RNA–Protein interactions for RNA: ENST00000629179.1

PNKP-223, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 4

Gene PNKP, Length 811 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-223ENST00000629179 LRP1Q07954 4544 aaKnown RBP8.85□□□□□ -0.99
PNKP-223ENST00000629179 PRSS2P07478 247 aa8.84□□□□□ -0.99
PNKP-223ENST00000629179 LINC00614P0C842 121 aa8.84□□□□□ -0.99
PNKP-223ENST00000629179 RAB5BP61020 215 aa8.84□□□□□ -0.99
PNKP-223ENST00000629179 HERC1Q15751 4861 aa8.84□□□□□ -0.99
PNKP-223ENST00000629179 GAGE2EQ4V326 116 aa8.84□□□□□ -0.99
PNKP-223ENST00000629179 C6orf226Q5I0X4 101 aa8.84□□□□□ -0.99
PNKP-223ENST00000629179 GAGE2DQ9UEU5 116 aa8.84□□□□□ -0.99
PNKP-223ENST00000629179 A0A096LNJ9 63 aa8.83□□□□□ -1
PNKP-223ENST00000629179 TRBV30A0A0K0K1B3 111 aa8.83□□□□□ -1
PNKP-223ENST00000629179 TINCRA0A1B0GVN0 87 aa8.83□□□□□ -1
PNKP-223ENST00000629179 Q8IZM0 81 aa8.83□□□□□ -1
PNKP-223ENST00000629179 LINC00469Q8N7U9 141 aa8.83□□□□□ -1
PNKP-223ENST00000629179 PACRGQ96M98 296 aaPredicted RBP8.83□□□□□ -1
PNKP-223ENST00000629179 FAM168BA1KXE4 195 aa8.82□□□□□ -1
PNKP-223ENST00000629179 COLCA2A8K830 154 aa8.82□□□□□ -1
PNKP-223ENST00000629179 CKS1BP61024 79 aa8.82□□□□□ -1
PNKP-223ENST00000629179 PMVKQ15126 192 aa8.82□□□□□ -1
PNKP-223ENST00000629179 PMCHL1Q16048 86 aa8.82□□□□□ -1
PNKP-223ENST00000629179 PHF5AQ7RTV0 110 aaKnown RBP8.82□□□□□ -1
PNKP-223ENST00000629179 CBLN2Q8IUK8 224 aa8.82□□□□□ -1
PNKP-223ENST00000629179 IGLV5-45A0A087WSX0 123 aa8.8□□□□□ -1
PNKP-223ENST00000629179 SMIM1B2RUZ4 78 aa8.8□□□□□ -1
PNKP-223ENST00000629179 NDUFA6P56556 154 aa8.8□□□□□ -1
PNKP-223ENST00000629179 NDUFC2-KCTD14E9PQ53 114 aa8.79□□□□□ -1
PNKP-223ENST00000629179 HBDP02042 147 aa8.79□□□□□ -1
PNKP-223ENST00000629179 PDZD11Q5EBL8 140 aa8.79□□□□□ -1
PNKP-223ENST00000629179 FAM19A5Q7Z5A7 132 aaPredicted RBP8.79□□□□□ -1
PNKP-223ENST00000629179 FAT3Q8TDW7 4589 aa8.78□□□□□ -1
PNKP-223ENST00000629179 SPINK8P0C7L1 97 aa8.78□□□□□ -1
PNKP-223ENST00000629179 C9orf129Q5T035 196 aaKnown RBP8.78□□□□□ -1
PNKP-223ENST00000629179 KRTAP7-1Q8IUC3 87 aa8.78□□□□□ -1
PNKP-223ENST00000629179 COX7B2Q8TF08 81 aa8.78□□□□□ -1
PNKP-223ENST00000629179 F8VRH5 84 aa8.77□□□□□ -1.01
PNKP-223ENST00000629179 PSORS1C2Q9UIG4 136 aa8.77□□□□□ -1.01
PNKP-223ENST00000629179 S100A6P06703 90 aa8.76□□□□□ -1.01
PNKP-223ENST00000629179 MT1HL1P0DM35 61 aa8.76□□□□□ -1.01
PNKP-223ENST00000629179 IGLC3P0DOY3 106 aa8.76□□□□□ -1.01
PNKP-223ENST00000629179 SRSF9Q13242 221 aaKnown RBP eCLIP8.76□□□□□ -1.01
PNKP-223ENST00000629179 KRTAP11-1Q8IUC1 163 aa8.76□□□□□ -1.01
PNKP-223ENST00000629179 ATP5LO75964 103 aa8.75□□□□□ -1.01
PNKP-223ENST00000629179 CXCL5P42830 114 aa8.75□□□□□ -1.01
PNKP-223ENST00000629179 SPINK6Q6UWN8 80 aa8.75□□□□□ -1.01
PNKP-223ENST00000629179 H3BRM9 83 aa8.74□□□□□ -1.01
PNKP-223ENST00000629179 BAGE3Q86Y29 109 aa8.74□□□□□ -1.01
PNKP-223ENST00000629179 XAGE1AQ9HD64 81 aa8.74□□□□□ -1.01
PNKP-223ENST00000629179 M0QXV9 152 aa8.73□□□□□ -1.01
PNKP-223ENST00000629179 TRGC2P03986 189 aa8.73□□□□□ -1.01
PNKP-223ENST00000629179 ZNF22P17026 224 aaPredicted RBP8.73□□□□□ -1.01
PNKP-223ENST00000629179 C1orf137Q5JT78 98 aa8.73□□□□□ -1.01
