RNA–Protein interactions for RNA: ENST00000225696.8

NUP88-201, Transcript of nucleoporin 88, humanhuman

TSL 5

Gene NUP88, Length 2,194 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-201ENST00000225696 LINC00575Q6W349 94 aa8.42□□□□□ -1.06
NUP88-201ENST00000225696 C16orf95Q9H693 158 aa8.42□□□□□ -1.06
NUP88-201ENST00000225696 IGHV4-28A0A0C4DH34 117 aa8.41□□□□□ -1.06
NUP88-201ENST00000225696 COX17Q14061 63 aa8.41□□□□□ -1.06
NUP88-201ENST00000225696 S100A7L2Q5SY68 101 aa8.41□□□□□ -1.06
NUP88-201ENST00000225696 PKD1L1Q8TDX9 2849 aa8.4□□□□□ -1.06
NUP88-201ENST00000225696 Q6ZQT0 140 aa8.4□□□□□ -1.06
NUP88-201ENST00000225696 TMEM258P61165 79 aa8.39□□□□□ -1.07
NUP88-201ENST00000225696 RPS28P62857 69 aaKnown RBP8.39□□□□□ -1.07
NUP88-201ENST00000225696 DEFB135Q30KP9 77 aa8.38□□□□□ -1.07
NUP88-201ENST00000225696 RBM3P98179 157 aaKnown RBP8.38□□□□□ -1.07
NUP88-201ENST00000225696 UBL5Q9BZL1 73 aa8.38□□□□□ -1.07
NUP88-201ENST00000225696 CYSRT1A8MQ03 144 aa8.37□□□□□ -1.07
NUP88-201ENST00000225696 LAMTOR3Q9UHA4 124 aa8.37□□□□□ -1.07
NUP88-201ENST00000225696 CELA1Q9UNI1 258 aa8.37□□□□□ -1.07
NUP88-201ENST00000225696 HELZ2Q9BYK8 2649 aaKnown RBP8.37□□□□□ -1.07
NUP88-201ENST00000225696 UNC79Q9P2D8 2635 aa8.37□□□□□ -1.07
NUP88-201ENST00000225696 SMIM9A6NGZ8 99 aa8.37□□□□□ -1.07
NUP88-201ENST00000225696 Q6ZQY7 126 aa8.37□□□□□ -1.07
NUP88-201ENST00000225696 C20orf197Q8N268 126 aa8.37□□□□□ -1.07
NUP88-201ENST00000225696 FASNP49327 2511 aaKnown RBP8.36□□□□□ -1.07
NUP88-201ENST00000225696 SPAG11BQ08648 103 aa8.36□□□□□ -1.07
NUP88-201ENST00000225696 ATP5EP2Q5VTU8 51 aa8.36□□□□□ -1.07
NUP88-201ENST00000225696 IGLV6-57P01721 117 aa8.35□□□□□ -1.07
NUP88-201ENST00000225696 XAGE1AQ9HD64 81 aa8.35□□□□□ -1.07
NUP88-201ENST00000225696 OTOGQ6ZRI0 2925 aa8.35□□□□□ -1.07
NUP88-201ENST00000225696 LINC01547P58512 204 aaPredicted RBP8.35□□□□□ -1.07
NUP88-201ENST00000225696 SMR3AQ99954 134 aa8.35□□□□□ -1.07
NUP88-201ENST00000225696 TEP1Q99973 2627 aaKnown RBP8.34□□□□□ -1.07
NUP88-201ENST00000225696 TRAV10A0A0B4J240 114 aa8.34□□□□□ -1.07
NUP88-201ENST00000225696 ZNF561-AS1K7EIQ3 104 aa8.34□□□□□ -1.07
NUP88-201ENST00000225696 TRBV10-3A0A0K0K1G6 114 aa8.34□□□□□ -1.08
NUP88-201ENST00000225696 HTN3P15516 51 aa8.34□□□□□ -1.08
NUP88-201ENST00000225696 HAMPP81172 84 aa8.34□□□□□ -1.08
NUP88-201ENST00000225696 Q6ZVQ6 151 aa8.34□□□□□ -1.08
NUP88-201ENST00000225696 KLK12Q9UKR0 248 aa8.34□□□□□ -1.08
NUP88-201ENST00000225696 NOTCH2Q04721 2471 aa8.33□□□□□ -1.08
NUP88-201ENST00000225696 ATRQ13535 2644 aa8.33□□□□□ -1.08
NUP88-201ENST00000225696 LOC110117498A0A087WWA1 95 aa8.33□□□□□ -1.08
NUP88-201ENST00000225696 C4orf26Q17RF5 130 aa8.33□□□□□ -1.08
NUP88-201ENST00000225696 A0A0J9YWU9 116 aa8.32□□□□□ -1.08
NUP88-201ENST00000225696 LYRM9A8MSI8 78 aa8.32□□□□□ -1.08
NUP88-201ENST00000225696 IGHV4-30-4P0DP06 118 aa8.32□□□□□ -1.08
NUP88-201ENST00000225696 DAD1P61803 113 aa8.31□□□□□ -1.08
NUP88-201ENST00000225696 C6orf48Q9UBA6 75 aa8.31□□□□□ -1.08
NUP88-201ENST00000225696 Q5XG85 94 aa8.31□□□□□ -1.08
NUP88-201ENST00000225696 SCXQ7RTU7 201 aa8.31□□□□□ -1.08
NUP88-201ENST00000225696 C5orf47Q569G3 176 aa8.29□□□□□ -1.08
NUP88-201ENST00000225696 MUC7Q8TAX7 377 aa8.28□□□□□ -1.08
