RNA–Protein interactions for RNA: ENST00000635750.1

SCN1A-209, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene SCN1A, Length 8,299 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-209ENST00000635750 A8MZ25 164 aa4.02□□□□□ -1.77
SCN1A-209ENST00000635750 KLLNB2CW77 178 aa4.02□□□□□ -1.77
SCN1A-209ENST00000635750 A0A1W2PNU3 283 aaPredicted RBP4.01□□□□□ -1.77
SCN1A-209ENST00000635750 SMR3AQ99954 134 aa4.01□□□□□ -1.77
SCN1A-209ENST00000635750 IGLV1-40P01703 118 aa4.01□□□□□ -1.77
SCN1A-209ENST00000635750 A0A087WSZ3 146 aa4.01□□□□□ -1.77
SCN1A-209ENST00000635750 CACNA1AO00555 2505 aa4.01□□□□□ -1.77
SCN1A-209ENST00000635750 MAPKAPK5-AS1Q8N8E1 139 aa4□□□□□ -1.77
SCN1A-209ENST00000635750 NOTCH2Q04721 2471 aa4□□□□□ -1.77
SCN1A-209ENST00000635750 BDP1A6H8Y1 2624 aa4□□□□□ -1.77
SCN1A-209ENST00000635750 C9orf116Q5BN46 136 aaPredicted RBP4□□□□□ -1.77
SCN1A-209ENST00000635750 TP53AIP1Q9HCN2 124 aa4□□□□□ -1.77
SCN1A-209ENST00000635750 CRIP1P50238 77 aa4□□□□□ -1.77
SCN1A-209ENST00000635750 COX6B2Q6YFQ2 88 aa4□□□□□ -1.77
SCN1A-209ENST00000635750 C16orf95Q9H693 158 aa4□□□□□ -1.77
SCN1A-209ENST00000635750 MYO9AB2RTY4 2548 aa4□□□□□ -1.77
SCN1A-209ENST00000635750 ATP11AUNQ6ZP68 121 aa4□□□□□ -1.77
SCN1A-209ENST00000635750 PSPHP1O15172 72 aa4□□□□□ -1.77
SCN1A-209ENST00000635750 C1orf229Q6ZS94 237 aaPredicted RBP4□□□□□ -1.77
SCN1A-209ENST00000635750 C16orf90A8MZG2 172 aa3.99□□□□□ -1.77
SCN1A-209ENST00000635750 TYMSOSQ8TAI1 123 aa3.99□□□□□ -1.77
SCN1A-209ENST00000635750 IGLV1-51P01701 117 aa3.99□□□□□ -1.77
SCN1A-209ENST00000635750 CUL9Q8IWT3 2517 aa3.99□□□□□ -1.77
SCN1A-209ENST00000635750 SOSTDC1Q6X4U4 206 aa3.99□□□□□ -1.77
SCN1A-209ENST00000635750 DEFB116Q30KQ4 102 aa3.99□□□□□ -1.77
SCN1A-209ENST00000635750 C1orf64Q8NEQ6 169 aa3.99□□□□□ -1.77
SCN1A-209ENST00000635750 PRM2P04554 102 aa3.99□□□□□ -1.77
SCN1A-209ENST00000635750 LINC00313P59037 77 aa3.99□□□□□ -1.77
SCN1A-209ENST00000635750 SPINT4Q6UDR6 99 aa3.99□□□□□ -1.77
SCN1A-209ENST00000635750 MDFIQ99750 246 aa3.98□□□□□ -1.77
SCN1A-209ENST00000635750 LYPD5Q6UWN5 251 aa3.98□□□□□ -1.77
SCN1A-209ENST00000635750 MOBPQ13875 183 aa3.98□□□□□ -1.77
SCN1A-209ENST00000635750 TTC28Q96AY4 2481 aa3.98□□□□□ -1.77
SCN1A-209ENST00000635750 FHL3Q13643 280 aa3.98□□□□□ -1.77
SCN1A-209ENST00000635750 LINC01561Q8N1V8 128 aa3.98□□□□□ -1.77
SCN1A-209ENST00000635750 FHL2Q14192 279 aa3.98□□□□□ -1.77
SCN1A-209ENST00000635750 A0A1B0GUV1 79 aa3.97□□□□□ -1.77
SCN1A-209ENST00000635750 POLR2KP53803 58 aaKnown RBP3.97□□□□□ -1.77
SCN1A-209ENST00000635750 SERTAD4-AS1Q5TG53 156 aa3.97□□□□□ -1.77
SCN1A-209ENST00000635750 ZFYVE26Q68DK2 2539 aa3.97□□□□□ -1.77
SCN1A-209ENST00000635750 Q8N3U1 123 aa3.97□□□□□ -1.77
SCN1A-209ENST00000635750 SMCR5Q8TEV8 140 aa3.97□□□□□ -1.77
SCN1A-209ENST00000635750 COL27A1Q8IZC6 1860 aaPredicted RBP3.97□□□□□ -1.77
SCN1A-209ENST00000635750 PRR3P79522 188 aaKnown RBP3.97□□□□□ -1.77
SCN1A-209ENST00000635750 Q8N6K4 173 aa3.97□□□□□ -1.77
SCN1A-209ENST00000635750 Q6ZS46 218 aa3.97□□□□□ -1.77
SCN1A-209ENST00000635750 LINC00694P0DN24 101 aa3.96□□□□□ -1.77
SCN1A-209ENST00000635750 C6orf48Q9UBA6 75 aa3.96□□□□□ -1.77
SCN1A-209ENST00000635750 LINC00242Q5T6M2 205 aa3.96□□□□□ -1.78
SCN1A-209ENST00000635750 VPREB1P12018 145 aa3.96□□□□□ -1.78
SCN1A-209ENST00000635750 C22orf24Q9Y442 160 aa3.96□□□□□ -1.78
SCN1A-209ENST00000635750 A0A087WYN8 130 aa3.96□□□□□ -1.78
SCN1A-209ENST00000635750 SMIM1B2RUZ4 78 aa3.95□□□□□ -1.78
SCN1A-209ENST00000635750 WISP2O76076 250 aa3.95□□□□□ -1.78
SCN1A-209ENST00000635750 EIF4EBP1Q13541 118 aaPredicted RBP3.95□□□□□ -1.78
SCN1A-209ENST00000635750 PRR9Q5T870 116 aa3.95□□□□□ -1.78
SCN1A-209ENST00000635750 Q6ZRP5 223 aa3.95□□□□□ -1.78
SCN1A-209ENST00000635750 CRIP2P52943 208 aaPredicted RBP3.95□□□□□ -1.78
SCN1A-209ENST00000635750 IGLV4-60A0A075B6I1 120 aa3.95□□□□□ -1.78
SCN1A-209ENST00000635750 CCDC179H3BU77 68 aa3.95□□□□□ -1.78
SCN1A-209ENST00000635750 CXCL6P80162 114 aa3.95□□□□□ -1.78
SCN1A-209ENST00000635750 ODF3L2Q3SX64 289 aa3.95□□□□□ -1.78
SCN1A-209ENST00000635750 TMEM254Q8TBM7 123 aa3.95□□□□□ -1.78
SCN1A-209ENST00000635750 YPEL4Q96NS1 127 aa3.94□□□□□ -1.78
SCN1A-209ENST00000635750 C11orf1Q9H5F2 150 aa3.94□□□□□ -1.78
SCN1A-209ENST00000635750 IGIPA6NJ69 53 aa3.94□□□□□ -1.78
SCN1A-209ENST00000635750 Q6ZRU5 148 aa3.94□□□□□ -1.78
SCN1A-209ENST00000635750 KIF25-AS1Q9Y6Z4 181 aa3.94□□□□□ -1.78
SCN1A-209ENST00000635750 TRAV22A0A0B4J277 110 aa3.93□□□□□ -1.78
SCN1A-209ENST00000635750 Q96NJ1 140 aa3.93□□□□□ -1.78
SCN1A-209ENST00000635750 RPL37AP61513 92 aaKnown RBP3.93□□□□□ -1.78
SCN1A-209ENST00000635750 BRWD1-AS2P59051 145 aa3.93□□□□□ -1.78
SCN1A-209ENST00000635750 CNFNQ9BYD5 112 aa3.92□□□□□ -1.78
SCN1A-209ENST00000635750 RTL8CO15255 209 aa3.92□□□□□ -1.78
SCN1A-209ENST00000635750 Q8NBF4 154 aa3.92□□□□□ -1.78
SCN1A-209ENST00000635750 KIAA0087Q14695 138 aa3.92□□□□□ -1.78
SCN1A-209ENST00000635750 C8orf87E5RJ46 101 aa3.92□□□□□ -1.78
SCN1A-209ENST00000635750 C2CD3Q4AC94 2353 aa3.92□□□□□ -1.78
SCN1A-209ENST00000635750 CRIPTQ9P021 101 aa3.91□□□□□ -1.78
SCN1A-209ENST00000635750 C11orf21Q9P2W6 132 aa3.91□□□□□ -1.78
SCN1A-209ENST00000635750 A0A1B0GW54 56 aa3.91□□□□□ -1.78
SCN1A-209ENST00000635750 WWC2-AS2Q96NR7 200 aa3.91□□□□□ -1.78
SCN1A-209ENST00000635750 Q9UF83 564 aa3.91□□□□□ -1.78
SCN1A-209ENST00000635750 F8P00451 2351 aa3.91□□□□□ -1.78
SCN1A-209ENST00000635750 IGLV8-61A0A075B6I0 122 aa3.9□□□□□ -1.78
SCN1A-209ENST00000635750 C2orf91Q6ZV80 131 aa3.9□□□□□ -1.78
SCN1A-209ENST00000635750 AVPP01185 164 aa3.9□□□□□ -1.78
SCN1A-209ENST00000635750 FN1P02751 2386 aaKnown RBP3.9□□□□□ -1.78
SCN1A-209ENST00000635750 H3BPC8 53 aa3.9□□□□□ -1.79
SCN1A-209ENST00000635750 CHTF8P0CG12 524 aa3.9□□□□□ -1.79
SCN1A-209ENST00000635750 SSBP3-AS1Q7Z2R9 100 aa3.9□□□□□ -1.79
SCN1A-209ENST00000635750 AMELXQ99217 191 aa3.9□□□□□ -1.79
SCN1A-209ENST00000635750 KRTAP10-9P60411 292 aa3.9□□□□□ -1.79
SCN1A-209ENST00000635750 SMIM29Q86T20 159 aa3.9□□□□□ -1.79
SCN1A-209ENST00000635750 ZNF580Q9UK33 172 aa3.9□□□□□ -1.79
SCN1A-209ENST00000635750 ACANP16112 2415 aa3.89□□□□□ -1.79
SCN1A-209ENST00000635750 A0A087WVE0 104 aa3.89□□□□□ -1.79
SCN1A-209ENST00000635750 A8MTW9 85 aa3.89□□□□□ -1.79
SCN1A-209ENST00000635750 CDIP1Q9H305 208 aa3.89□□□□□ -1.79
SCN1A-209ENST00000635750 RBM12B-AS1Q9P1G2 102 aa3.89□□□□□ -1.79
Retrieved 100 of 20,778 RNA–protein pairs in 70 ms