RNA–Protein interactions for RNA: ENST00000637988.1

SCN1A-217, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene SCN1A, Length 8,562 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-217ENST00000637988 TSHBP01222 138 aa4.42□□□□□ -1.7
SCN1A-217ENST00000637988 WISP2O76076 250 aa4.42□□□□□ -1.7
SCN1A-217ENST00000637988 SMIM11BQ8TCY0 68 aa4.42□□□□□ -1.7
SCN1A-217ENST00000637988 MT-ATP8P03928 68 aa4.41□□□□□ -1.7
SCN1A-217ENST00000637988 SBSPONQ8IVN8 264 aa4.41□□□□□ -1.7
SCN1A-217ENST00000637988 CSDC2Q9Y534 153 aaKnown RBP4.41□□□□□ -1.7
SCN1A-217ENST00000637988 IGKV2D-30A0A075B6S6 120 aa4.41□□□□□ -1.7
SCN1A-217ENST00000637988 IGKV2-30P06310 120 aa4.41□□□□□ -1.7
SCN1A-217ENST00000637988 CRYGAP11844 174 aa4.41□□□□□ -1.7
SCN1A-217ENST00000637988 PRR4Q16378 134 aa4.41□□□□□ -1.7
SCN1A-217ENST00000637988 Q6ZS46 218 aa4.4□□□□□ -1.7
SCN1A-217ENST00000637988 UQCRQO14949 82 aa4.4□□□□□ -1.7
SCN1A-217ENST00000637988 LINC00173Q6ZV60 143 aa4.4□□□□□ -1.7
SCN1A-217ENST00000637988 UNQ6190/PRO20217Q6UXQ8 127 aa4.4□□□□□ -1.7
SCN1A-217ENST00000637988 A0A1B0GUV1 79 aa4.4□□□□□ -1.71
SCN1A-217ENST00000637988 LINC01547P58512 204 aaPredicted RBP4.4□□□□□ -1.71
SCN1A-217ENST00000637988 RNASE8Q8TDE3 154 aaKnown RBP4.4□□□□□ -1.71
SCN1A-217ENST00000637988 RTL8CO15255 209 aa4.4□□□□□ -1.71
SCN1A-217ENST00000637988 LINC00575Q6W349 94 aa4.4□□□□□ -1.71
SCN1A-217ENST00000637988 C22orf34Q6ZV56 151 aa4.4□□□□□ -1.71
SCN1A-217ENST00000637988 ZNF580Q9UK33 172 aa4.4□□□□□ -1.71
SCN1A-217ENST00000637988 FHL2Q14192 279 aa4.39□□□□□ -1.71
SCN1A-217ENST00000637988 RNASE3P12724 160 aaKnown RBP4.39□□□□□ -1.71
SCN1A-217ENST00000637988 TRBV10-3A0A0K0K1G6 114 aa4.39□□□□□ -1.71
SCN1A-217ENST00000637988 WFDC2Q14508 124 aa4.39□□□□□ -1.71
SCN1A-217ENST00000637988 ODF3L2Q3SX64 289 aa4.39□□□□□ -1.71
SCN1A-217ENST00000637988 TRIAP1O43715 76 aa4.39□□□□□ -1.71
SCN1A-217ENST00000637988 PRLHP81277 87 aa4.38□□□□□ -1.71
SCN1A-217ENST00000637988 LINC01561Q8N1V8 128 aa4.38□□□□□ -1.71
SCN1A-217ENST00000637988 NCOR2Q9Y618 2525 aa4.38□□□□□ -1.71
SCN1A-217ENST00000637988 AVPP01185 164 aa4.38□□□□□ -1.71
SCN1A-217ENST00000637988 C9orf116Q5BN46 136 aaPredicted RBP4.38□□□□□ -1.71
SCN1A-217ENST00000637988 MOBPQ13875 183 aa4.38□□□□□ -1.71
SCN1A-217ENST00000637988 ZNF295-AS1Q8N0V1 137 aa4.38□□□□□ -1.71
SCN1A-217ENST00000637988 SPATA3Q8NHX4 192 aa4.38□□□□□ -1.71
SCN1A-217ENST00000637988 SPTBN4Q9H254 2564 aa4.37□□□□□ -1.71
SCN1A-217ENST00000637988 Q8N814 137 aa4.37□□□□□ -1.71
SCN1A-217ENST00000637988 LINC00208Q96KT6 92 aa4.37□□□□□ -1.71
SCN1A-217ENST00000637988 CELA1Q9UNI1 258 aa4.37□□□□□ -1.71
SCN1A-217ENST00000637988 H0Y9P7 68 aa4.37□□□□□ -1.71
SCN1A-217ENST00000637988 SNURFQ9Y675 71 aa4.37□□□□□ -1.71
SCN1A-217ENST00000637988 LINC00313P59037 77 aa4.37□□□□□ -1.71
SCN1A-217ENST00000637988 KIF25-AS1Q9Y6Z4 181 aa4.37□□□□□ -1.71
SCN1A-217ENST00000637988 ACYP2P14621 99 aa4.37□□□□□ -1.71
SCN1A-217ENST00000637988 NBDYA0A0U1RRE5 68 aa4.37□□□□□ -1.71
SCN1A-217ENST00000637988 BRWD1-AS2P59051 145 aa4.36□□□□□ -1.71
SCN1A-217ENST00000637988 EIF4EBP1Q13541 118 aaPredicted RBP4.36□□□□□ -1.71
SCN1A-217ENST00000637988 NRACQ8N912 160 aa4.36□□□□□ -1.71
SCN1A-217ENST00000637988 ANKRD11Q6UB99 2663 aaPredicted RBP4.36□□□□□ -1.71
