RNA–Protein interactions for RNA: ENST00000611481.1

LINC00540-201, long intergenic non-protein coding RNA 540, humanhuman

TSL 4

Gene LINC00540, Length 588 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-201ENST00000611481 SNCAP37840 140 aa2.41□□□□□ -2.02
LINC00540-201ENST00000611481 UBE2BP63146 152 aa2.41□□□□□ -2.02
LINC00540-201ENST00000611481 SUPT4H1P63272 117 aaKnown RBP2.41□□□□□ -2.02
LINC00540-201ENST00000611481 ERHP84090 104 aaKnown RBP2.41□□□□□ -2.02
LINC00540-201ENST00000611481 SLC38A11Q08AI6 406 aa2.41□□□□□ -2.02
LINC00540-201ENST00000611481 MIAQ16674 131 aa2.41□□□□□ -2.02
LINC00540-201ENST00000611481 MIR17HGQ75NE6 70 aa2.41□□□□□ -2.02
LINC00540-201ENST00000611481 HIST3H2BBQ8N257 126 aa2.41□□□□□ -2.02
LINC00540-201ENST00000611481 SCGB3A1Q96QR1 104 aa2.41□□□□□ -2.02
LINC00540-201ENST00000611481 FKBP11Q9NYL4 201 aa2.41□□□□□ -2.02
LINC00540-201ENST00000611481 TRBV7-6A0A0J9YX20 115 aa2.4□□□□□ -2.03
LINC00540-201ENST00000611481 MEIS3P1A6NDR6 274 aa2.4□□□□□ -2.03
LINC00540-201ENST00000611481 J3QQQ9 107 aa2.4□□□□□ -2.03
LINC00540-201ENST00000611481 J3QRE1 110 aa2.4□□□□□ -2.03
LINC00540-201ENST00000611481 CORTO00230 105 aa2.4□□□□□ -2.03
LINC00540-201ENST00000611481 CST7O76096 145 aa2.4□□□□□ -2.03
LINC00540-201ENST00000611481 XCL1P47992 114 aa2.4□□□□□ -2.03
LINC00540-201ENST00000611481 CATR1Q13166 79 aa2.4□□□□□ -2.03
LINC00540-201ENST00000611481 DNLZQ5SXM8 178 aa2.4□□□□□ -2.03
LINC00540-201ENST00000611481 C12orf73Q69YU5 71 aa2.4□□□□□ -2.03
LINC00540-201ENST00000611481 ACBD7Q8N6N7 88 aa2.4□□□□□ -2.03
LINC00540-201ENST00000611481 DIRC1Q969H9 104 aa2.4□□□□□ -2.03
LINC00540-201ENST00000611481 HIST1H2BLQ99880 126 aa2.4□□□□□ -2.03
LINC00540-201ENST00000611481 SMIM3Q9BZL3 60 aa2.4□□□□□ -2.03
LINC00540-201ENST00000611481 LPAR5Q9H1C0 372 aa2.4□□□□□ -2.03
LINC00540-201ENST00000611481 OTORQ9NRC9 128 aa2.4□□□□□ -2.03
LINC00540-201ENST00000611481 OSTCQ9NRP0 149 aa2.4□□□□□ -2.03
LINC00540-201ENST00000611481 TRAV16A0A0A6YYK6 109 aaPredicted RBP2.39□□□□□ -2.03
LINC00540-201ENST00000611481 C7orf66A4D0T2 115 aa2.39□□□□□ -2.03
LINC00540-201ENST00000611481 GNGT2O14610 69 aa2.39□□□□□ -2.03
LINC00540-201ENST00000611481 SDC2P34741 201 aa2.39□□□□□ -2.03
LINC00540-201ENST00000611481 NDUFA6P56556 154 aa2.39□□□□□ -2.03
LINC00540-201ENST00000611481 COX6A2Q02221 97 aa2.39□□□□□ -2.03
LINC00540-201ENST00000611481 SS18Q15532 418 aa2.39□□□□□ -2.03
LINC00540-201ENST00000611481 MSMO1Q15800 293 aa2.39□□□□□ -2.03
LINC00540-201ENST00000611481 LINC00483Q53H64 154 aa2.39□□□□□ -2.03
LINC00540-201ENST00000611481 C2orf83Q53S99 150 aa2.39□□□□□ -2.03
LINC00540-201ENST00000611481 XAF1Q6GPH4 301 aa2.39□□□□□ -2.03
LINC00540-201ENST00000611481 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa2.39□□□□□ -2.03
LINC00540-201ENST00000611481 C2orf91Q6ZV80 131 aa2.39□□□□□ -2.03
LINC00540-201ENST00000611481 OR10P1Q8NGE3 313 aa2.39□□□□□ -2.03
LINC00540-201ENST00000611481 ZNF471Q9BX82 626 aaPredicted RBP2.39□□□□□ -2.03
LINC00540-201ENST00000611481 NAT8BQ9UHF3 227 aa2.39□□□□□ -2.03
LINC00540-201ENST00000611481 MUC19Q7Z5P9 8384 aa2.38□□□□□ -2.03
LINC00540-201ENST00000611481 IGHV1-58A0A0C4DH39 117 aa2.38□□□□□ -2.03
LINC00540-201ENST00000611481 LOC107984640A0A0U1RRK4 108 aa2.38□□□□□ -2.03
LINC00540-201ENST00000611481 MT-ND6P03923 174 aa2.38□□□□□ -2.03
LINC00540-201ENST00000611481 RNASE2P10153 161 aaKnown RBP2.38□□□□□ -2.03
LINC00540-201ENST00000611481 S100PP25815 95 aa2.38□□□□□ -2.03
