RNA–Protein interactions for RNA: ENST00000641603.1

SCN1A-220, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

BASIC

Gene SCN1A, Length 12,506 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-220ENST00000641603 C9orf116Q5BN46 136 aaPredicted RBP3.32□□□□□ -1.88
SCN1A-220ENST00000641603 Q6ZRU5 148 aa3.32□□□□□ -1.88
SCN1A-220ENST00000641603 TRAV22A0A0B4J277 110 aa3.32□□□□□ -1.88
SCN1A-220ENST00000641603 PRB1P04280 392 aa3.31□□□□□ -1.88
SCN1A-220ENST00000641603 CDC42SE1Q9NRR8 79 aa3.31□□□□□ -1.88
SCN1A-220ENST00000641603 C4orf48Q5BLP8 95 aa3.31□□□□□ -1.88
SCN1A-220ENST00000641603 SMCR5Q8TEV8 140 aa3.31□□□□□ -1.88
SCN1A-220ENST00000641603 LRRK2Q5S007 2527 aa3.31□□□□□ -1.88
SCN1A-220ENST00000641603 F8W735 103 aaPredicted RBP3.31□□□□□ -1.88
SCN1A-220ENST00000641603 Q8N2B8 174 aa3.31□□□□□ -1.88
SCN1A-220ENST00000641603 OBSCN-AS1Q96MR7 158 aa3.31□□□□□ -1.88
SCN1A-220ENST00000641603 CSPG4Q6UVK1 2322 aa3.31□□□□□ -1.88
SCN1A-220ENST00000641603 GVQW2A0A096LPI5 108 aaPredicted RBP3.31□□□□□ -1.88
SCN1A-220ENST00000641603 CYSRT1A8MQ03 144 aa3.31□□□□□ -1.88
SCN1A-220ENST00000641603 Q8NBF4 154 aa3.31□□□□□ -1.88
SCN1A-220ENST00000641603 HIVEP2P31629 2446 aa3.31□□□□□ -1.88
SCN1A-220ENST00000641603 COL4A2P08572 1712 aa3.31□□□□□ -1.88
SCN1A-220ENST00000641603 OTOGLQ3ZCN5 2332 aa3.31□□□□□ -1.88
SCN1A-220ENST00000641603 Q6ZTC4 211 aa3.31□□□□□ -1.88
SCN1A-220ENST00000641603 ZNF702PQ9H963 129 aa3.31□□□□□ -1.88
SCN1A-220ENST00000641603 TRBV7-4A0A0J9YYF1 115 aa3.31□□□□□ -1.88
SCN1A-220ENST00000641603 PLA2G5P39877 138 aa3.31□□□□□ -1.88
SCN1A-220ENST00000641603 ASB16-AS1Q495Z4 193 aa3.31□□□□□ -1.88
SCN1A-220ENST00000641603 EDN2P20800 178 aa3.3□□□□□ -1.88
SCN1A-220ENST00000641603 NCOR2Q9Y618 2525 aa3.3□□□□□ -1.88
SCN1A-220ENST00000641603 PRR4Q16378 134 aa3.3□□□□□ -1.88
SCN1A-220ENST00000641603 ANKHD1Q8IWZ3 2542 aaKnown RBP3.3□□□□□ -1.88
SCN1A-220ENST00000641603 SMIM29Q86T20 159 aa3.3□□□□□ -1.88
SCN1A-220ENST00000641603 ABCA2Q9BZC7 2435 aa3.3□□□□□ -1.88
SCN1A-220ENST00000641603 IGHV4-61A0A0C4DH41 118 aa3.3□□□□□ -1.88
SCN1A-220ENST00000641603 COX6A2Q02221 97 aa3.3□□□□□ -1.88
SCN1A-220ENST00000641603 C11orf71Q6IPW1 123 aa3.3□□□□□ -1.88
SCN1A-220ENST00000641603 XAGE1AQ9HD64 81 aa3.3□□□□□ -1.88
SCN1A-220ENST00000641603 CACNA1AO00555 2505 aa3.29□□□□□ -1.88
SCN1A-220ENST00000641603 Q9BRP9 147 aa3.29□□□□□ -1.88
SCN1A-220ENST00000641603 A0A1B0GU69 56 aa3.29□□□□□ -1.88
SCN1A-220ENST00000641603 FAM218AQ96MZ4 157 aa3.29□□□□□ -1.88
SCN1A-220ENST00000641603 PTPN13Q12923 2485 aa3.29□□□□□ -1.88
SCN1A-220ENST00000641603 A0A096LPF7 62 aa3.29□□□□□ -1.88
SCN1A-220ENST00000641603 A0A0J9YWU9 116 aa3.29□□□□□ -1.88
SCN1A-220ENST00000641603 IGHV4-30-4P0DP06 118 aa3.29□□□□□ -1.88
SCN1A-220ENST00000641603 REG3GQ6UW15 175 aa3.29□□□□□ -1.88
SCN1A-220ENST00000641603 LYPD5Q6UWN5 251 aa3.29□□□□□ -1.88
SCN1A-220ENST00000641603 RNF223E7ERA6 249 aa3.28□□□□□ -1.88
SCN1A-220ENST00000641603 Q6YL49 198 aa3.28□□□□□ -1.88
SCN1A-220ENST00000641603 AGRNO00468 2067 aa3.28□□□□□ -1.88
SCN1A-220ENST00000641603 LRCOL1A6NCL2 159 aa3.28□□□□□ -1.88
SCN1A-220ENST00000641603 TM2D3Q9BRN9 247 aa3.28□□□□□ -1.88
SCN1A-220ENST00000641603 LOC100131303A0A0U1RQF7 123 aa3.28□□□□□ -1.88
