RNA–Protein interactions for RNA: ENST00000618700.4

UPF3A-211, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2

Gene UPF3A, Length 1,210 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-211ENST00000618700 C9orf163Q8N9P6 203 aa12.76□□□□□ -0.37
UPF3A-211ENST00000618700 PMCHL2Q9BQD1 86 aa12.76□□□□□ -0.37
UPF3A-211ENST00000618700 KRTAP17-1Q9BYP8 105 aa12.76□□□□□ -0.37
UPF3A-211ENST00000618700 TRAV16A0A0A6YYK6 109 aaPredicted RBP12.75□□□□□ -0.37
UPF3A-211ENST00000618700 F8WDY8 70 aa12.75□□□□□ -0.37
UPF3A-211ENST00000618700 DPM2O94777 84 aa12.75□□□□□ -0.37
UPF3A-211ENST00000618700 GCSHP23434 173 aa12.75□□□□□ -0.37
UPF3A-211ENST00000618700 LINC01545Q5VT33 79 aa12.75□□□□□ -0.37
UPF3A-211ENST00000618700 Q8IZM0 81 aa12.75□□□□□ -0.37
UPF3A-211ENST00000618700 KRTDAPP60985 99 aa12.74□□□□□ -0.37
UPF3A-211ENST00000618700 SYCNQ0VAF6 134 aa12.74□□□□□ -0.37
UPF3A-211ENST00000618700 CAMK2N2Q96S95 79 aa12.74□□□□□ -0.37
UPF3A-211ENST00000618700 TMEM223A0PJW6 202 aa12.73□□□□□ -0.37
UPF3A-211ENST00000618700 IGKCP01834 107 aa12.73□□□□□ -0.37
UPF3A-211ENST00000618700 LINC01620Q4KN68 170 aa12.73□□□□□ -0.37
UPF3A-211ENST00000618700 Q6ZRU5 148 aa12.73□□□□□ -0.37
UPF3A-211ENST00000618700 CARD19Q96LW7 228 aa12.73□□□□□ -0.37
UPF3A-211ENST00000618700 TOMM7Q9P0U1 55 aa12.73□□□□□ -0.37
UPF3A-211ENST00000618700 DNAH8Q96JB1 4490 aa12.72□□□□□ -0.37
UPF3A-211ENST00000618700 PRSS2P07478 247 aa12.72□□□□□ -0.37
UPF3A-211ENST00000618700 KRTAP10-1P60331 282 aa12.72□□□□□ -0.37
UPF3A-211ENST00000618700 COX7B2Q8TF08 81 aa12.71□□□□□ -0.37
UPF3A-211ENST00000618700 NDUFA1O15239 70 aa12.7□□□□□ -0.38
UPF3A-211ENST00000618700 UNQ6190/PRO20217Q6UXQ8 127 aa12.7□□□□□ -0.38
UPF3A-211ENST00000618700 TMA7Q9Y2S6 64 aaKnown RBP12.7□□□□□ -0.38
UPF3A-211ENST00000618700 C6orf226Q5I0X4 101 aa12.69□□□□□ -0.38
UPF3A-211ENST00000618700 C10orf25Q5T742 122 aa12.69□□□□□ -0.38
UPF3A-211ENST00000618700 C2orf82Q6UX34 121 aa12.69□□□□□ -0.38
UPF3A-211ENST00000618700 CXCL5P42830 114 aa12.68□□□□□ -0.38
UPF3A-211ENST00000618700 RNF151Q2KHN1 245 aa12.68□□□□□ -0.38
UPF3A-211ENST00000618700 SDIM1Q6ZPB5 146 aa12.68□□□□□ -0.38
UPF3A-211ENST00000618700 CKS1BP61024 79 aa12.67□□□□□ -0.38
UPF3A-211ENST00000618700 C6orf48Q9UBA6 75 aa12.67□□□□□ -0.38
UPF3A-211ENST00000618700 APOBP04114 4563 aaKnown RBP12.66□□□□□ -0.38
UPF3A-211ENST00000618700 C20orf202A1L168 122 aa12.66□□□□□ -0.38
UPF3A-211ENST00000618700 Q6ZSA8 131 aa12.66□□□□□ -0.38
UPF3A-211ENST00000618700 TRBV30A0A0K0K1B3 111 aa12.65□□□□□ -0.38
UPF3A-211ENST00000618700 HERVK_113P61574 105 aa12.63□□□□□ -0.39
UPF3A-211ENST00000618700 FAM30AQ9NZY2 134 aa12.62□□□□□ -0.39
UPF3A-211ENST00000618700 PKIGQ9Y2B9 76 aa12.62□□□□□ -0.39
UPF3A-211ENST00000618700 HERC2O95714 4834 aa12.62□□□□□ -0.39
UPF3A-211ENST00000618700 AKR1D1P51857 326 aa12.61□□□□□ -0.39
UPF3A-211ENST00000618700 TSPEAR-AS2P59090 65 aa12.61□□□□□ -0.39
UPF3A-211ENST00000618700 ZNF625Q96I27 306 aaPredicted RBP12.61□□□□□ -0.39
UPF3A-211ENST00000618700 KIAA1109Q2LD37 5005 aa12.61□□□□□ -0.39
UPF3A-211ENST00000618700 LOC107984640A0A0U1RRK4 108 aa12.6□□□□□ -0.39
UPF3A-211ENST00000618700 E9PLD3 99 aa12.6□□□□□ -0.39
UPF3A-211ENST00000618700 LEPROTO15243 131 aa12.6□□□□□ -0.39
UPF3A-211ENST00000618700 TLX1NBP0CAT3 122 aa12.6□□□□□ -0.39