LINC00540-201ENST00000611481 RNASE4P34096 147 aaKnown RBP2.38□□□□□ -2.03
LINC00540-201ENST00000611481 RRAS2P62070 204 aaPredicted RBP2.38□□□□□ -2.03
LINC00540-201ENST00000611481 NCS1P62166 190 aa2.38□□□□□ -2.03
LINC00540-201ENST00000611481 QRFPP83859 136 aa2.38□□□□□ -2.03
LINC00540-201ENST00000611481 Q0VG73 95 aa2.38□□□□□ -2.03
LINC00540-201ENST00000611481 LGALSLQ3ZCW2 172 aaPredicted RBP2.38□□□□□ -2.03
LINC00540-201ENST00000611481 C1orf137Q5JT78 98 aa2.38□□□□□ -2.03
LINC00540-201ENST00000611481 Q5XG85 94 aa2.38□□□□□ -2.03
LINC00540-201ENST00000611481 BPIFA4PQ86YQ2 179 aa2.38□□□□□ -2.03
LINC00540-201ENST00000611481 PRADC1Q9BSG0 188 aa2.38□□□□□ -2.03
LINC00540-201ENST00000611481 ERG28Q9UKR5 140 aa2.38□□□□□ -2.03
LINC00540-201ENST00000611481 EPDR1Q9UM22 224 aa2.38□□□□□ -2.03
LINC00540-201ENST00000611481 FLGP20930 4061 aaPredicted RBP2.38□□□□□ -2.03
LINC00540-201ENST00000611481 PNMA8CA0A1B0GUJ8 204 aa2.37□□□□□ -2.03
LINC00540-201ENST00000611481 FAM25AB3EWG3 89 aa2.37□□□□□ -2.03
LINC00540-201ENST00000611481 FAM25CB3EWG5 89 aa2.37□□□□□ -2.03
LINC00540-201ENST00000611481 FAM25GB3EWG6 89 aa2.37□□□□□ -2.03
LINC00540-201ENST00000611481 H3BPC8 53 aa2.37□□□□□ -2.03
LINC00540-201ENST00000611481 FABP2P12104 132 aa2.37□□□□□ -2.03
LINC00540-201ENST00000611481 RPL35P42766 123 aaKnown RBP2.37□□□□□ -2.03
LINC00540-201ENST00000611481 AQP4P55087 323 aa2.37□□□□□ -2.03
LINC00540-201ENST00000611481 KRTAP19-6Q3LI70 58 aa2.37□□□□□ -2.03
LINC00540-201ENST00000611481 FAM229BQ4G0N7 80 aa2.37□□□□□ -2.03
LINC00540-201ENST00000611481 GGACTQ9BVM4 153 aa2.37□□□□□ -2.03
LINC00540-201ENST00000611481 OR5AC2Q9NZP5 309 aa2.37□□□□□ -2.03
LINC00540-201ENST00000611481 NAT8Q9UHE5 227 aa2.37□□□□□ -2.03
LINC00540-201ENST00000611481 A0A1B0GU33 70 aa2.36□□□□□ -2.03
LINC00540-201ENST00000611481 CRYM-AS1A6NIL9 109 aa2.36□□□□□ -2.03
LINC00540-201ENST00000611481 J3QR89 54 aa2.36□□□□□ -2.03
LINC00540-201ENST00000611481 K7ERU9 68 aa2.36□□□□□ -2.03
LINC00540-201ENST00000611481 HIST1H2BKO60814 126 aa2.36□□□□□ -2.03
LINC00540-201ENST00000611481 PGLYRP1O75594 196 aaPredicted RBP2.36□□□□□ -2.03
LINC00540-201ENST00000611481 TCL1BO95988 128 aa2.36□□□□□ -2.03
LINC00540-201ENST00000611481 CRPP02741 224 aa2.36□□□□□ -2.03
LINC00540-201ENST00000611481 HIST1H2BJP06899 126 aa2.36□□□□□ -2.03
LINC00540-201ENST00000611481 CXCL1P09341 107 aa2.36□□□□□ -2.03
LINC00540-201ENST00000611481 GZMBP10144 247 aa2.36□□□□□ -2.03
LINC00540-201ENST00000611481 TMBIM6P55061 237 aa2.36□□□□□ -2.03
LINC00540-201ENST00000611481 HBBP68871 147 aa2.36□□□□□ -2.03
LINC00540-201ENST00000611481 ELOBQ15370 118 aa2.36□□□□□ -2.03
LINC00540-201ENST00000611481 PHF5AQ7RTV0 110 aaKnown RBP2.36□□□□□ -2.03
LINC00540-201ENST00000611481 LINC00305Q7Z4B0 112 aa2.36□□□□□ -2.03
LINC00540-201ENST00000611481 ZNF431Q8TF32 576 aaPredicted RBP2.36□□□□□ -2.03
LINC00540-201ENST00000611481 AP1S3Q96PC3 154 aa2.36□□□□□ -2.03
LINC00540-201ENST00000611481 IMMP2LQ96T52 175 aa2.36□□□□□ -2.03
LINC00540-201ENST00000611481 TXNL4BQ9NX01 149 aaKnown RBP2.36□□□□□ -2.03
LINC00540-201ENST00000611481 A0A096LNI7 61 aa2.35□□□□□ -2.03
LINC00540-201ENST00000611481 C7orf71A4D174 169 aa2.35□□□□□ -2.03
LINC00540-201ENST00000611481 H3BT86 120 aa2.35□□□□□ -2.03
LINC00540-201ENST00000611481 SLC25A4P12235 298 aa2.35□□□□□ -2.03
LINC00540-201ENST00000611481 RPL28P46779 137 aaKnown RBP2.35□□□□□ -2.03
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms