RNA–Protein interactions for RNA: ENST00000641575.1

SCN1A-219, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 BASIC

Gene SCN1A, Length 12,874 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-219ENST00000641575 Q6ZQY7 126 aa2.09□□□□□ -2.07
SCN1A-219ENST00000641575 MDFICQ9P1T7 246 aa2.09□□□□□ -2.07
SCN1A-219ENST00000641575 LINC00269Q8N2A0 174 aa2.09□□□□□ -2.07
SCN1A-219ENST00000641575 Q8N7P7 452 aa2.09□□□□□ -2.07
SCN1A-219ENST00000641575 NPBQ8NG41 125 aa2.09□□□□□ -2.07
SCN1A-219ENST00000641575 ZNF702PQ9H963 129 aa2.09□□□□□ -2.07
SCN1A-219ENST00000641575 UTRNP46939 3433 aa2.09□□□□□ -2.07
SCN1A-219ENST00000641575 PKD1L1Q8TDX9 2849 aa2.09□□□□□ -2.07
SCN1A-219ENST00000641575 LYNX1P0DP58 116 aa2.09□□□□□ -2.07
SCN1A-219ENST00000641575 PLA2G2EQ9NZK7 142 aa2.09□□□□□ -2.07
SCN1A-219ENST00000641575 MRPS12O15235 138 aaKnown RBP2.09□□□□□ -2.07
SCN1A-219ENST00000641575 SPRY4Q9C004 299 aa2.09□□□□□ -2.07
SCN1A-219ENST00000641575 PLAC8L1A1L4L8 177 aa2.09□□□□□ -2.07
SCN1A-219ENST00000641575 LINC00575Q6W349 94 aa2.09□□□□□ -2.07
SCN1A-219ENST00000641575 TRBV7-6A0A0J9YX20 115 aa2.09□□□□□ -2.08
SCN1A-219ENST00000641575 KPRPQ5T749 579 aaPredicted RBP2.09□□□□□ -2.08
SCN1A-219ENST00000641575 A0A0A0MQY5 61 aa2.09□□□□□ -2.08
SCN1A-219ENST00000641575 M0R2T5 61 aa2.09□□□□□ -2.08
SCN1A-219ENST00000641575 M0R378 163 aa2.09□□□□□ -2.08
SCN1A-219ENST00000641575 HRES1P13985 223 aa2.09□□□□□ -2.08
SCN1A-219ENST00000641575 XGP55808 180 aa2.09□□□□□ -2.08
SCN1A-219ENST00000641575 IBA57-AS1B1ANH7 110 aa2.09□□□□□ -2.08
SCN1A-219ENST00000641575 TYMSOSQ8TAI1 123 aa2.09□□□□□ -2.08
SCN1A-219ENST00000641575 COL4A2P08572 1712 aa2.09□□□□□ -2.08
SCN1A-219ENST00000641575 LINC00114Q6XXX2 140 aa2.08□□□□□ -2.08
SCN1A-219ENST00000641575 IGLV9-49A0A0B4J1Y8 123 aa2.08□□□□□ -2.08
SCN1A-219ENST00000641575 LINC00483Q53H64 154 aa2.08□□□□□ -2.08
SCN1A-219ENST00000641575 C2orf48Q96LS8 159 aa2.08□□□□□ -2.08
SCN1A-219ENST00000641575 C8orf17Q9NRJ1 99 aa2.08□□□□□ -2.08
SCN1A-219ENST00000641575 LTBP2Q14767 1821 aa2.08□□□□□ -2.08
SCN1A-219ENST00000641575 Q9BRP9 147 aa2.08□□□□□ -2.08
SCN1A-219ENST00000641575 TRBV7-7A0A0K0K1E9 115 aa2.08□□□□□ -2.08
