RNA–Protein interactions for RNA: ENST00000215793.12

SF3A1-201, Transcript of splicing factor 3a subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3A1, Length 5,143 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-201ENST00000215793 SPATA3Q8NHX4 192 aa9.4□□□□□ -0.9
SF3A1-201ENST00000215793 X6R8D5 127 aa9.4□□□□□ -0.9
SF3A1-201ENST00000215793 RETNLBQ9BQ08 111 aa9.4□□□□□ -0.91
SF3A1-201ENST00000215793 PSPHP1O15172 72 aa9.39□□□□□ -0.91
SF3A1-201ENST00000215793 POLQO75417 2590 aa9.39□□□□□ -0.91
SF3A1-201ENST00000215793 C1orf64Q8NEQ6 169 aa9.39□□□□□ -0.91
SF3A1-201ENST00000215793 SPINK1P00995 79 aa9.39□□□□□ -0.91
SF3A1-201ENST00000215793 LINC00167Q96N53 147 aa9.38□□□□□ -0.91
SF3A1-201ENST00000215793 BCE1O60756 84 aa9.38□□□□□ -0.91
SF3A1-201ENST00000215793 C6orf48Q9UBA6 75 aa9.38□□□□□ -0.91
SF3A1-201ENST00000215793 SRCAPQ6ZRS2 3230 aa9.36□□□□□ -0.91
SF3A1-201ENST00000215793 TP53AIP1Q9HCN2 124 aa9.36□□□□□ -0.91
SF3A1-201ENST00000215793 ACANP16112 2415 aa9.35□□□□□ -0.91
SF3A1-201ENST00000215793 MDFIQ99750 246 aa9.35□□□□□ -0.91
SF3A1-201ENST00000215793 SMIM29Q86T20 159 aa9.34□□□□□ -0.91
SF3A1-201ENST00000215793 CRYGAP11844 174 aa9.33□□□□□ -0.92
SF3A1-201ENST00000215793 ELOF1P60002 83 aaKnown RBP9.33□□□□□ -0.92
SF3A1-201ENST00000215793 SMCPP49901 116 aaPredicted RBP9.33□□□□□ -0.92
SF3A1-201ENST00000215793 IGKV2D-30A0A075B6S6 120 aa9.31□□□□□ -0.92
SF3A1-201ENST00000215793 IGKV2-30P06310 120 aa9.31□□□□□ -0.92
SF3A1-201ENST00000215793 PRO0461Q9UI25 63 aa9.3□□□□□ -0.92
SF3A1-201ENST00000215793 CENPFP49454 3210 aa9.3□□□□□ -0.92
SF3A1-201ENST00000215793 FAM218AQ96MZ4 157 aa9.3□□□□□ -0.92
SF3A1-201ENST00000215793 Q8NBF4 154 aa9.3□□□□□ -0.92
SF3A1-201ENST00000215793 MOBPQ13875 183 aa9.29□□□□□ -0.92
SF3A1-201ENST00000215793 Q9UF83 564 aa9.29□□□□□ -0.92
SF3A1-201ENST00000215793 Q6ZRX8 168 aa9.29□□□□□ -0.92
SF3A1-201ENST00000215793 ANKRD17O75179 2603 aaKnown RBP9.29□□□□□ -0.92
SF3A1-201ENST00000215793 LOC110117498A0A087WWA1 95 aa9.28□□□□□ -0.92
SF3A1-201ENST00000215793 KLK9Q2XQG4 91 aa9.28□□□□□ -0.92
SF3A1-201ENST00000215793 Q6ZQT0 140 aa9.27□□□□□ -0.93
SF3A1-201ENST00000215793 H3BPC8 53 aa9.27□□□□□ -0.93
