RNA–Protein interactions for RNA: ENST00000293441.5

SHANK1-201, Transcript of SH3 and multiple ankyrin repeat domains 1, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene SHANK1, Length 6,643 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK1-201ENST00000293441 C16orf90A8MZG2 172 aa11.88□□□□□ -0.51
SHANK1-201ENST00000293441 Q9UF83 564 aa11.88□□□□□ -0.51
SHANK1-201ENST00000293441 NBDYA0A0U1RRE5 68 aa11.87□□□□□ -0.51
SHANK1-201ENST00000293441 LINC01546A6NGU7 62 aa11.86□□□□□ -0.51
SHANK1-201ENST00000293441 LINC00588Q9Y4M8 146 aa11.85□□□□□ -0.51
SHANK1-201ENST00000293441 Q8NAQ8 132 aa11.85□□□□□ -0.51
SHANK1-201ENST00000293441 C7orf65Q6ZTY9 151 aa11.85□□□□□ -0.51
SHANK1-201ENST00000293441 CENPFP49454 3210 aa11.85□□□□□ -0.51
SHANK1-201ENST00000293441 CRYGAP11844 174 aa11.84□□□□□ -0.51
SHANK1-201ENST00000293441 SPATA3Q8NHX4 192 aa11.84□□□□□ -0.51
SHANK1-201ENST00000293441 TLN2Q9Y4G6 2542 aa11.84□□□□□ -0.51
SHANK1-201ENST00000293441 C1orf64Q8NEQ6 169 aa11.83□□□□□ -0.52
SHANK1-201ENST00000293441 SMIM29Q86T20 159 aa11.82□□□□□ -0.52
SHANK1-201ENST00000293441 PSPHP1O15172 72 aa11.82□□□□□ -0.52
SHANK1-201ENST00000293441 CXCL6P80162 114 aa11.81□□□□□ -0.52
SHANK1-201ENST00000293441 TMEM254Q8TBM7 123 aa11.81□□□□□ -0.52
SHANK1-201ENST00000293441 TYMSOSQ8TAI1 123 aa11.8□□□□□ -0.52
SHANK1-201ENST00000293441 ANKRD11Q6UB99 2663 aaPredicted RBP11.8□□□□□ -0.52
SHANK1-201ENST00000293441 Q6ZRP5 223 aa11.78□□□□□ -0.52
SHANK1-201ENST00000293441 WWC2-AS2Q96NR7 200 aa11.78□□□□□ -0.52
SHANK1-201ENST00000293441 EPM2AB3EWF7 344 aa11.78□□□□□ -0.52
SHANK1-201ENST00000293441 hDV103S1A0JD37 113 aa11.77□□□□□ -0.52
SHANK1-201ENST00000293441 ELOF1P60002 83 aaKnown RBP11.77□□□□□ -0.52
SHANK1-201ENST00000293441 IGLV5-45A0A087WSX0 123 aa11.76□□□□□ -0.53
SHANK1-201ENST00000293441 C1orf195Q5TG92 126 aa11.76□□□□□ -0.53
SHANK1-201ENST00000293441 USP9XQ93008 2570 aaPredicted RBP11.75□□□□□ -0.53
SHANK1-201ENST00000293441 LINC00476Q8WZB0 136 aa11.74□□□□□ -0.53
SHANK1-201ENST00000293441 FAM218AQ96MZ4 157 aa11.74□□□□□ -0.53
SHANK1-201ENST00000293441 PMAIP1Q13794 54 aa11.74□□□□□ -0.53
SHANK1-201ENST00000293441 Q6ZRX8 168 aa11.74□□□□□ -0.53
SHANK1-201ENST00000293441 ST20-AS1Q8NBB2 130 aa11.73□□□□□ -0.53