SCN1A-220ENST00000641603 NOTCH4Q99466 2003 aa3.27□□□□□ -1.89
SCN1A-220ENST00000641603 UQCR11O14957 56 aa3.27□□□□□ -1.89
SCN1A-220ENST00000641603 DEFB1P60022 68 aa3.27□□□□□ -1.89
SCN1A-220ENST00000641603 IGLV6-57P01721 117 aa3.27□□□□□ -1.89
SCN1A-220ENST00000641603 Q96MF0 132 aa3.27□□□□□ -1.89
SCN1A-220ENST00000641603 Q5XG85 94 aa3.27□□□□□ -1.89
SCN1A-220ENST00000641603 TRAV10A0A0B4J240 114 aa3.27□□□□□ -1.89
SCN1A-220ENST00000641603 AVPP01185 164 aa3.27□□□□□ -1.89
SCN1A-220ENST00000641603 PROK1P58294 105 aa3.27□□□□□ -1.89
SCN1A-220ENST00000641603 DEFB136Q30KP8 78 aa3.27□□□□□ -1.89
SCN1A-220ENST00000641603 UNQ6190/PRO20217Q6UXQ8 127 aa3.27□□□□□ -1.89
SCN1A-220ENST00000641603 OXLD1Q5BKU9 147 aa3.26□□□□□ -1.89
SCN1A-220ENST00000641603 MUC4Q99102 2169 aa3.26□□□□□ -1.89
SCN1A-220ENST00000641603 IGKV2-28A0A075B6P5 120 aa3.26□□□□□ -1.89
SCN1A-220ENST00000641603 A8MUN3 132 aa3.26□□□□□ -1.89
SCN1A-220ENST00000641603 IGKV2D-28P01615 120 aa3.26□□□□□ -1.89
SCN1A-220ENST00000641603 ARHGAP32A7KAX9 2087 aa3.26□□□□□ -1.89
SCN1A-220ENST00000641603 H3BNG1 76 aa3.26□□□□□ -1.89
SCN1A-220ENST00000641603 Q75L30 129 aa3.26□□□□□ -1.89
SCN1A-220ENST00000641603 COA5Q86WW8 74 aa3.26□□□□□ -1.89
SCN1A-220ENST00000641603 RAI1Q7Z5J4 1906 aaPredicted RBP3.26□□□□□ -1.89
SCN1A-220ENST00000641603 A0A087WSZ3 146 aa3.26□□□□□ -1.89
SCN1A-220ENST00000641603 PRRC2AP48634 2157 aaKnown RBP3.26□□□□□ -1.89
SCN1A-220ENST00000641603 C6orf48Q9UBA6 75 aa3.25□□□□□ -1.89
SCN1A-220ENST00000641603 RPL37AP61513 92 aaKnown RBP3.25□□□□□ -1.89
SCN1A-220ENST00000641603 A8MTW9 85 aa3.25□□□□□ -1.89
SCN1A-220ENST00000641603 IGHV4-30-2A0A087WSY4 118 aa3.25□□□□□ -1.89
SCN1A-220ENST00000641603 ADORA2A-AS1P86434 159 aa3.25□□□□□ -1.89
SCN1A-220ENST00000641603 Q6ZRX8 168 aa3.25□□□□□ -1.89
SCN1A-220ENST00000641603 LRP4O75096 1905 aa3.25□□□□□ -1.89
SCN1A-220ENST00000641603 DEFB135Q30KP9 77 aa3.25□□□□□ -1.89
SCN1A-220ENST00000641603 ADAMTS20P59510 1910 aa3.25□□□□□ -1.89
SCN1A-220ENST00000641603 GPR179Q6PRD1 2367 aa3.24□□□□□ -1.89
SCN1A-220ENST00000641603 DEFB113Q30KQ7 82 aa3.24□□□□□ -1.89
SCN1A-220ENST00000641603 J3QKU1 62 aa3.24□□□□□ -1.89
SCN1A-220ENST00000641603 RBM12B-AS1Q9P1G2 102 aa3.24□□□□□ -1.89
SCN1A-220ENST00000641603 DSCAML1Q8TD84 2053 aa3.24□□□□□ -1.89
SCN1A-220ENST00000641603 EXPH5Q8NEV8 1989 aa3.24□□□□□ -1.89
SCN1A-220ENST00000641603 IGLV2-33A0A075B6J2 118 aaPredicted RBP3.24□□□□□ -1.89
SCN1A-220ENST00000641603 A0A087X002 238 aa3.24□□□□□ -1.89
SCN1A-220ENST00000641603 ODF3L2Q3SX64 289 aa3.24□□□□□ -1.89
SCN1A-220ENST00000641603 TTC28Q96AY4 2481 aa3.23□□□□□ -1.89
SCN1A-220ENST00000641603 C7orf33Q8WU49 177 aa3.23□□□□□ -1.89
SCN1A-220ENST00000641603 DEFB131BA0A096LNP1 70 aa3.23□□□□□ -1.89
SCN1A-220ENST00000641603 A8MWP4 228 aa3.23□□□□□ -1.89
SCN1A-220ENST00000641603 BBC3Q96PG8 261 aaPredicted RBP3.23□□□□□ -1.89
SCN1A-220ENST00000641603 TECTAO75443 2155 aa3.23□□□□□ -1.89
SCN1A-220ENST00000641603 IGLV4-60A0A075B6I1 120 aa3.23□□□□□ -1.89
SCN1A-220ENST00000641603 DNAJC9-AS1A6NH13 148 aa3.23□□□□□ -1.89
SCN1A-220ENST00000641603 FAM229AH3BQW9 127 aa3.23□□□□□ -1.89
SCN1A-220ENST00000641603 Q9UF83 564 aa3.23□□□□□ -1.89
Retrieved 100 of 20,778 RNA–protein pairs in 42 ms