RNA–Protein interactions for RNA: ENST00000613670.4

LIG1-221, Transcript of DNA ligase 1, humanhuman

TSL 1 (best) BASIC

Gene LIG1, Length 3,949 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-221ENST00000613670 FLNAP21333 2647 aaKnown RBP8.91□□□□□ -0.98
LIG1-221ENST00000613670 RPL18AQ02543 176 aaKnown RBP8.91□□□□□ -0.98
LIG1-221ENST00000613670 PPDPFQ9H3Y8 114 aa8.91□□□□□ -0.98
LIG1-221ENST00000613670 DSCR8Q96T75 97 aa8.91□□□□□ -0.98
LIG1-221ENST00000613670 JMJD7-PLA2G4BH0Y9G9 81 aa8.9□□□□□ -0.98
LIG1-221ENST00000613670 C9orf116Q5BN46 136 aaPredicted RBP8.9□□□□□ -0.98
LIG1-221ENST00000613670 DEFB135Q30KP9 77 aa8.9□□□□□ -0.98
LIG1-221ENST00000613670 C20orf197Q8N268 126 aa8.9□□□□□ -0.98
LIG1-221ENST00000613670 BBC3Q96PG8 261 aaPredicted RBP8.9□□□□□ -0.98
LIG1-221ENST00000613670 TEX15Q9BXT5 2789 aa8.9□□□□□ -0.98
LIG1-221ENST00000613670 TMEM256-PLSCR3K7ERE1 68 aa8.89□□□□□ -0.99
LIG1-221ENST00000613670 FAM110AQ9BQ89 295 aa8.89□□□□□ -0.99
LIG1-221ENST00000613670 PRO0255Q9UI72 69 aa8.89□□□□□ -0.99
LIG1-221ENST00000613670 CHCHD10Q8WYQ3 142 aaPredicted RBP8.88□□□□□ -0.99
LIG1-221ENST00000613670 RBM3P98179 157 aaKnown RBP8.88□□□□□ -0.99
LIG1-221ENST00000613670 SPAG11BQ08648 103 aa8.88□□□□□ -0.99
LIG1-221ENST00000613670 KLK12Q9UKR0 248 aa8.88□□□□□ -0.99
LIG1-221ENST00000613670 NBEAL2Q6ZNJ1 2754 aa8.88□□□□□ -0.99
LIG1-221ENST00000613670 A0A087WZ39 114 aa8.87□□□□□ -0.99
LIG1-221ENST00000613670 LINC00482Q8N8I6 264 aa8.87□□□□□ -0.99
LIG1-221ENST00000613670 IGKV2-28A0A075B6P5 120 aa8.87□□□□□ -0.99
LIG1-221ENST00000613670 IGKV2D-28P01615 120 aa8.87□□□□□ -0.99
LIG1-221ENST00000613670 SERP2Q8N6R1 65 aa8.87□□□□□ -0.99
LIG1-221ENST00000613670 GCN1Q92616 2671 aaKnown RBP8.87□□□□□ -0.99
LIG1-221ENST00000613670 DEFB121Q5J5C9 76 aa8.86□□□□□ -0.99
LIG1-221ENST00000613670 IGHV3OR16-9A0A0B4J2B5 98 aa8.86□□□□□ -0.99
LIG1-221ENST00000613670 LINC01006Q8NI28 216 aa8.86□□□□□ -0.99
LIG1-221ENST00000613670 XAGE1AQ9HD64 81 aa8.86□□□□□ -0.99
LIG1-221ENST00000613670 REG3AQ06141 175 aa8.86□□□□□ -0.99
LIG1-221ENST00000613670 FHL2Q14192 279 aa8.86□□□□□ -0.99
LIG1-221ENST00000613670 CRYBG3Q68DQ2 2970 aa8.86□□□□□ -0.99
LIG1-221ENST00000613670 SCXQ7RTU7 201 aa8.86□□□□□ -0.99
LIG1-221ENST00000613670 UPK3BQ9BT76 320 aa8.86□□□□□ -0.99
LIG1-221ENST00000613670 A8MTW9 85 aa8.86□□□□□ -0.99
LIG1-221ENST00000613670 ZNF561-AS1K7EIQ3 104 aa8.85□□□□□ -0.99
LIG1-221ENST00000613670 HILS1P60008 231 aa8.85□□□□□ -0.99
LIG1-221ENST00000613670 Q6JHZ5 121 aa8.84□□□□□ -0.99
LIG1-221ENST00000613670 ITPR3Q14573 2671 aa8.84□□□□□ -0.99
LIG1-221ENST00000613670 C9orf129Q5T035 196 aaKnown RBP8.83□□□□□ -1
LIG1-221ENST00000613670 FAM19A1Q7Z5A9 133 aa8.83□□□□□ -1
LIG1-221ENST00000613670 CFAP46Q8IYW2 2715 aa8.82□□□□□ -1
LIG1-221ENST00000613670 Q6ZQY7 126 aa8.82□□□□□ -1
LIG1-221ENST00000613670 CCKP06307 115 aa8.81□□□□□ -1
LIG1-221ENST00000613670 Q8N814 137 aa8.81□□□□□ -1
LIG1-221ENST00000613670 DEFB105AQ8NG35 78 aa8.81□□□□□ -1
LIG1-221ENST00000613670 CUBNO60494 3623 aa8.81□□□□□ -1
LIG1-221ENST00000613670 FAM19A5Q7Z5A7 132 aaPredicted RBP8.81□□□□□ -1
LIG1-221ENST00000613670 IGSF10Q6WRI0 2623 aa8.8□□□□□ -1
LIG1-221ENST00000613670 HIGD2BQ4VC39 106 aa8.8□□□□□ -1
LIG1-221ENST00000613670 UNQ6190/PRO20217Q6UXQ8 127 aa8.8□□□□□ -1
LIG1-221ENST00000613670 Q8IZM0 81 aa8.8□□□□□ -1
LIG1-221ENST00000613670 F8P00451 2351 aa8.8□□□□□ -1
LIG1-221ENST00000613670 CD164L2Q6UWJ8 174 aa8.79□□□□□ -1
LIG1-221ENST00000613670 CAMK2N2Q96S95 79 aa8.79□□□□□ -1
LIG1-221ENST00000613670 UTP20O75691 2785 aaKnown RBP8.78□□□□□ -1
LIG1-221ENST00000613670 FBN2P35556 2912 aa8.78□□□□□ -1
LIG1-221ENST00000613670 IGLV1-51P01701 117 aa8.78□□□□□ -1
LIG1-221ENST00000613670 C6orf223Q8N319 242 aa8.78□□□□□ -1
LIG1-221ENST00000613670 Q8N3U1 123 aa8.78□□□□□ -1
LIG1-221ENST00000613670 KIR2DL5BQ8NHK3 375 aa8.78□□□□□ -1
LIG1-221ENST00000613670 SNURFQ9Y675 71 aa8.78□□□□□ -1
LIG1-221ENST00000613670 DIRC1Q969H9 104 aa8.77□□□□□ -1
LIG1-221ENST00000613670 TMEM258P61165 79 aa8.77□□□□□ -1.01
LIG1-221ENST00000613670 NF1P21359 2839 aa8.77□□□□□ -1.01
LIG1-221ENST00000613670 APOC4P55056 127 aa8.76□□□□□ -1.01
LIG1-221ENST00000613670 IGHV4-28A0A0C4DH34 117 aa8.76□□□□□ -1.01
LIG1-221ENST00000613670 LINC01600Q96MT4 127 aa8.75□□□□□ -1.01
LIG1-221ENST00000613670 FLNBO75369 2602 aaKnown RBP8.75□□□□□ -1.01
LIG1-221ENST00000613670 CYSRT1A8MQ03 144 aa8.75□□□□□ -1.01
LIG1-221ENST00000613670 SPART-AS1P0CW21 52 aa8.75□□□□□ -1.01
LIG1-221ENST00000613670 ATP5EP2Q5VTU8 51 aa8.74□□□□□ -1.01
LIG1-221ENST00000613670 FSHBP01225 129 aa8.73□□□□□ -1.01
LIG1-221ENST00000613670 A0A096LNT2 108 aa8.73□□□□□ -1.01
LIG1-221ENST00000613670 CRYGAP11844 174 aa8.73□□□□□ -1.01
LIG1-221ENST00000613670 HECTD1Q9ULT8 2610 aa8.73□□□□□ -1.01
LIG1-221ENST00000613670 IGKV2D-24A0A075B6R9 120 aa8.73□□□□□ -1.01
LIG1-221ENST00000613670 SMIM9A6NGZ8 99 aa8.73□□□□□ -1.01
LIG1-221ENST00000613670 COX7BP24311 80 aa8.73□□□□□ -1.01
LIG1-221ENST00000613670 FAM236DA0A1B0GTK5 79 aa8.72□□□□□ -1.01
LIG1-221ENST00000613670 GIG44P09565 113 aaPredicted RBP8.72□□□□□ -1.01
LIG1-221ENST00000613670 FAM236CP0DP71 79 aa8.72□□□□□ -1.01
LIG1-221ENST00000613670 HRCT1Q6UXD1 115 aa8.72□□□□□ -1.01
LIG1-221ENST00000613670 ZNF843Q8N446 348 aa8.72□□□□□ -1.01
LIG1-221ENST00000613670 NKAPP1Q8N9T2 125 aa8.72□□□□□ -1.01
LIG1-221ENST00000613670 C5orf47Q569G3 176 aa8.72□□□□□ -1.01
LIG1-221ENST00000613670 ATRQ13535 2644 aa8.71□□□□□ -1.01
LIG1-221ENST00000613670 LINC01561Q8N1V8 128 aa8.71□□□□□ -1.01
LIG1-221ENST00000613670 FAM19A3Q7Z5A8 133 aa8.71□□□□□ -1.02
LIG1-221ENST00000613670 TRBV10-3A0A0K0K1G6 114 aa8.71□□□□□ -1.02
LIG1-221ENST00000613670 SMR3AQ99954 134 aa8.71□□□□□ -1.02
LIG1-221ENST00000613670 NREPQ16612 68 aa8.7□□□□□ -1.02
LIG1-221ENST00000613670 LYRM9A8MSI8 78 aa8.7□□□□□ -1.02
LIG1-221ENST00000613670 C10orf25Q5T742 122 aa8.7□□□□□ -1.02
LIG1-221ENST00000613670 A0A1B0GUV1 79 aa8.7□□□□□ -1.02
LIG1-221ENST00000613670 PLAC8L1A1L4L8 177 aa8.7□□□□□ -1.02
LIG1-221ENST00000613670 C9orf66Q5T8R8 295 aa8.7□□□□□ -1.02
LIG1-221ENST00000613670 MXRA5Q9NR99 2828 aa8.69□□□□□ -1.02
LIG1-221ENST00000613670 COX17Q14061 63 aa8.69□□□□□ -1.02
LIG1-221ENST00000613670 IL17DQ8TAD2 202 aa8.69□□□□□ -1.02
LIG1-221ENST00000613670 LINC00575Q6W349 94 aa8.68□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 93.7 ms