RNA–Protein interactions for RNA: ENST00000616154.1

CDX1-202, Transcript of caudal type homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CDX1, Length 1,343 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1-202ENST00000616154 C2orf88Q9BSF0 95 aa11.94□□□□□ -0.5
CDX1-202ENST00000616154 MAP1LC3CQ9BXW4 147 aa11.94□□□□□ -0.5
CDX1-202ENST00000616154 C3orf79P0CE67 100 aa11.93□□□□□ -0.5
CDX1-202ENST00000616154 SYS1-DBNDD2H3BUS1 97 aa11.92□□□□□ -0.5
CDX1-202ENST00000616154 ODF1Q14990 250 aa11.92□□□□□ -0.5
CDX1-202ENST00000616154 TRAV13-1A0A0B4J241 112 aa11.91□□□□□ -0.5
CDX1-202ENST00000616154 LINC00242Q5T6M2 205 aa11.91□□□□□ -0.5
CDX1-202ENST00000616154 IGLV4-69A0A075B6H9 119 aa11.9□□□□□ -0.5
CDX1-202ENST00000616154 MAJINQ3KP22 176 aa11.9□□□□□ -0.5
CDX1-202ENST00000616154 PET117Q6UWS5 81 aa11.9□□□□□ -0.5
CDX1-202ENST00000616154 IGKV2-24A0A0C4DH68 120 aa11.89□□□□□ -0.51
CDX1-202ENST00000616154 COX7A2LO14548 114 aa11.89□□□□□ -0.51
CDX1-202ENST00000616154 IGLC3P0DOY3 106 aa11.89□□□□□ -0.51
CDX1-202ENST00000616154 LINC01545Q5VT33 79 aa11.89□□□□□ -0.51
CDX1-202ENST00000616154 IGLV5-45A0A087WSX0 123 aa11.88□□□□□ -0.51
CDX1-202ENST00000616154 IGHV3OR16-9A0A0B4J2B5 98 aa11.88□□□□□ -0.51
CDX1-202ENST00000616154 A0A0J9YXV3 536 aa11.88□□□□□ -0.51
CDX1-202ENST00000616154 TINCRA0A1B0GVN0 87 aa11.88□□□□□ -0.51
CDX1-202ENST00000616154 F8VRH5 84 aa11.88□□□□□ -0.51
CDX1-202ENST00000616154 SEC11AP67812 179 aa11.88□□□□□ -0.51
CDX1-202ENST00000616154 PKIGQ9Y2B9 76 aa11.88□□□□□ -0.51
CDX1-202ENST00000616154 PRR3P79522 188 aaKnown RBP11.87□□□□□ -0.51
CDX1-202ENST00000616154 STPG4Q8N801 248 aa11.87□□□□□ -0.51
CDX1-202ENST00000616154 CARD19Q96LW7 228 aa11.87□□□□□ -0.51
CDX1-202ENST00000616154 MRPL35Q9NZE8 188 aaKnown RBP11.87□□□□□ -0.51
CDX1-202ENST00000616154 CHTOPQ9Y3Y2 248 aaKnown RBP11.87□□□□□ -0.51
CDX1-202ENST00000616154 ZNF561-AS1K7EIQ3 104 aa11.86□□□□□ -0.51
CDX1-202ENST00000616154 KRTDAPP60985 99 aa11.86□□□□□ -0.51
CDX1-202ENST00000616154 A0A096LNI7 61 aa11.86□□□□□ -0.51
CDX1-202ENST00000616154 HERVK_113P63121 156 aa11.86□□□□□ -0.51
CDX1-202ENST00000616154 SYCNQ0VAF6 134 aa11.86□□□□□ -0.51
CDX1-202ENST00000616154 OR10D4PQ8NGN7 298 aa11.86□□□□□ -0.51
CDX1-202ENST00000616154 LINC00526Q96FQ7 95 aa11.86□□□□□ -0.51
CDX1-202ENST00000616154 C11orf86A6NJI1 115 aa11.85□□□□□ -0.51
CDX1-202ENST00000616154 MALP21145 153 aa11.85□□□□□ -0.51
CDX1-202ENST00000616154 C2orf48Q96LS8 159 aa11.85□□□□□ -0.51
CDX1-202ENST00000616154 LINC01600Q96MT4 127 aa11.85□□□□□ -0.51
CDX1-202ENST00000616154 LINC00474Q9P2X8 69 aa11.85□□□□□ -0.51
CDX1-202ENST00000616154 H0Y8G0 127 aa11.84□□□□□ -0.51
CDX1-202ENST00000616154 LRP2P98164 4655 aa11.84□□□□□ -0.51
CDX1-202ENST00000616154 LINC01561Q8N1V8 128 aa11.84□□□□□ -0.51
CDX1-202ENST00000616154 A0A087WZ39 114 aa11.83□□□□□ -0.52
CDX1-202ENST00000616154 APOMO95445 188 aa11.83□□□□□ -0.52
CDX1-202ENST00000616154 PLNP26678 52 aa11.83□□□□□ -0.52
CDX1-202ENST00000616154 C5orf38Q86SI9 138 aa11.83□□□□□ -0.52
CDX1-202ENST00000616154 DPM2O94777 84 aa11.82□□□□□ -0.52
CDX1-202ENST00000616154 ZNF22P17026 224 aaPredicted RBP11.82□□□□□ -0.52
CDX1-202ENST00000616154 GEMIN7Q9H840 131 aaKnown RBP11.82□□□□□ -0.52
CDX1-202ENST00000616154 CDKN2A-AS1Q9UH64 79 aa11.82□□□□□ -0.52