SCN1A-219ENST00000641575 BEAN1Q3B7T3 259 aa2.08□□□□□ -2.08
SCN1A-219ENST00000641575 TP73-AS1Q9UF72 201 aa2.08□□□□□ -2.08
SCN1A-219ENST00000641575 FOXL2NBQ6ZUU3 175 aa2.08□□□□□ -2.08
SCN1A-219ENST00000641575 ZFAND3Q9H8U3 227 aa2.08□□□□□ -2.08
SCN1A-219ENST00000641575 ZFAND2AQ8N6M9 145 aa2.08□□□□□ -2.08
SCN1A-219ENST00000641575 MSRB1Q9NZV6 116 aa2.08□□□□□ -2.08
SCN1A-219ENST00000641575 Q6ZRP5 223 aa2.08□□□□□ -2.08
SCN1A-219ENST00000641575 SMIM1B2RUZ4 78 aa2.08□□□□□ -2.08
SCN1A-219ENST00000641575 C4orf51C9J302 202 aa2.08□□□□□ -2.08
SCN1A-219ENST00000641575 HRNRQ86YZ3 2850 aaPredicted RBP2.08□□□□□ -2.08
SCN1A-219ENST00000641575 EP400Q96L91 3159 aa2.08□□□□□ -2.08
SCN1A-219ENST00000641575 TSHBP01222 138 aa2.07□□□□□ -2.08
SCN1A-219ENST00000641575 SLPIP03973 132 aa2.07□□□□□ -2.08
SCN1A-219ENST00000641575 CCKP06307 115 aa2.07□□□□□ -2.08
SCN1A-219ENST00000641575 ESRGQ1W209 222 aa2.07□□□□□ -2.08
SCN1A-219ENST00000641575 MIR7-3HGQ8N6C7 128 aa2.07□□□□□ -2.08
SCN1A-219ENST00000641575 PSMG3-AS1Q96PY0 264 aa2.07□□□□□ -2.08
SCN1A-219ENST00000641575 RPL39P62891 51 aaKnown RBP2.07□□□□□ -2.08
SCN1A-219ENST00000641575 C4orf26Q17RF5 130 aa2.07□□□□□ -2.08
SCN1A-219ENST00000641575 A0A0J9YXV3 536 aa2.07□□□□□ -2.08
SCN1A-219ENST00000641575 Q8N6K4 173 aa2.07□□□□□ -2.08
SCN1A-219ENST00000641575 MAP6D1Q9H9H5 199 aa2.07□□□□□ -2.08
SCN1A-219ENST00000641575 TRBV6-8A0A0A6YYG3 113 aa2.07□□□□□ -2.08
SCN1A-219ENST00000641575 GNRH2O43555 120 aa2.07□□□□□ -2.08
SCN1A-219ENST00000641575 ARTNQ5T4W7 220 aa2.07□□□□□ -2.08
SCN1A-219ENST00000641575 XAGE1AQ9HD64 81 aa2.07□□□□□ -2.08
SCN1A-219ENST00000641575 H3BNG1 76 aa2.07□□□□□ -2.08
SCN1A-219ENST00000641575 IGLV1-44P01699 117 aa2.07□□□□□ -2.08
SCN1A-219ENST00000641575 C1orf137Q5JT78 98 aa2.07□□□□□ -2.08
SCN1A-219ENST00000641575 PPDPFQ9H3Y8 114 aa2.07□□□□□ -2.08
SCN1A-219ENST00000641575 IGKV1D-43A0A0B4J1Z2 117 aa2.07□□□□□ -2.08
SCN1A-219ENST00000641575 H3BPC8 53 aa2.07□□□□□ -2.08
SCN1A-219ENST00000641575 PRM2P04554 102 aa2.07□□□□□ -2.08
SCN1A-219ENST00000641575 Q6ZSN1 163 aa2.07□□□□□ -2.08
SCN1A-219ENST00000641575 IGKV2-28A0A075B6P5 120 aa2.07□□□□□ -2.08
