 LINC01600Q96MT4 127 aa6.81□□□□□ -1.32
COL6A3-201ENST00000295550 BAHCC1Q9P281 2608 aa6.81□□□□□ -1.32
COL6A3-201ENST00000295550 ERC2-IT1O76042 136 aa6.8□□□□□ -1.32
COL6A3-201ENST00000295550 Q8NBF4 154 aa6.8□□□□□ -1.32
COL6A3-201ENST00000295550 COA5Q86WW8 74 aa6.8□□□□□ -1.32
COL6A3-201ENST00000295550 CYP4F30PQ9H0H9 118 aa6.8□□□□□ -1.32
COL6A3-201ENST00000295550 Q6ZRX8 168 aa6.8□□□□□ -1.32
COL6A3-201ENST00000295550 C1orf134Q5TEV5 83 aa6.79□□□□□ -1.32
COL6A3-201ENST00000295550 IGHV3OR16-9A0A0B4J2B5 98 aa6.79□□□□□ -1.32
COL6A3-201ENST00000295550 ELOF1P60002 83 aaKnown RBP6.79□□□□□ -1.32
COL6A3-201ENST00000295550 CD164Q04900 197 aa6.79□□□□□ -1.32
COL6A3-201ENST00000295550 STAB2Q8WWQ8 2551 aa6.79□□□□□ -1.32
COL6A3-201ENST00000295550 FHL3Q13643 280 aa6.79□□□□□ -1.32
COL6A3-201ENST00000295550 LITAFQ99732 161 aa6.79□□□□□ -1.32
COL6A3-201ENST00000295550 CRIPTQ9P021 101 aa6.78□□□□□ -1.32
COL6A3-201ENST00000295550 LINC00313P59037 77 aa6.78□□□□□ -1.32
COL6A3-201ENST00000295550 MAP1AP78559 2803 aaPredicted RBP6.77□□□□□ -1.33
COL6A3-201ENST00000295550 KTN1-AS1Q86SY8 53 aa6.77□□□□□ -1.33
COL6A3-201ENST00000295550 UNC79Q9P2D8 2635 aa6.77□□□□□ -1.33
COL6A3-201ENST00000295550 LINC00476Q8WZB0 136 aa6.77□□□□□ -1.33
COL6A3-201ENST00000295550 TEX15Q9BXT5 2789 aa6.77□□□□□ -1.33
COL6A3-201ENST00000295550 A8MUN3 132 aa6.76□□□□□ -1.33
COL6A3-201ENST00000295550 HTTP42858 3142 aa6.76□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 56.2 ms