PNKP-223ENST00000629179 CHCHD1Q96BP2 118 aaKnown RBP8.73□□□□□ -1.01
PNKP-223ENST00000629179 SERTAD4-AS1Q5TG53 156 aa8.72□□□□□ -1.01
PNKP-223ENST00000629179 IGLV5-39A0A0G2JS06 123 aa8.71□□□□□ -1.02
PNKP-223ENST00000629179 C11orf86A6NJI1 115 aa8.71□□□□□ -1.02
PNKP-223ENST00000629179 UBE2BP63146 152 aa8.7□□□□□ -1.02
PNKP-223ENST00000629179 FAM19A2Q8N3H0 131 aa8.7□□□□□ -1.02
PNKP-223ENST00000629179 IFI27L1Q96BM0 104 aa8.7□□□□□ -1.02
PNKP-223ENST00000629179 LINC01600Q96MT4 127 aa8.7□□□□□ -1.02
PNKP-223ENST00000629179 IGLV7-43P04211 117 aa8.69□□□□□ -1.02
PNKP-223ENST00000629179 TMEM170BQ5T4T1 132 aa8.69□□□□□ -1.02
PNKP-223ENST00000629179 REG3GQ6UW15 175 aa8.69□□□□□ -1.02
PNKP-223ENST00000629179 CHTOPQ9Y3Y2 248 aaKnown RBP8.69□□□□□ -1.02
PNKP-223ENST00000629179 C22orf24Q9Y442 160 aa8.69□□□□□ -1.02
PNKP-223ENST00000629179 C5orf52A6NGY3 159 aa8.68□□□□□ -1.02
PNKP-223ENST00000629179 HSBP1O75506 76 aa8.68□□□□□ -1.02
PNKP-223ENST00000629179 TRAV12-1A0A0B4J245 112 aa8.66□□□□□ -1.02
PNKP-223ENST00000629179 SERF1AO75920 110 aa8.66□□□□□ -1.02
PNKP-223ENST00000629179 LINC00310P59036 64 aa8.66□□□□□ -1.02
PNKP-223ENST00000629179 PFN2P35080 140 aa8.65□□□□□ -1.02
PNKP-223ENST00000629179 AKR1D1P51857 326 aa8.65□□□□□ -1.02
PNKP-223ENST00000629179 SNRPEP62304 92 aaKnown RBP8.65□□□□□ -1.02
PNKP-223ENST00000629179 ZNF625Q96I27 306 aaPredicted RBP8.65□□□□□ -1.02
PNKP-223ENST00000629179 NUPR1O60356 82 aa8.64□□□□□ -1.03
PNKP-223ENST00000629179 KRTAP10-8P60410 259 aa8.64□□□□□ -1.03
PNKP-223ENST00000629179 LBHQ53QV2 105 aaPredicted RBP8.64□□□□□ -1.03
PNKP-223ENST00000629179 LINC00518Q8N0U6 118 aa8.64□□□□□ -1.03
PNKP-223ENST00000629179 TMEM223A0PJW6 202 aa8.63□□□□□ -1.03
PNKP-223ENST00000629179 ODF1Q14990 250 aa8.63□□□□□ -1.03
PNKP-223ENST00000629179 MRPL55Q7Z7F7 128 aaKnown RBP8.63□□□□□ -1.03
PNKP-223ENST00000629179 DIRC1Q969H9 104 aa8.63□□□□□ -1.03
PNKP-223ENST00000629179 TP73-AS1Q9UF72 201 aa8.63□□□□□ -1.03
PNKP-223ENST00000629179 ERG28Q9UKR5 140 aa8.63□□□□□ -1.03
PNKP-223ENST00000629179 PLA2G2DQ9UNK4 145 aa8.63□□□□□ -1.03
PNKP-223ENST00000629179 H0Y8G0 127 aa8.62□□□□□ -1.03
PNKP-223ENST00000629179 SMIM6P0DI80 62 aa8.62□□□□□ -1.03
PNKP-223ENST00000629179 LINC00167Q96N53 147 aa8.62□□□□□ -1.03
PNKP-223ENST00000629179 RPL37AP8A6NKH3 93 aa8.61□□□□□ -1.03
PNKP-223ENST00000629179 H0Y9J4 135 aa8.61□□□□□ -1.03
PNKP-223ENST00000629179 LEPROTL1O95214 131 aa8.61□□□□□ -1.03
PNKP-223ENST00000629179 S100A2P29034 98 aa8.61□□□□□ -1.03
PNKP-223ENST00000629179 TNXBP22105 4242 aa8.6□□□□□ -1.03
PNKP-223ENST00000629179 GAGE10A6NGK3 116 aa8.6□□□□□ -1.03
PNKP-223ENST00000629179 HIST1H2BKO60814 126 aa8.6□□□□□ -1.03
PNKP-223ENST00000629179 HIST1H2BJP06899 126 aa8.6□□□□□ -1.03
PNKP-223ENST00000629179 FABP4P15090 132 aa8.6□□□□□ -1.03
PNKP-223ENST00000629179 HIST1H2BOP23527 126 aa8.6□□□□□ -1.03
PNKP-223ENST00000629179 HIST1H2BBP33778 126 aa8.6□□□□□ -1.03
PNKP-223ENST00000629179 HIST1H2BDP58876 126 aa8.6□□□□□ -1.03
PNKP-223ENST00000629179 HIST1H2BCP62807 126 aa8.6□□□□□ -1.03
PNKP-223ENST00000629179 S100A12P80511 92 aa8.6□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 63.9 ms