NUP88-201ENST00000225696 PRR34Q9NV39 138 aa8.28□□□□□ -1.08
NUP88-201ENST00000225696 SNURFQ9Y675 71 aa8.28□□□□□ -1.08
NUP88-201ENST00000225696 H7BZZ5 65 aa8.28□□□□□ -1.08
NUP88-201ENST00000225696 Q8NAQ8 132 aa8.28□□□□□ -1.08
NUP88-201ENST00000225696 ANK2Q01484 3957 aa8.27□□□□□ -1.09
NUP88-201ENST00000225696 HIGD2BQ4VC39 106 aa8.27□□□□□ -1.09
NUP88-201ENST00000225696 LELP1Q5T871 98 aa8.27□□□□□ -1.09
NUP88-201ENST00000225696 ZNF73O43830 326 aaPredicted RBP8.26□□□□□ -1.09
NUP88-201ENST00000225696 C9orf66Q5T8R8 295 aa8.26□□□□□ -1.09
NUP88-201ENST00000225696 HRCT1Q6UXD1 115 aa8.26□□□□□ -1.09
NUP88-201ENST00000225696 DIRC1Q969H9 104 aa8.26□□□□□ -1.09
NUP88-201ENST00000225696 HECTD1Q9ULT8 2610 aa8.25□□□□□ -1.09
NUP88-201ENST00000225696 TRAV7A0A075B6U4 112 aa8.25□□□□□ -1.09
NUP88-201ENST00000225696 RMI2Q96E14 147 aa8.25□□□□□ -1.09
NUP88-201ENST00000225696 TRBV7-4A0A0J9YYF1 115 aa8.25□□□□□ -1.09
NUP88-201ENST00000225696 NSD1Q96L73 2696 aaPredicted RBP8.24□□□□□ -1.09
NUP88-201ENST00000225696 GVQW2A0A096LPI5 108 aaPredicted RBP8.24□□□□□ -1.09
NUP88-201ENST00000225696 FAM236DA0A1B0GTK5 79 aa8.24□□□□□ -1.09
NUP88-201ENST00000225696 NDUFC2-KCTD14E9PQ53 114 aa8.24□□□□□ -1.09
NUP88-201ENST00000225696 FAM236CP0DP71 79 aa8.24□□□□□ -1.09
NUP88-201ENST00000225696 TM2D3Q9BRN9 247 aa8.24□□□□□ -1.09
NUP88-201ENST00000225696 ELOF1P60002 83 aaKnown RBP8.23□□□□□ -1.09
NUP88-201ENST00000225696 Q8N9L7 120 aa8.23□□□□□ -1.09
NUP88-201ENST00000225696 TENM3Q9P273 2699 aa8.23□□□□□ -1.09
NUP88-201ENST00000225696 VPREB1P12018 145 aa8.22□□□□□ -1.09
NUP88-201ENST00000225696 COX7BP24311 80 aa8.22□□□□□ -1.09
NUP88-201ENST00000225696 CXCL6P80162 114 aa8.22□□□□□ -1.09
NUP88-201ENST00000225696 WFDC10BQ8IUB3 73 aa8.21□□□□□ -1.09
NUP88-201ENST00000225696 SPART-AS1P0CW21 52 aa8.21□□□□□ -1.1
NUP88-201ENST00000225696 KLKP1Q107X0 134 aa8.21□□□□□ -1.1
NUP88-201ENST00000225696 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP8.21□□□□□ -1.1
NUP88-201ENST00000225696 APOC4P55056 127 aa8.2□□□□□ -1.1
NUP88-201ENST00000225696 Q6ZRU5 148 aa8.2□□□□□ -1.1
NUP88-201ENST00000225696 PDE6GP18545 87 aa8.2□□□□□ -1.1
NUP88-201ENST00000225696 CAMK2N2Q96S95 79 aa8.2□□□□□ -1.1
NUP88-201ENST00000225696 F8WEM9 126 aa8.19□□□□□ -1.1
NUP88-201ENST00000225696 MIFP14174 115 aa8.19□□□□□ -1.1
NUP88-201ENST00000225696 KRTAP26-1Q6PEX3 210 aa8.19□□□□□ -1.1
NUP88-201ENST00000225696 EPM2AB3EWF7 344 aa8.18□□□□□ -1.1
NUP88-201ENST00000225696 BCE1O60756 84 aa8.18□□□□□ -1.1
NUP88-201ENST00000225696 LINC00528Q8N1L1 170 aa8.18□□□□□ -1.1
NUP88-201ENST00000225696 TRBV7-6A0A0J9YX20 115 aa8.17□□□□□ -1.1
NUP88-201ENST00000225696 C15orf56Q8N910 161 aa8.17□□□□□ -1.1
NUP88-201ENST00000225696 Q6ZRP5 223 aa8.16□□□□□ -1.1
NUP88-201ENST00000225696 M0R378 163 aa8.15□□□□□ -1.11
NUP88-201ENST00000225696 BPY2O14599 106 aa8.15□□□□□ -1.11
NUP88-201ENST00000225696 SERP1Q9Y6X1 66 aa8.15□□□□□ -1.11
NUP88-201ENST00000225696 RETNQ9HD89 108 aa8.14□□□□□ -1.11
NUP88-201ENST00000225696 C3orf84H3BNL1 204 aa8.14□□□□□ -1.11
NUP88-201ENST00000225696 EGFEM1PQ0D2K5 195 aa8.14□□□□□ -1.11
NUP88-201ENST00000225696 NREPQ16612 68 aa8.14□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 121.7 ms