UPF3A-211ENST00000618700 CIRBPQ14011 172 aaKnown RBP12.6□□□□□ -0.39
UPF3A-211ENST00000618700 PANO1I0J062 215 aa12.59□□□□□ -0.39
UPF3A-211ENST00000618700 C9orf116Q5BN46 136 aaPredicted RBP12.59□□□□□ -0.39
UPF3A-211ENST00000618700 SFTA2Q6UW10 78 aa12.59□□□□□ -0.39
UPF3A-211ENST00000618700 STPG4Q8N801 248 aa12.59□□□□□ -0.39
UPF3A-211ENST00000618700 PLEKHB2Q96CS7 222 aa12.59□□□□□ -0.39
UPF3A-211ENST00000618700 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP12.59□□□□□ -0.39
UPF3A-211ENST00000618700 RYR1P21817 5038 aa12.59□□□□□ -0.39
UPF3A-211ENST00000618700 A0A096LNI7 61 aa12.58□□□□□ -0.4
UPF3A-211ENST00000618700 ATOH7Q8N100 152 aa12.58□□□□□ -0.4
UPF3A-211ENST00000618700 J3QQQ9 107 aa12.57□□□□□ -0.4
UPF3A-211ENST00000618700 CHTF8P0CG12 524 aa12.57□□□□□ -0.4
UPF3A-211ENST00000618700 SPACA4Q8TDM5 124 aa12.57□□□□□ -0.4
UPF3A-211ENST00000618700 NDUFC2-KCTD14E9PQ53 114 aa12.56□□□□□ -0.4
UPF3A-211ENST00000618700 CDK2AP2O75956 126 aa12.56□□□□□ -0.4
UPF3A-211ENST00000618700 PTTG1IPP53801 180 aa12.56□□□□□ -0.4
UPF3A-211ENST00000618700 Q6ZRP5 223 aa12.56□□□□□ -0.4
UPF3A-211ENST00000618700 H3BS24 57 aa12.55□□□□□ -0.4
UPF3A-211ENST00000618700 XGP55808 180 aa12.55□□□□□ -0.4
UPF3A-211ENST00000618700 RPL18AQ02543 176 aaKnown RBP12.55□□□□□ -0.4
UPF3A-211ENST00000618700 NDUFA12Q9UI09 145 aa12.55□□□□□ -0.4
UPF3A-211ENST00000618700 HSPG2P98160 4391 aa12.55□□□□□ -0.4
UPF3A-211ENST00000618700 IGKV2-24A0A0C4DH68 120 aa12.54□□□□□ -0.4
UPF3A-211ENST00000618700 LINC00474Q9P2X8 69 aa12.54□□□□□ -0.4
UPF3A-211ENST00000618700 GAGE2BQ13066 116 aa12.53□□□□□ -0.4
UPF3A-211ENST00000618700 SCXQ7RTU7 201 aa12.53□□□□□ -0.4
UPF3A-211ENST00000618700 IGKV2D-26A0A0A0MRZ7 120 aa12.52□□□□□ -0.41
UPF3A-211ENST00000618700 LGALS3P17931 250 aaKnown RBP12.52□□□□□ -0.41
UPF3A-211ENST00000618700 NMUP48645 174 aa12.52□□□□□ -0.41
UPF3A-211ENST00000618700 HERV-K104P63124 156 aa12.52□□□□□ -0.41
UPF3A-211ENST00000618700 HAMPP81172 84 aa12.52□□□□□ -0.41
UPF3A-211ENST00000618700 ERG28Q9UKR5 140 aa12.52□□□□□ -0.41
UPF3A-211ENST00000618700 MYMXA0A1B0GTQ4 84 aa12.51□□□□□ -0.41
UPF3A-211ENST00000618700 SCGB1D1O95968 90 aa12.51□□□□□ -0.41
UPF3A-211ENST00000618700 ANKRD39Q53RE8 183 aa12.51□□□□□ -0.41
UPF3A-211ENST00000618700 MAJINQ3KP22 176 aa12.5□□□□□ -0.41
UPF3A-211ENST00000618700 CIRBP-AS1Q8TBR5 109 aa12.5□□□□□ -0.41
UPF3A-211ENST00000618700 KRTAP4-8Q9BYQ9 185 aa12.5□□□□□ -0.41
UPF3A-211ENST00000618700 COX17Q14061 63 aa12.49□□□□□ -0.41
UPF3A-211ENST00000618700 GAGE2EQ4V326 116 aa12.49□□□□□ -0.41
UPF3A-211ENST00000618700 GAGE2DQ9UEU5 116 aa12.49□□□□□ -0.41
UPF3A-211ENST00000618700 A0A087WYN8 130 aa12.48□□□□□ -0.41
UPF3A-211ENST00000618700 JOSD1Q15040 202 aaPredicted RBP12.48□□□□□ -0.41
UPF3A-211ENST00000618700 PLAC8Q9NZF1 115 aa12.48□□□□□ -0.41
UPF3A-211ENST00000618700 PFN2P35080 140 aa12.47□□□□□ -0.41
UPF3A-211ENST00000618700 C9orf129Q5T035 196 aaKnown RBP12.47□□□□□ -0.41
UPF3A-211ENST00000618700 EPM2AB3EWF7 344 aa12.46□□□□□ -0.41
UPF3A-211ENST00000618700 TTTY13Q9BZ97 58 aa12.46□□□□□ -0.41
UPF3A-211ENST00000618700 A0A1W2PNN7 141 aa12.44□□□□□ -0.42
UPF3A-211ENST00000618700 HSBP1L1C9JCN9 74 aa12.44□□□□□ -0.42
UPF3A-211ENST00000618700 MEIG1Q5JSS6 88 aa12.44□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 130.2 ms