SF3A1-201ENST00000215793 SPACA4Q8TDM5 124 aa9.26□□□□□ -0.93
SF3A1-201ENST00000215793 ACYP2P14621 99 aa9.25□□□□□ -0.93
SF3A1-201ENST00000215793 LINC00476Q8WZB0 136 aa9.25□□□□□ -0.93
SF3A1-201ENST00000215793 Q8NAQ8 132 aa9.24□□□□□ -0.93
SF3A1-201ENST00000215793 C7orf65Q6ZTY9 151 aa9.24□□□□□ -0.93
SF3A1-201ENST00000215793 GVQW2A0A096LPI5 108 aaPredicted RBP9.23□□□□□ -0.93
SF3A1-201ENST00000215793 A0A1B0GU69 56 aa9.23□□□□□ -0.93
SF3A1-201ENST00000215793 C16orf90A8MZG2 172 aa9.23□□□□□ -0.93
SF3A1-201ENST00000215793 EPG5Q9HCE0 2579 aa9.23□□□□□ -0.93
SF3A1-201ENST00000215793 PTPRBP23467 1997 aa9.22□□□□□ -0.93
SF3A1-201ENST00000215793 NBDYA0A0U1RRE5 68 aa9.21□□□□□ -0.93
SF3A1-201ENST00000215793 PHF5AQ7RTV0 110 aaKnown RBP9.21□□□□□ -0.93
SF3A1-201ENST00000215793 RPS28P62857 69 aaKnown RBP9.21□□□□□ -0.94
SF3A1-201ENST00000215793 EPM2AB3EWF7 344 aa9.2□□□□□ -0.94
SF3A1-201ENST00000215793 KRTAP24-1Q3LI83 254 aa9.2□□□□□ -0.94
SF3A1-201ENST00000215793 PRO0628Q9UI54 55 aa9.2□□□□□ -0.94
SF3A1-201ENST00000215793 TRAV22A0A0B4J277 110 aa9.2□□□□□ -0.94
SF3A1-201ENST00000215793 Q6ZRP5 223 aa9.2□□□□□ -0.94
SF3A1-201ENST00000215793 LINC00588Q9Y4M8 146 aa9.19□□□□□ -0.94
SF3A1-201ENST00000215793 RTL8CO15255 209 aa9.18□□□□□ -0.94
SF3A1-201ENST00000215793 LITAFQ99732 161 aa9.17□□□□□ -0.94
SF3A1-201ENST00000215793 TRBV7-4A0A0J9YYF1 115 aa9.17□□□□□ -0.94
SF3A1-201ENST00000215793 ST20-AS1Q8NBB2 130 aa9.16□□□□□ -0.94
SF3A1-201ENST00000215793 EP400Q96L91 3159 aa9.16□□□□□ -0.94
SF3A1-201ENST00000215793 LINC00313P59037 77 aa9.16□□□□□ -0.94
SF3A1-201ENST00000215793 DNAH10OSP0CZ25 163 aa9.16□□□□□ -0.94
SF3A1-201ENST00000215793 IGLV6-57P01721 117 aa9.15□□□□□ -0.94
SF3A1-201ENST00000215793 VPREB1P12018 145 aa9.15□□□□□ -0.94
SF3A1-201ENST00000215793 COL4A2P08572 1712 aa9.14□□□□□ -0.95
SF3A1-201ENST00000215793 FLNBO75369 2602 aaKnown RBP9.14□□□□□ -0.95
SF3A1-201ENST00000215793 TYMSOSQ8TAI1 123 aa9.14□□□□□ -0.95
SF3A1-201ENST00000215793 TM2D3Q9BRN9 247 aa9.13□□□□□ -0.95
SF3A1-201ENST00000215793 FAM229AH3BQW9 127 aa9.13□□□□□ -0.95
SF3A1-201ENST00000215793 SPAG11AQ6PDA7 123 aa9.13□□□□□ -0.95
SF3A1-201ENST00000215793 COL27A1Q8IZC6 1860 aaPredicted RBP9.11□□□□□ -0.95