CDX1-202ENST00000616154 PMCHL2Q9BQD1 86 aa11.81□□□□□ -0.52
CDX1-202ENST00000616154 C20orf202A1L168 122 aa11.8□□□□□ -0.52
CDX1-202ENST00000616154 F8WDY8 70 aa11.8□□□□□ -0.52
CDX1-202ENST00000616154 IGKCP01834 107 aa11.8□□□□□ -0.52
CDX1-202ENST00000616154 AKR1D1P51857 326 aa11.8□□□□□ -0.52
CDX1-202ENST00000616154 RNF151Q2KHN1 245 aa11.79□□□□□ -0.52
CDX1-202ENST00000616154 LINC00469Q8N7U9 141 aa11.79□□□□□ -0.52
CDX1-202ENST00000616154 PTTG1IPP53801 180 aa11.78□□□□□ -0.52
CDX1-202ENST00000616154 SPAG11BQ08648 103 aa11.78□□□□□ -0.52
CDX1-202ENST00000616154 JOSD1Q15040 202 aaPredicted RBP11.78□□□□□ -0.52
CDX1-202ENST00000616154 SPINK6Q6UWN8 80 aa11.78□□□□□ -0.52
CDX1-202ENST00000616154 CAMK2N2Q96S95 79 aa11.78□□□□□ -0.52
CDX1-202ENST00000616154 LOC107984640A0A0U1RRK4 108 aa11.77□□□□□ -0.53
CDX1-202ENST00000616154 IGLV5-39A0A0G2JS06 123 aa11.76□□□□□ -0.53
CDX1-202ENST00000616154 LOC105371267A0A1B0GV96 52 aa11.76□□□□□ -0.53
CDX1-202ENST00000616154 SMIM1B2RUZ4 78 aa11.76□□□□□ -0.53
CDX1-202ENST00000616154 H3BRM9 83 aa11.76□□□□□ -0.53
CDX1-202ENST00000616154 TMEM223A0PJW6 202 aa11.75□□□□□ -0.53
CDX1-202ENST00000616154 TMEM170BQ5T4T1 132 aa11.75□□□□□ -0.53
CDX1-202ENST00000616154 REG3GQ6UW15 175 aa11.75□□□□□ -0.53
CDX1-202ENST00000616154 Q6ZRP5 223 aa11.75□□□□□ -0.53
CDX1-202ENST00000616154 ORAOV1Q8WV07 137 aa11.75□□□□□ -0.53
CDX1-202ENST00000616154 KRTAP10-8P60410 259 aa11.74□□□□□ -0.53
CDX1-202ENST00000616154 SRSF9Q13242 221 aaKnown RBP eCLIP11.74□□□□□ -0.53
CDX1-202ENST00000616154 KIAA0087Q14695 138 aa11.73□□□□□ -0.53
CDX1-202ENST00000616154 PYY3Q5JQD4 70 aa11.73□□□□□ -0.53
CDX1-202ENST00000616154 SCGB1D1O95968 90 aa11.72□□□□□ -0.53
CDX1-202ENST00000616154 SPINK8P0C7L1 97 aa11.71□□□□□ -0.53
CDX1-202ENST00000616154 TLX1NBP0CAT3 122 aa11.71□□□□□ -0.53
CDX1-202ENST00000616154 RNF213Q63HN8 5207 aa11.71□□□□□ -0.54
CDX1-202ENST00000616154 NDUFA1O15239 70 aa11.7□□□□□ -0.54
CDX1-202ENST00000616154 GAGE2BQ13066 116 aa11.7□□□□□ -0.54
CDX1-202ENST00000616154 Q8IZM0 81 aa11.69□□□□□ -0.54
CDX1-202ENST00000616154 ATOH7Q8N100 152 aa11.69□□□□□ -0.54
CDX1-202ENST00000616154 E9PLD3 99 aa11.68□□□□□ -0.54
CDX1-202ENST00000616154 C10orf25Q5T742 122 aa11.68□□□□□ -0.54
CDX1-202ENST00000616154 C6orf48Q9UBA6 75 aa11.68□□□□□ -0.54
CDX1-202ENST00000616154 A0A1W2PNN7 141 aa11.67□□□□□ -0.54
CDX1-202ENST00000616154 HERVK_113P61574 105 aa11.67□□□□□ -0.54
CDX1-202ENST00000616154 RPL18AQ02543 176 aaKnown RBP11.66□□□□□ -0.54
CDX1-202ENST00000616154 UNQ6190/PRO20217Q6UXQ8 127 aa11.66□□□□□ -0.54
CDX1-202ENST00000616154 LEPROTO15243 131 aa11.65□□□□□ -0.54
CDX1-202ENST00000616154 C9orf116Q5BN46 136 aaPredicted RBP11.65□□□□□ -0.54
CDX1-202ENST00000616154 COX7B2Q8TF08 81 aa11.65□□□□□ -0.54
CDX1-202ENST00000616154 TRBV30A0A0K0K1B3 111 aa11.64□□□□□ -0.55
CDX1-202ENST00000616154 ANKRD39Q53RE8 183 aa11.64□□□□□ -0.55
CDX1-202ENST00000616154 PLEKHB2Q96CS7 222 aa11.64□□□□□ -0.55
CDX1-202ENST00000616154 TSPEAR-AS2P59090 65 aa11.63□□□□□ -0.55
CDX1-202ENST00000616154 IGKV2D-26A0A0A0MRZ7 120 aa11.62□□□□□ -0.55
CDX1-202ENST00000616154 CXCL5P42830 114 aa11.62□□□□□ -0.55
CDX1-202ENST00000616154 PSORS1C2Q9UIG4 136 aa11.62□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms