RNA–Protein interactions for RNA: ENST00000640036.1

SCN1A-218, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN1A, Length 8,131 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-218ENST00000640036 hDV103S1A0JD37 113 aa3.64□□□□□ -1.83
SCN1A-218ENST00000640036 C10orf142B7Z368 130 aa3.64□□□□□ -1.83
SCN1A-218ENST00000640036 EIF4EBP1Q13541 118 aaPredicted RBP3.64□□□□□ -1.83
SCN1A-218ENST00000640036 CDIP1Q9H305 208 aa3.64□□□□□ -1.83
SCN1A-218ENST00000640036 IGLV2-14P01704 120 aa3.64□□□□□ -1.83
SCN1A-218ENST00000640036 PTH2Q96A98 100 aa3.64□□□□□ -1.83
SCN1A-218ENST00000640036 XAGE1AQ9HD64 81 aa3.64□□□□□ -1.83
SCN1A-218ENST00000640036 TRBV7-6A0A0J9YX20 115 aa3.63□□□□□ -1.83
SCN1A-218ENST00000640036 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP3.63□□□□□ -1.83
SCN1A-218ENST00000640036 ZFAND3Q9H8U3 227 aa3.63□□□□□ -1.83
SCN1A-218ENST00000640036 GOLGB1Q14789 3259 aaKnown RBP3.63□□□□□ -1.83
SCN1A-218ENST00000640036 LOC105371267A0A1B0GV96 52 aa3.63□□□□□ -1.83
SCN1A-218ENST00000640036 GDF5OSQ5U4N7 250 aa3.63□□□□□ -1.83
SCN1A-218ENST00000640036 C2orf48Q96LS8 159 aa3.63□□□□□ -1.83
SCN1A-218ENST00000640036 TRAV7A0A075B6U4 112 aa3.63□□□□□ -1.83
SCN1A-218ENST00000640036 TRBV10-3A0A0K0K1G6 114 aa3.63□□□□□ -1.83
SCN1A-218ENST00000640036 WFDC10BQ8IUB3 73 aa3.63□□□□□ -1.83
SCN1A-218ENST00000640036 COX6A2Q02221 97 aa3.63□□□□□ -1.83
SCN1A-218ENST00000640036 PIK3CD-AS1Q5SR53 167 aa3.63□□□□□ -1.83
SCN1A-218ENST00000640036 CELA1Q9UNI1 258 aa3.63□□□□□ -1.83
SCN1A-218ENST00000640036 CRIP2P52943 208 aaPredicted RBP3.63□□□□□ -1.83
SCN1A-218ENST00000640036 HRCT1Q6UXD1 115 aa3.63□□□□□ -1.83
SCN1A-218ENST00000640036 LINC00467Q9BRT7 94 aa3.63□□□□□ -1.83
SCN1A-218ENST00000640036 TP53TG3Q9ULZ0 132 aa3.63□□□□□ -1.83
SCN1A-218ENST00000640036 PCSK5Q92824 1860 aa3.62□□□□□ -1.83
SCN1A-218ENST00000640036 COL4A2P08572 1712 aa3.62□□□□□ -1.83
SCN1A-218ENST00000640036 TMEM223A0PJW6 202 aa3.62□□□□□ -1.83
SCN1A-218ENST00000640036 SNURFQ9Y675 71 aa3.62□□□□□ -1.83
SCN1A-218ENST00000640036 MIR7-3HGQ8N6C7 128 aa3.62□□□□□ -1.83
SCN1A-218ENST00000640036 DAND5Q8N907 189 aa3.62□□□□□ -1.83
SCN1A-218ENST00000640036 Q6ZRP5 223 aa3.62□□□□□ -1.83
SCN1A-218ENST00000640036 IGKV2-28A0A075B6P5 120 aa3.62□□□□□ -1.83
SCN1A-218ENST00000640036 IGKV2D-28P01615 120 aa3.62□□□□□ -1.83
SCN1A-218ENST00000640036 BEAN1Q3B7T3 259 aa3.62□□□□□ -1.83
SCN1A-218ENST00000640036 A0A0J9YXV3 536 aa3.62□□□□□ -1.83
SCN1A-218ENST00000640036 RTL8CO15255 209 aa3.62□□□□□ -1.83
SCN1A-218ENST00000640036 CCKP06307 115 aa3.62□□□□□ -1.83
SCN1A-218ENST00000640036 SPAG11AQ6PDA7 123 aa3.61□□□□□ -1.83
SCN1A-218ENST00000640036 NEXN-AS1Q8NBZ9 246 aa3.61□□□□□ -1.83
SCN1A-218ENST00000640036 CR1P17927 2039 aa3.61□□□□□ -1.83
SCN1A-218ENST00000640036 M0R378 163 aa3.61□□□□□ -1.83
SCN1A-218ENST00000640036 LYPD5Q6UWN5 251 aa3.61□□□□□ -1.83
SCN1A-218ENST00000640036 TYMSOSQ8TAI1 123 aa3.61□□□□□ -1.83
SCN1A-218ENST00000640036 CLEC2BQ92478 149 aa3.61□□□□□ -1.83
SCN1A-218ENST00000640036 C20orf203Q8NBC4 194 aa3.6□□□□□ -1.83
SCN1A-218ENST00000640036 RNASE8Q8TDE3 154 aaKnown RBP3.6□□□□□ -1.83
SCN1A-218ENST00000640036 LINC00315P59091 139 aa3.6□□□□□ -1.83
SCN1A-218ENST00000640036 PATE2Q6UY27 113 aa3.6□□□□□ -1.83
SCN1A-218ENST00000640036 LST1O00453 97 aa3.6□□□□□ -1.83
SCN1A-218ENST00000640036 CRYGAP11844 174 aa3.6□□□□□ -1.83
SCN1A-218ENST00000640036 ACYP2P14621 99 aa3.6□□□□□ -1.83
SCN1A-218ENST00000640036 TRBV30A0A0K0K1B3 111 aa3.6□□□□□ -1.83
SCN1A-218ENST00000640036 COX7CP15954 63 aa3.6□□□□□ -1.83
SCN1A-218ENST00000640036 H3BNG1 76 aa3.6□□□□□ -1.83
SCN1A-218ENST00000640036 KIAA0087Q14695 138 aa3.6□□□□□ -1.83
SCN1A-218ENST00000640036 TRBV27A0A0K0K1C4 114 aa3.6□□□□□ -1.83
SCN1A-218ENST00000640036 LOC100131303A0A0U1RQF7 123 aa3.6□□□□□ -1.83
SCN1A-218ENST00000640036 RPL37AP8A6NKH3 93 aa3.6□□□□□ -1.83
SCN1A-218ENST00000640036 CYYR1Q96J86 154 aa3.6□□□□□ -1.83
SCN1A-218ENST00000640036 PYGO1Q9Y3Y4 419 aa3.6□□□□□ -1.83
SCN1A-218ENST00000640036 C8orf87E5RJ46 101 aa3.6□□□□□ -1.83
SCN1A-218ENST00000640036 EGFEM1PQ0D2K5 195 aa3.59□□□□□ -1.83
SCN1A-218ENST00000640036 H3BPC8 53 aa3.59□□□□□ -1.83
SCN1A-218ENST00000640036 LINC00173Q6ZV60 143 aa3.59□□□□□ -1.83
SCN1A-218ENST00000640036 RPL39P62891 51 aaKnown RBP3.59□□□□□ -1.83
SCN1A-218ENST00000640036 K7ERJ3 54 aa3.58□□□□□ -1.84
SCN1A-218ENST00000640036 LINC00959A0A1B0GUT2 108 aa3.58□□□□□ -1.84
SCN1A-218ENST00000640036 IGLC6P0CF74 106 aa3.58□□□□□ -1.84
SCN1A-218ENST00000640036 Q6ZQY7 126 aa3.58□□□□□ -1.84
SCN1A-218ENST00000640036 IGSF10Q6WRI0 2623 aa3.58□□□□□ -1.84
SCN1A-218ENST00000640036 ADCYAP1P18509 176 aa3.58□□□□□ -1.84
SCN1A-218ENST00000640036 LINC00526Q96FQ7 95 aa3.58□□□□□ -1.84
SCN1A-218ENST00000640036 FAM167A-AS1Q96KT0 104 aa3.58□□□□□ -1.84
SCN1A-218ENST00000640036 NBEAL1Q6ZS30 2694 aa3.58□□□□□ -1.84
SCN1A-218ENST00000640036 ZNF292O60281 2723 aa3.58□□□□□ -1.84
SCN1A-218ENST00000640036 STAB2Q8WWQ8 2551 aa3.58□□□□□ -1.84
SCN1A-218ENST00000640036 RETNLBQ9BQ08 111 aa3.58□□□□□ -1.84
SCN1A-218ENST00000640036 TRBV6-5A0A0K0K1A5 114 aa3.57□□□□□ -1.84
SCN1A-218ENST00000640036 ZNF726P1Q15940 193 aa3.57□□□□□ -1.84
SCN1A-218ENST00000640036 LUZP6Q538Z0 58 aa3.57□□□□□ -1.84
SCN1A-218ENST00000640036 ENHOQ6UWT2 76 aa3.57□□□□□ -1.84
SCN1A-218ENST00000640036 C10orf91Q5T1B1 145 aa3.57□□□□□ -1.84
SCN1A-218ENST00000640036 KRTAP21-3Q3LHN1 58 aa3.57□□□□□ -1.84
SCN1A-218ENST00000640036 KLLNB2CW77 178 aa3.57□□□□□ -1.84
SCN1A-218ENST00000640036 FLNCQ14315 2725 aa3.57□□□□□ -1.84
SCN1A-218ENST00000640036 CYSRT1A8MQ03 144 aa3.57□□□□□ -1.84
SCN1A-218ENST00000640036 FHL2Q14192 279 aa3.57□□□□□ -1.84
SCN1A-218ENST00000640036 CCDC179H3BU77 68 aa3.56□□□□□ -1.84
SCN1A-218ENST00000640036 ESRGQ1W209 222 aa3.56□□□□□ -1.84
SCN1A-218ENST00000640036 C9orf116Q5BN46 136 aaPredicted RBP3.56□□□□□ -1.84
SCN1A-218ENST00000640036 UTRNP46939 3433 aa3.56□□□□□ -1.84
SCN1A-218ENST00000640036 BRWD1-AS2P59051 145 aa3.56□□□□□ -1.84
SCN1A-218ENST00000640036 BCE1O60756 84 aa3.56□□□□□ -1.84
SCN1A-218ENST00000640036 SMR3BP02814 79 aaPredicted RBP3.56□□□□□ -1.84
SCN1A-218ENST00000640036 Q6ZPA2 131 aa3.56□□□□□ -1.84
SCN1A-218ENST00000640036 CASC10Q5T4H9 136 aa3.56□□□□□ -1.84
SCN1A-218ENST00000640036 TP73-AS1Q9UF72 201 aa3.56□□□□□ -1.84
SCN1A-218ENST00000640036 ZNF73O43830 326 aaPredicted RBP3.55□□□□□ -1.84
SCN1A-218ENST00000640036 SPACA4Q8TDM5 124 aa3.55□□□□□ -1.84
SCN1A-218ENST00000640036 KIF25-AS1Q9Y6Z4 181 aa3.55□□□□□ -1.84
Retrieved 100 of 20,778 RNA–protein pairs in 43.5 ms