SF3A1-201ENST00000215793 USP24Q9UPU5 2620 aa9.11□□□□□ -0.95
SF3A1-201ENST00000215793 LOC101927531A0A1B0GV80 90 aa9.1□□□□□ -0.95
SF3A1-201ENST00000215793 CHTF8P0CG12 524 aa9.09□□□□□ -0.95
SF3A1-201ENST00000215793 C8orf87E5RJ46 101 aa9.09□□□□□ -0.95
SF3A1-201ENST00000215793 A8MWP4 228 aa9.09□□□□□ -0.96
SF3A1-201ENST00000215793 KCNQ1DNQ9H478 68 aa9.08□□□□□ -0.96
SF3A1-201ENST00000215793 RPL37AP61513 92 aaKnown RBP9.08□□□□□ -0.96
SF3A1-201ENST00000215793 CSNK1G2-AS1Q8NCQ2 148 aa9.08□□□□□ -0.96
SF3A1-201ENST00000215793 ERC2-IT1O76042 136 aa9.07□□□□□ -0.96
SF3A1-201ENST00000215793 MGAM2Q2M2H8 2515 aa9.07□□□□□ -0.96
SF3A1-201ENST00000215793 ATP11AUNQ6ZP68 121 aa9.06□□□□□ -0.96
SF3A1-201ENST00000215793 IGLV1-50A0A075B6I6 118 aa9.06□□□□□ -0.96
SF3A1-201ENST00000215793 LINC00528Q8N1L1 170 aa9.05□□□□□ -0.96
SF3A1-201ENST00000215793 C4orf26Q17RF5 130 aa9.05□□□□□ -0.96
SF3A1-201ENST00000215793 WWC2-AS2Q96NR7 200 aa9.04□□□□□ -0.96
SF3A1-201ENST00000215793 MRPL34Q9BQ48 92 aaKnown RBP9.04□□□□□ -0.96
SF3A1-201ENST00000215793 PRR34Q9NV39 138 aa9.04□□□□□ -0.96
SF3A1-201ENST00000215793 SERTAD4-AS1Q5TG53 156 aa9.03□□□□□ -0.96
SF3A1-201ENST00000215793 FAM168BA1KXE4 195 aa9.03□□□□□ -0.96
SF3A1-201ENST00000215793 K7EQZ3 153 aa9.03□□□□□ -0.96
SF3A1-201ENST00000215793 Q96NJ1 140 aa9.02□□□□□ -0.96
SF3A1-201ENST00000215793 PLA2G1BP04054 148 aaKnown RBP8.99□□□□□ -0.97
SF3A1-201ENST00000215793 EIF4EBP3O60516 100 aaPredicted RBP8.97□□□□□ -0.97
SF3A1-201ENST00000215793 IGFL1Q6UW32 110 aa8.97□□□□□ -0.97
SF3A1-201ENST00000215793 SSBP3-AS1Q7Z2R9 100 aa8.97□□□□□ -0.97
SF3A1-201ENST00000215793 C19orf73Q9NVV2 129 aa8.96□□□□□ -0.97
SF3A1-201ENST00000215793 HECTD1Q9ULT8 2610 aa8.96□□□□□ -0.98
SF3A1-201ENST00000215793 PRR15Q8IV56 129 aa8.96□□□□□ -0.98
SF3A1-201ENST00000215793 C15orf56Q8N910 161 aa8.96□□□□□ -0.98
SF3A1-201ENST00000215793 LINC00612Q8N6U2 182 aa8.95□□□□□ -0.98
SF3A1-201ENST00000215793 IGLV8-61A0A075B6I0 122 aa8.95□□□□□ -0.98
SF3A1-201ENST00000215793 CYP4F30PQ9H0H9 118 aa8.95□□□□□ -0.98
SF3A1-201ENST00000215793 COA5Q86WW8 74 aa8.94□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 76.7 ms