SCN1A-219ENST00000641575 IGKV2D-28P01615 120 aa2.07□□□□□ -2.08
SCN1A-219ENST00000641575 NEXN-AS1Q8NBZ9 246 aa2.07□□□□□ -2.08
SCN1A-219ENST00000641575 EPM2AB3EWF7 344 aa2.07□□□□□ -2.08
SCN1A-219ENST00000641575 TRBV6-5A0A0K0K1A5 114 aa2.06□□□□□ -2.08
SCN1A-219ENST00000641575 LINC00313P59037 77 aa2.06□□□□□ -2.08
SCN1A-219ENST00000641575 A0A096LNI7 61 aa2.06□□□□□ -2.08
SCN1A-219ENST00000641575 RPS28P62857 69 aaKnown RBP2.06□□□□□ -2.08
SCN1A-219ENST00000641575 CRIPTQ9P021 101 aa2.06□□□□□ -2.08
SCN1A-219ENST00000641575 C7orf65Q6ZTY9 151 aa2.06□□□□□ -2.08
SCN1A-219ENST00000641575 SPACA4Q8TDM5 124 aa2.06□□□□□ -2.08
SCN1A-219ENST00000641575 PINLYPA6NC86 204 aa2.06□□□□□ -2.08
SCN1A-219ENST00000641575 CD164Q04900 197 aa2.06□□□□□ -2.08
SCN1A-219ENST00000641575 LYPD2Q6UXB3 125 aa2.06□□□□□ -2.08
SCN1A-219ENST00000641575 POM121L12Q8N7R1 296 aa2.06□□□□□ -2.08
SCN1A-219ENST00000641575 LINC00208Q96KT6 92 aa2.06□□□□□ -2.08
SCN1A-219ENST00000641575 NBEAQ8NFP9 2946 aa2.06□□□□□ -2.08
SCN1A-219ENST00000641575 CEMP1Q6PRD7 247 aaPredicted RBP2.06□□□□□ -2.08
SCN1A-219ENST00000641575 CENPFP49454 3210 aa2.05□□□□□ -2.08
SCN1A-219ENST00000641575 A0A0J9YX75 114 aa2.05□□□□□ -2.08
SCN1A-219ENST00000641575 CHCHD10Q8WYQ3 142 aaPredicted RBP2.05□□□□□ -2.08
SCN1A-219ENST00000641575 H0Y9P7 68 aa2.05□□□□□ -2.08
SCN1A-219ENST00000641575 TTTY13Q9BZ97 58 aa2.05□□□□□ -2.08
SCN1A-219ENST00000641575 G3V318 75 aa2.05□□□□□ -2.08
SCN1A-219ENST00000641575 IGLV2-8P01709 118 aa2.05□□□□□ -2.08
SCN1A-219ENST00000641575 LINC01556Q5JQF7 62 aa2.05□□□□□ -2.08
SCN1A-219ENST00000641575 C17orf82Q86X59 251 aaPredicted RBP2.05□□□□□ -2.08
SCN1A-219ENST00000641575 ZNF503-AS2A6NEH8 195 aa2.05□□□□□ -2.08
SCN1A-219ENST00000641575 ASH1LQ9NR48 2969 aaKnown RBP2.05□□□□□ -2.08
SCN1A-219ENST00000641575 IGLV11-55A0A075B6I3 123 aa2.05□□□□□ -2.08
SCN1A-219ENST00000641575 IGLV5-45A0A087WSX0 123 aa2.05□□□□□ -2.08
SCN1A-219ENST00000641575 C16orf95Q9H693 158 aa2.05□□□□□ -2.08
SCN1A-219ENST00000641575 C10orf142B7Z368 130 aa2.05□□□□□ -2.08
SCN1A-219ENST00000641575 MSMPQ1L6U9 139 aa2.05□□□□□ -2.08
Retrieved 100 of 20,778 RNA–protein pairs in 45.2 ms