SHANK1-201ENST00000293441 Q8NBF4 154 aa11.73□□□□□ -0.53
SHANK1-201ENST00000293441 LINC00313P59037 77 aa11.71□□□□□ -0.54
SHANK1-201ENST00000293441 GVQW2A0A096LPI5 108 aaPredicted RBP11.7□□□□□ -0.54
SHANK1-201ENST00000293441 FAM168BA1KXE4 195 aa11.68□□□□□ -0.54
SHANK1-201ENST00000293441 TP53AIP1Q9HCN2 124 aa11.68□□□□□ -0.54
SHANK1-201ENST00000293441 BCE1O60756 84 aa11.68□□□□□ -0.54
SHANK1-201ENST00000293441 KRTAP10-11P60412 298 aa11.67□□□□□ -0.54
SHANK1-201ENST00000293441 RPL37AP61513 92 aaKnown RBP11.67□□□□□ -0.54
SHANK1-201ENST00000293441 ZNF462Q96JM2 2506 aa11.67□□□□□ -0.54
SHANK1-201ENST00000293441 DNAH10OSP0CZ25 163 aa11.67□□□□□ -0.54
SHANK1-201ENST00000293441 PLA2G1BP04054 148 aaKnown RBP11.66□□□□□ -0.54
SHANK1-201ENST00000293441 J3QL48 77 aa11.66□□□□□ -0.54
SHANK1-201ENST00000293441 ANKRD17O75179 2603 aaKnown RBP11.65□□□□□ -0.54
SHANK1-201ENST00000293441 Q96NJ1 140 aa11.64□□□□□ -0.55
SHANK1-201ENST00000293441 SPTBN4Q9H254 2564 aa11.64□□□□□ -0.55
SHANK1-201ENST00000293441 CEP295Q9C0D2 2601 aa11.64□□□□□ -0.55
SHANK1-201ENST00000293441 SETD2Q9BYW2 2564 aaPredicted RBP11.64□□□□□ -0.55
SHANK1-201ENST00000293441 Q6ZQT0 140 aa11.64□□□□□ -0.55
SHANK1-201ENST00000293441 K7EIL1 84 aa11.63□□□□□ -0.55
SHANK1-201ENST00000293441 ACYP2P14621 99 aa11.63□□□□□ -0.55
SHANK1-201ENST00000293441 CDIP1Q9H305 208 aa11.63□□□□□ -0.55
SHANK1-201ENST00000293441 A0A1B0GU69 56 aa11.63□□□□□ -0.55
SHANK1-201ENST00000293441 SMCPP49901 116 aaPredicted RBP11.59□□□□□ -0.55
SHANK1-201ENST00000293441 CSNK1G2-AS1Q8NCQ2 148 aa11.58□□□□□ -0.56
SHANK1-201ENST00000293441 CHD8Q9HCK8 2581 aa11.58□□□□□ -0.56
SHANK1-201ENST00000293441 SERTAD4-AS1Q5TG53 156 aa11.58□□□□□ -0.56
SHANK1-201ENST00000293441 USP9YO00507 2555 aaPredicted RBP11.58□□□□□ -0.56
SHANK1-201ENST00000293441 ATP11AUNQ6ZP68 121 aa11.57□□□□□ -0.56
SHANK1-201ENST00000293441 A0A1B0GW54 56 aa11.56□□□□□ -0.56
SHANK1-201ENST00000293441 LOC110117498A0A087WWA1 95 aa11.56□□□□□ -0.56
SHANK1-201ENST00000293441 KRTAP10-3P60369 221 aa11.56□□□□□ -0.56
SHANK1-201ENST00000293441 VPREB1P12018 145 aa11.56□□□□□ -0.56
SHANK1-201ENST00000293441 KLK9Q2XQG4 91 aa11.55□□□□□ -0.56
SHANK1-201ENST00000293441 UTRNP46939 3433 aa11.55□□□□□ -0.56
SHANK1-201ENST00000293441 SPAG11AQ6PDA7 123 aa11.53□□□□□ -0.56
