RNA–Protein interactions for RNA: ENST00000265560.8

USP4-201, Transcript of ubiquitin specific peptidase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP4, Length 3,126 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-201ENST00000265560 GVQW2A0A096LPI5 108 aaPredicted RBP10.81□□□□□ -0.68
USP4-201ENST00000265560 Q6ZRP5 223 aa10.8□□□□□ -0.68
USP4-201ENST00000265560 IGLV2-33A0A075B6J2 118 aaPredicted RBP10.8□□□□□ -0.68
USP4-201ENST00000265560 TRBV30A0A0K0K1B3 111 aa10.8□□□□□ -0.68
USP4-201ENST00000265560 SMIM11BQ8TCY0 68 aa10.8□□□□□ -0.68
USP4-201ENST00000265560 RPL18AQ02543 176 aaKnown RBP10.79□□□□□ -0.68
USP4-201ENST00000265560 RMI2Q96E14 147 aa10.78□□□□□ -0.68
USP4-201ENST00000265560 TRAV13-2A0A0B4J235 113 aa10.78□□□□□ -0.68
USP4-201ENST00000265560 DNAH2Q9P225 4427 aa10.77□□□□□ -0.68
USP4-201ENST00000265560 NBDYA0A0U1RRE5 68 aa10.77□□□□□ -0.69
USP4-201ENST00000265560 C9JAW5 83 aa10.77□□□□□ -0.69
USP4-201ENST00000265560 C2orf48Q96LS8 159 aa10.77□□□□□ -0.69
USP4-201ENST00000265560 CARD19Q96LW7 228 aa10.77□□□□□ -0.69
USP4-201ENST00000265560 COX6CP09669 75 aa10.76□□□□□ -0.69
USP4-201ENST00000265560 LINC01620Q4KN68 170 aa10.76□□□□□ -0.69
USP4-201ENST00000265560 MUC7Q8TAX7 377 aa10.76□□□□□ -0.69
USP4-201ENST00000265560 SMCPP49901 116 aaPredicted RBP10.76□□□□□ -0.69
USP4-201ENST00000265560 ETDBQ3ZM63 59 aa10.76□□□□□ -0.69
USP4-201ENST00000265560 FUSP35637 526 aaKnown RBP eCLIP10.75□□□□□ -0.69
USP4-201ENST00000265560 NDUFC2-KCTD14E9PQ53 114 aa10.75□□□□□ -0.69
USP4-201ENST00000265560 LYRM7Q5U5X0 104 aa10.75□□□□□ -0.69
USP4-201ENST00000265560 FAM218AQ96MZ4 157 aa10.75□□□□□ -0.69
USP4-201ENST00000265560 PRO0461Q9UI25 63 aa10.75□□□□□ -0.69
USP4-201ENST00000265560 TRBV20-1A0A075B6N2 111 aa10.73□□□□□ -0.69
USP4-201ENST00000265560 GAGE2BQ13066 116 aa10.73□□□□□ -0.69
USP4-201ENST00000265560 S100A7L2Q5SY68 101 aa10.73□□□□□ -0.69
USP4-201ENST00000265560 LY6G6CO95867 125 aa10.72□□□□□ -0.69
USP4-201ENST00000265560 C9orf129Q5T035 196 aaKnown RBP10.72□□□□□ -0.69
USP4-201ENST00000265560 FAM168BA1KXE4 195 aa10.72□□□□□ -0.69
USP4-201ENST00000265560 ATXN8Q156A1 80 aa10.72□□□□□ -0.69
USP4-201ENST00000265560 F8W1H4 67 aa10.7□□□□□ -0.7
USP4-201ENST00000265560 PPDPFQ9H3Y8 114 aa10.7□□□□□ -0.7
USP4-201ENST00000265560 NDUFC2O95298 119 aa10.69□□□□□ -0.7
USP4-201ENST00000265560 RPL28P46779 137 aaKnown RBP10.69□□□□□ -0.7
USP4-201ENST00000265560 A0A087WYN8 130 aa10.69□□□□□ -0.7
USP4-201ENST00000265560 TRBV10-3A0A0K0K1G6 114 aa10.69□□□□□ -0.7
USP4-201ENST00000265560 SERTAD4-AS1Q5TG53 156 aa10.69□□□□□ -0.7
USP4-201ENST00000265560 IGKV2-24A0A0C4DH68 120 aa10.69□□□□□ -0.7
USP4-201ENST00000265560 SLC25A20O43772 301 aa10.69□□□□□ -0.7
USP4-201ENST00000265560 LST1O00453 97 aa10.68□□□□□ -0.7
USP4-201ENST00000265560 C6orf99Q4VX62 202 aa10.67□□□□□ -0.7
USP4-201ENST00000265560 TMEM126AQ9H061 195 aa10.67□□□□□ -0.7
USP4-201ENST00000265560 VPREB1P12018 145 aa10.67□□□□□ -0.7
USP4-201ENST00000265560 TTC32Q5I0X7 151 aa10.67□□□□□ -0.7
USP4-201ENST00000265560 HYDINQ4G0P3 5121 aa10.66□□□□□ -0.7
USP4-201ENST00000265560 OCIAD2Q56VL3 154 aa10.65□□□□□ -0.7
USP4-201ENST00000265560 WWC2-AS2Q96NR7 200 aa10.65□□□□□ -0.7
USP4-201ENST00000265560 Q6ZRN7 208 aaPredicted RBP10.65□□□□□ -0.7
USP4-201ENST00000265560 LRCOL1A6NCL2 159 aa10.64□□□□□ -0.71
USP4-201ENST00000265560 RPL37AP8A6NKH3 93 aa10.63□□□□□ -0.71
USP4-201ENST00000265560 RNF151Q2KHN1 245 aa10.63□□□□□ -0.71
USP4-201ENST00000265560 FAM19A5Q7Z5A7 132 aaPredicted RBP10.63□□□□□ -0.71
USP4-201ENST00000265560 CHTF8P0CG12 524 aa10.63□□□□□ -0.71
USP4-201ENST00000265560 SRRM2Q9UQ35 2752 aaKnown RBP10.63□□□□□ -0.71
USP4-201ENST00000265560 ANKRD29Q8N6D5 301 aa10.62□□□□□ -0.71
USP4-201ENST00000265560 A0A1B0GV72 72 aa10.62□□□□□ -0.71
USP4-201ENST00000265560 IGLV6-57P01721 117 aa10.62□□□□□ -0.71
USP4-201ENST00000265560 KRTAP7-1Q8IUC3 87 aa10.62□□□□□ -0.71
USP4-201ENST00000265560 A0A096LNI7 61 aa10.61□□□□□ -0.71
USP4-201ENST00000265560 TRBV10-2A0A0K0K1G8 114 aa10.6□□□□□ -0.71
USP4-201ENST00000265560 NKAPP1Q8N9T2 125 aa10.6□□□□□ -0.71
USP4-201ENST00000265560 TEX49A0A1B0GTD5 131 aa10.59□□□□□ -0.71
USP4-201ENST00000265560 F8WDY8 70 aa10.59□□□□□ -0.71
USP4-201ENST00000265560 HECTD4Q9Y4D8 3996 aa10.59□□□□□ -0.71
USP4-201ENST00000265560 LOC107984640A0A0U1RRK4 108 aa10.58□□□□□ -0.72
USP4-201ENST00000265560 C7orf33Q8WU49 177 aa10.58□□□□□ -0.72
USP4-201ENST00000265560 TRAV23DV6A0A075B6W5 121 aa10.58□□□□□ -0.72
USP4-201ENST00000265560 M0R378 163 aa10.58□□□□□ -0.72
USP4-201ENST00000265560 TLX1NBP0CAT3 122 aa10.58□□□□□ -0.72
USP4-201ENST00000265560 Q6ZR54 194 aa10.58□□□□□ -0.72
USP4-201ENST00000265560 BAALC-AS2P0C853 105 aa10.57□□□□□ -0.72
USP4-201ENST00000265560 H0YGX0 51 aa10.56□□□□□ -0.72
USP4-201ENST00000265560 DNAL4O96015 105 aa10.56□□□□□ -0.72
USP4-201ENST00000265560 TEN1Q86WV5 123 aa10.56□□□□□ -0.72
USP4-201ENST00000265560 LINC00476Q8WZB0 136 aa10.56□□□□□ -0.72
USP4-201ENST00000265560 ZNF73O43830 326 aaPredicted RBP10.55□□□□□ -0.72
USP4-201ENST00000265560 CNBPP62633 177 aaKnown RBP10.55□□□□□ -0.72
USP4-201ENST00000265560 A0A1W2PNN7 141 aa10.55□□□□□ -0.72
USP4-201ENST00000265560 C22orf24Q9Y442 160 aa10.55□□□□□ -0.72
USP4-201ENST00000265560 A0A087WTM6 91 aa10.54□□□□□ -0.72
USP4-201ENST00000265560 PANO1I0J062 215 aa10.54□□□□□ -0.72
USP4-201ENST00000265560 TRACP01848 142 aa10.54□□□□□ -0.72
USP4-201ENST00000265560 DNAH6Q9C0G6 4158 aa10.54□□□□□ -0.72
USP4-201ENST00000265560 Q8N814 137 aa10.53□□□□□ -0.72
USP4-201ENST00000265560 LINC00167Q96N53 147 aa10.53□□□□□ -0.72
USP4-201ENST00000265560 K7ERU9 68 aa10.53□□□□□ -0.72
USP4-201ENST00000265560 C14orf177Q52M58 125 aa10.53□□□□□ -0.72
USP4-201ENST00000265560 C1orf134Q5TEV5 83 aa10.53□□□□□ -0.72
USP4-201ENST00000265560 DPH3Q96FX2 82 aa10.53□□□□□ -0.72
USP4-201ENST00000265560 DIRC1Q969H9 104 aa10.52□□□□□ -0.72
USP4-201ENST00000265560 FRAS1Q86XX4 4008 aa10.52□□□□□ -0.73
USP4-201ENST00000265560 DNAH17Q9UFH2 4485 aa10.51□□□□□ -0.73
USP4-201ENST00000265560 C16orf90A8MZG2 172 aa10.5□□□□□ -0.73
USP4-201ENST00000265560 C9orf163Q8N9P6 203 aa10.5□□□□□ -0.73
USP4-201ENST00000265560 LINC00575Q6W349 94 aa10.49□□□□□ -0.73
USP4-201ENST00000265560 H3BT86 120 aa10.49□□□□□ -0.73
USP4-201ENST00000265560 TNP2Q05952 138 aa10.49□□□□□ -0.73
USP4-201ENST00000265560 MRPL55Q7Z7F7 128 aaKnown RBP10.49□□□□□ -0.73
USP4-201ENST00000265560 PPDPFLQ8WWR9 84 aa10.48□□□□□ -0.73
USP4-201ENST00000265560 M0QXV9 152 aa10.48□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 49.7 ms