RNA–Protein interactions for RNA: ENST00000637050.1

CLN3-254, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,684 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-254ENST00000637050 GAGE10A6NGK3 116 aa12.27□□□□□ -0.45
CLN3-254ENST00000637050 PRSS2P07478 247 aa12.27□□□□□ -0.45
CLN3-254ENST00000637050 C6orf226Q5I0X4 101 aa12.27□□□□□ -0.45
CLN3-254ENST00000637050 BVES-AS1Q5T3Y7 98 aa12.27□□□□□ -0.45
CLN3-254ENST00000637050 RMI2Q96E14 147 aa12.27□□□□□ -0.45
CLN3-254ENST00000637050 STARD9Q9P2P6 4700 aa12.26□□□□□ -0.45
CLN3-254ENST00000637050 HERV-K104P63124 156 aa12.26□□□□□ -0.45
CLN3-254ENST00000637050 TAL2Q16559 108 aa12.26□□□□□ -0.45
CLN3-254ENST00000637050 SFTA2Q6UW10 78 aa12.26□□□□□ -0.45
CLN3-254ENST00000637050 SPANXB1Q9NS25 103 aaPredicted RBP12.26□□□□□ -0.45
CLN3-254ENST00000637050 LITAFQ99732 161 aa12.25□□□□□ -0.45
CLN3-254ENST00000637050 TGP01266 2768 aa12.24□□□□□ -0.45
CLN3-254ENST00000637050 TIMM17BO60830 172 aa12.24□□□□□ -0.45
CLN3-254ENST00000637050 TTC32Q5I0X7 151 aa12.24□□□□□ -0.45
CLN3-254ENST00000637050 CASC10Q5T4H9 136 aa12.24□□□□□ -0.45
CLN3-254ENST00000637050 Q6ZVH6 145 aa12.24□□□□□ -0.45
CLN3-254ENST00000637050 HIST1H4GQ99525 98 aa12.24□□□□□ -0.45
CLN3-254ENST00000637050 NBDYA0A0U1RRE5 68 aa12.23□□□□□ -0.45
CLN3-254ENST00000637050 CXCL5P42830 114 aa12.23□□□□□ -0.45
CLN3-254ENST00000637050 SPAG11BQ08648 103 aa12.23□□□□□ -0.45
CLN3-254ENST00000637050 SIGMAR1Q99720 223 aa12.23□□□□□ -0.45
CLN3-254ENST00000637050 C3orf84H3BNL1 204 aa12.22□□□□□ -0.45
CLN3-254ENST00000637050 J3QR89 54 aa12.22□□□□□ -0.45
CLN3-254ENST00000637050 C15orf56Q8N910 161 aa12.22□□□□□ -0.45
CLN3-254ENST00000637050 PLECQ15149 4684 aaKnown RBP12.22□□□□□ -0.45
CLN3-254ENST00000637050 CKS1BP61024 79 aa12.22□□□□□ -0.45
CLN3-254ENST00000637050 SRSF9Q13242 221 aaKnown RBP eCLIP12.22□□□□□ -0.45
CLN3-254ENST00000637050 C2orf82Q6UX34 121 aa12.22□□□□□ -0.45
CLN3-254ENST00000637050 TENM2Q9NT68 2774 aa12.22□□□□□ -0.45
CLN3-254ENST00000637050 A6NDN8 102 aa12.21□□□□□ -0.45
CLN3-254ENST00000637050 CEND1Q8N111 149 aa12.21□□□□□ -0.45
CLN3-254ENST00000637050 TM2D2Q9BX73 214 aa12.21□□□□□ -0.45
CLN3-254ENST00000637050 CIRBPQ14011 172 aaKnown RBP12.2□□□□□ -0.46
CLN3-254ENST00000637050 ADAMTSL4-AS1Q5T5F5 129 aa12.2□□□□□ -0.46
CLN3-254ENST00000637050 GCSHP23434 173 aa12.19□□□□□ -0.46
CLN3-254ENST00000637050 NTN5Q8WTR8 489 aaPredicted RBP12.19□□□□□ -0.46
CLN3-254ENST00000637050 SPANXDQ9BXN6 97 aa12.19□□□□□ -0.46
CLN3-254ENST00000637050 SPANXCQ9NY87 97 aa12.19□□□□□ -0.46
CLN3-254ENST00000637050 K7EP34 96 aa12.19□□□□□ -0.46
CLN3-254ENST00000637050 MEIG1Q5JSS6 88 aa12.19□□□□□ -0.46
CLN3-254ENST00000637050 C6orf223Q8N319 242 aa12.19□□□□□ -0.46
CLN3-254ENST00000637050 LYSTQ99698 3801 aa12.18□□□□□ -0.46
CLN3-254ENST00000637050 GVQW2A0A096LPI5 108 aaPredicted RBP12.18□□□□□ -0.46
CLN3-254ENST00000637050 LINC00526Q96FQ7 95 aa12.18□□□□□ -0.46
CLN3-254ENST00000637050 FXYD2P54710 66 aa12.17□□□□□ -0.46
CLN3-254ENST00000637050 HIGD2BQ4VC39 106 aa12.17□□□□□ -0.46
CLN3-254ENST00000637050 C9orf118A6NHY6 69 aa12.16□□□□□ -0.46
CLN3-254ENST00000637050 ZNF561-AS1K7EIQ3 104 aa12.16□□□□□ -0.46
CLN3-254ENST00000637050 SMIM13P0DJ93 91 aa12.16□□□□□ -0.46
CLN3-254ENST00000637050 ERG28Q9UKR5 140 aa12.16□□□□□ -0.46
CLN3-254ENST00000637050 DNAH1Q9P2D7 4330 aa12.15□□□□□ -0.46
CLN3-254ENST00000637050 C10orf25Q5T742 122 aa12.15□□□□□ -0.46
CLN3-254ENST00000637050 UNQ6190/PRO20217Q6UXQ8 127 aa12.15□□□□□ -0.46
CLN3-254ENST00000637050 C2orf48Q96LS8 159 aa12.15□□□□□ -0.46
CLN3-254ENST00000637050 A0A0U1RRA0 63 aa12.14□□□□□ -0.47
CLN3-254ENST00000637050 USP17L23D6RBM5 183 aa12.14□□□□□ -0.47
CLN3-254ENST00000637050 DAND5Q8N907 189 aa12.14□□□□□ -0.47
CLN3-254ENST00000637050 F8WDY8 70 aa12.13□□□□□ -0.47
CLN3-254ENST00000637050 MUSTN1Q8IVN3 82 aa12.13□□□□□ -0.47
CLN3-254ENST00000637050 LINC00476Q8WZB0 136 aa12.13□□□□□ -0.47
CLN3-254ENST00000637050 IFITM1P13164 125 aa12.13□□□□□ -0.47
CLN3-254ENST00000637050 Q6ZR54 194 aa12.13□□□□□ -0.47
CLN3-254ENST00000637050 LY6G6CO95867 125 aa12.12□□□□□ -0.47
CLN3-254ENST00000637050 PFN2P35080 140 aa12.12□□□□□ -0.47
CLN3-254ENST00000637050 LINC00158P58513 81 aa12.12□□□□□ -0.47
CLN3-254ENST00000637050 COX17Q14061 63 aa12.12□□□□□ -0.47
CLN3-254ENST00000637050 CAMK2N2Q96S95 79 aa12.12□□□□□ -0.47
CLN3-254ENST00000637050 M0R2N4 97 aa12.11□□□□□ -0.47
CLN3-254ENST00000637050 Q6ZRN7 208 aaPredicted RBP12.11□□□□□ -0.47
CLN3-254ENST00000637050 VPS13DQ5THJ4 4388 aa12.1□□□□□ -0.47
CLN3-254ENST00000637050 PSCAO43653 123 aa12.1□□□□□ -0.47
CLN3-254ENST00000637050 C9orf116Q5BN46 136 aaPredicted RBP12.1□□□□□ -0.47
CLN3-254ENST00000637050 MIR7-3HGQ8N6C7 128 aa12.1□□□□□ -0.47
CLN3-254ENST00000637050 LINC00308Q8TCZ7 52 aa12.1□□□□□ -0.47
CLN3-254ENST00000637050 C6orf48Q9UBA6 75 aa12.1□□□□□ -0.47
CLN3-254ENST00000637050 TRBV30A0A0K0K1B3 111 aa12.1□□□□□ -0.47
CLN3-254ENST00000637050 EIF4EBP3O60516 100 aaPredicted RBP12.1□□□□□ -0.47
CLN3-254ENST00000637050 RPL24P83731 157 aaKnown RBP12.1□□□□□ -0.47
CLN3-254ENST00000637050 PPDPFQ9H3Y8 114 aa12.1□□□□□ -0.47
CLN3-254ENST00000637050 NPC2P61916 151 aa12.09□□□□□ -0.47
CLN3-254ENST00000637050 Q6ZRU5 148 aa12.09□□□□□ -0.47
CLN3-254ENST00000637050 LECT2O14960 151 aa12.08□□□□□ -0.48
CLN3-254ENST00000637050 WFDC2Q14508 124 aa12.08□□□□□ -0.48
CLN3-254ENST00000637050 SOSTDC1Q6X4U4 206 aa12.08□□□□□ -0.48
CLN3-254ENST00000637050 COPS9Q8WXC6 57 aa12.08□□□□□ -0.48
CLN3-254ENST00000637050 NHP2Q9NX24 153 aaKnown RBP12.08□□□□□ -0.48
CLN3-254ENST00000637050 A0A1B0GWB2 263 aa12.07□□□□□ -0.48
CLN3-254ENST00000637050 A4D1N5 150 aa12.07□□□□□ -0.48
CLN3-254ENST00000637050 FABP2P12104 132 aa12.07□□□□□ -0.48
CLN3-254ENST00000637050 SYCNQ0VAF6 134 aa12.06□□□□□ -0.48
CLN3-254ENST00000637050 SLPIP03973 132 aa12.06□□□□□ -0.48
CLN3-254ENST00000637050 SPCS1Q9Y6A9 102 aa12.06□□□□□ -0.48
CLN3-254ENST00000637050 A0A1W2PPM0 123 aa12.04□□□□□ -0.48
CLN3-254ENST00000637050 LRCOL1A6NCL2 159 aa12.03□□□□□ -0.48
CLN3-254ENST00000637050 CFC1BP0CG36 223 aa12.03□□□□□ -0.48
CLN3-254ENST00000637050 CFC1P0CG37 223 aa12.03□□□□□ -0.48
CLN3-254ENST00000637050 TRAV16A0A0A6YYK6 109 aaPredicted RBP12.03□□□□□ -0.48
CLN3-254ENST00000637050 LOC107984156A0A0G2JMH3 177 aa12.03□□□□□ -0.48
CLN3-254ENST00000637050 K7ERJ3 54 aa12.03□□□□□ -0.48
CLN3-254ENST00000637050 ARL17AQ8IVW1 177 aa12.03□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 79.3 ms