SCN1A-217ENST00000637988 PRM2P04554 102 aa4.36□□□□□ -1.71
SCN1A-217ENST00000637988 NTM-AS1Q6ZSK4 140 aa4.36□□□□□ -1.71
SCN1A-217ENST00000637988 CDIP1Q9H305 208 aa4.36□□□□□ -1.71
SCN1A-217ENST00000637988 TP53AIP1Q9HCN2 124 aa4.36□□□□□ -1.71
SCN1A-217ENST00000637988 IMUPQ9GZP8 106 aa4.36□□□□□ -1.71
SCN1A-217ENST00000637988 PKD1L2Q7Z442 2459 aa4.36□□□□□ -1.71
SCN1A-217ENST00000637988 CDSNQ15517 529 aa4.36□□□□□ -1.71
SCN1A-217ENST00000637988 HCG22E2RYF7 251 aa4.36□□□□□ -1.71
SCN1A-217ENST00000637988 H3BNG1 76 aa4.36□□□□□ -1.71
SCN1A-217ENST00000637988 A0A087WSZ3 146 aa4.35□□□□□ -1.71
SCN1A-217ENST00000637988 CRIP2P52943 208 aaPredicted RBP4.35□□□□□ -1.71
SCN1A-217ENST00000637988 TTTY13Q9BZ97 58 aa4.35□□□□□ -1.71
SCN1A-217ENST00000637988 COA6Q5JTJ3 125 aaKnown RBP4.35□□□□□ -1.71
SCN1A-217ENST00000637988 C22orf24Q9Y442 160 aa4.35□□□□□ -1.71
SCN1A-217ENST00000637988 KIAA0087Q14695 138 aa4.34□□□□□ -1.71
SCN1A-217ENST00000637988 LINC00336Q6ZUF6 198 aa4.34□□□□□ -1.71
SCN1A-217ENST00000637988 SMCR5Q8TEV8 140 aa4.34□□□□□ -1.71
SCN1A-217ENST00000637988 C11orf1Q9H5F2 150 aa4.34□□□□□ -1.71
SCN1A-217ENST00000637988 CRIP1P50238 77 aa4.34□□□□□ -1.71
SCN1A-217ENST00000637988 Q8NBF4 154 aa4.33□□□□□ -1.72
SCN1A-217ENST00000637988 PCOTHQ58A44 107 aa4.33□□□□□ -1.72
SCN1A-217ENST00000637988 TP73-AS1Q9UF72 201 aa4.33□□□□□ -1.72
SCN1A-217ENST00000637988 KRTAP24-1Q3LI83 254 aa4.33□□□□□ -1.72
SCN1A-217ENST00000637988 A8MZ25 164 aa4.33□□□□□ -1.72
SCN1A-217ENST00000637988 LINC00315P59091 139 aa4.33□□□□□ -1.72
SCN1A-217ENST00000637988 FASNP49327 2511 aaKnown RBP4.32□□□□□ -1.72
SCN1A-217ENST00000637988 POLR2KP53803 58 aaKnown RBP4.32□□□□□ -1.72
SCN1A-217ENST00000637988 PTH2Q96A98 100 aa4.32□□□□□ -1.72
SCN1A-217ENST00000637988 RBM12B-AS1Q9P1G2 102 aa4.32□□□□□ -1.72
SCN1A-217ENST00000637988 PRR9Q5T870 116 aa4.32□□□□□ -1.72
SCN1A-217ENST00000637988 IGLV4-60A0A075B6I1 120 aa4.32□□□□□ -1.72
SCN1A-217ENST00000637988 Q6ZRU5 148 aa4.32□□□□□ -1.72
SCN1A-217ENST00000637988 Q96NJ1 140 aa4.32□□□□□ -1.72
SCN1A-217ENST00000637988 TRAV7A0A075B6U4 112 aa4.32□□□□□ -1.72
SCN1A-217ENST00000637988 LINC00242Q5T6M2 205 aa4.31□□□□□ -1.72
SCN1A-217ENST00000637988 COL4A2P08572 1712 aa4.31□□□□□ -1.72
SCN1A-217ENST00000637988 BEAN1Q3B7T3 259 aa4.31□□□□□ -1.72
SCN1A-217ENST00000637988 Q6ZSN1 163 aa4.31□□□□□ -1.72
SCN1A-217ENST00000637988 A0A0U1RQV1 116 aa4.3□□□□□ -1.72
SCN1A-217ENST00000637988 A0A1B0GU69 56 aa4.3□□□□□ -1.72
SCN1A-217ENST00000637988 SPAG11AQ6PDA7 123 aa4.3□□□□□ -1.72
SCN1A-217ENST00000637988 SMIM1B2RUZ4 78 aa4.3□□□□□ -1.72
SCN1A-217ENST00000637988 CHTF8P0CG12 524 aa4.3□□□□□ -1.72
SCN1A-217ENST00000637988 FLG2Q5D862 2391 aaPredicted RBP4.3□□□□□ -1.72
SCN1A-217ENST00000637988 DEFB116Q30KQ4 102 aa4.3□□□□□ -1.72
SCN1A-217ENST00000637988 MTORP42345 2549 aa4.3□□□□□ -1.72
SCN1A-217ENST00000637988 POLQO75417 2590 aa4.3□□□□□ -1.72
SCN1A-217ENST00000637988 SETD2Q9BYW2 2564 aaPredicted RBP4.3□□□□□ -1.72
SCN1A-217ENST00000637988 PRR3P79522 188 aaKnown RBP4.3□□□□□ -1.72
SCN1A-217ENST00000637988 CNFNQ9BYD5 112 aa4.29□□□□□ -1.72
SCN1A-217ENST00000637988 C1orf64Q8NEQ6 169 aa4.29□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 58 ms