SHANK1-201ENST00000293441 IGLV6-57P01721 117 aa11.52□□□□□ -0.57
SHANK1-201ENST00000293441 PKD1L2Q7Z442 2459 aa11.51□□□□□ -0.57
SHANK1-201ENST00000293441 TRAV22A0A0B4J277 110 aa11.51□□□□□ -0.57
SHANK1-201ENST00000293441 C19orf73Q9NVV2 129 aa11.51□□□□□ -0.57
SHANK1-201ENST00000293441 IGLV1-50A0A075B6I6 118 aa11.5□□□□□ -0.57
SHANK1-201ENST00000293441 IGLV8-61A0A075B6I0 122 aa11.49□□□□□ -0.57
SHANK1-201ENST00000293441 A0A096LNT2 108 aa11.48□□□□□ -0.57
SHANK1-201ENST00000293441 LITAFQ99732 161 aa11.47□□□□□ -0.57
SHANK1-201ENST00000293441 TRBV7-4A0A0J9YYF1 115 aa11.47□□□□□ -0.57
SHANK1-201ENST00000293441 MTORP42345 2549 aa11.47□□□□□ -0.57
SHANK1-201ENST00000293441 PRO0461Q9UI25 63 aa11.46□□□□□ -0.57
SHANK1-201ENST00000293441 SMR3BP02814 79 aaPredicted RBP11.46□□□□□ -0.57
SHANK1-201ENST00000293441 POLQO75417 2590 aa11.46□□□□□ -0.58
SHANK1-201ENST00000293441 TM2D3Q9BRN9 247 aa11.45□□□□□ -0.58
SHANK1-201ENST00000293441 ACANP16112 2415 aa11.45□□□□□ -0.58
SHANK1-201ENST00000293441 A8MWP4 228 aa11.45□□□□□ -0.58
SHANK1-201ENST00000293441 H3BPC8 53 aa11.45□□□□□ -0.58
SHANK1-201ENST00000293441 C15orf56Q8N910 161 aa11.45□□□□□ -0.58
SHANK1-201ENST00000293441 C8orf87E5RJ46 101 aa11.44□□□□□ -0.58
SHANK1-201ENST00000293441 COX6B2Q6YFQ2 88 aa11.43□□□□□ -0.58
SHANK1-201ENST00000293441 K7EQZ3 153 aa11.42□□□□□ -0.58
SHANK1-201ENST00000293441 KCNQ1DNQ9H478 68 aa11.42□□□□□ -0.58
SHANK1-201ENST00000293441 A0A087WTM6 91 aa11.42□□□□□ -0.58
SHANK1-201ENST00000293441 FASNP49327 2511 aaKnown RBP11.41□□□□□ -0.58
SHANK1-201ENST00000293441 C9orf92A6NGG3 77 aa11.41□□□□□ -0.58
SHANK1-201ENST00000293441 LINC00304Q8N9R0 145 aa11.41□□□□□ -0.58
SHANK1-201ENST00000293441 MRPL34Q9BQ48 92 aaKnown RBP11.41□□□□□ -0.58
SHANK1-201ENST00000293441 DSCR10P59022 87 aa11.41□□□□□ -0.58
SHANK1-201ENST00000293441 GIG44P09565 113 aaPredicted RBP11.4□□□□□ -0.58
SHANK1-201ENST00000293441 PRR34Q9NV39 138 aa11.38□□□□□ -0.59
SHANK1-201ENST00000293441 ZNF861PO60384 105 aa11.38□□□□□ -0.59
SHANK1-201ENST00000293441 C9orf129Q5T035 196 aaKnown RBP11.38□□□□□ -0.59
SHANK1-201ENST00000293441 IGFL1Q6UW32 110 aa11.38□□□□□ -0.59
SHANK1-201ENST00000293441 LOC101927531A0A1B0GV80 90 aa11.37□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 48.8 ms