RNA–Protein interactions for RNA: ENST00000600026.5

LTBP4-227, Transcript of latent transforming growth factor beta binding protein 4, human

TSL 3

Gene LTBP4, Length 723 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
LTBP4-227	ENST00000600026	LRP1B	Q9NZR2	4599 aa		14.34	□□□□□ -0.11
LTBP4-227	ENST00000600026		E9PLD3	99 aa		14.34	□□□□□ -0.11
LTBP4-227	ENST00000600026	CDPF1	Q6NVV7	123 aa		14.34	□□□□□ -0.11
LTBP4-227	ENST00000600026	C2orf48	Q96LS8	159 aa		14.34	□□□□□ -0.11
LTBP4-227	ENST00000600026	PGPEP1	Q9NXJ5	209 aa		14.34	□□□□□ -0.11
LTBP4-227	ENST00000600026		F8WDY8	70 aa		14.33	□□□□□ -0.12
LTBP4-227	ENST00000600026	KIAA0087	Q14695	138 aa		14.33	□□□□□ -0.12
LTBP4-227	ENST00000600026	IGLV5-52	A0A0A0MRZ9	124 aa		14.32	□□□□□ -0.12
LTBP4-227	ENST00000600026	C16orf90	A8MZG2	172 aa		14.32	□□□□□ -0.12
LTBP4-227	ENST00000600026	CXCL5	P42830	114 aa		14.32	□□□□□ -0.12
LTBP4-227	ENST00000600026	CKS1B	P61024	79 aa		14.32	□□□□□ -0.12
LTBP4-227	ENST00000600026	LINC00526	Q96FQ7	95 aa		14.32	□□□□□ -0.12
LTBP4-227	ENST00000600026	CAMK2N2	Q96S95	79 aa		14.31	□□□□□ -0.12
LTBP4-227	ENST00000600026		J3QQQ9	107 aa		14.3	□□□□□ -0.12
LTBP4-227	ENST00000600026	NDUFA1	O15239	70 aa		14.3	□□□□□ -0.12
LTBP4-227	ENST00000600026	LGALS3	P17931	250 aa	Known RBP	14.3	□□□□□ -0.12
LTBP4-227	ENST00000600026	MAJIN	Q3KP22	176 aa		14.29	□□□□□ -0.12
LTBP4-227	ENST00000600026	ANKRD39	Q53RE8	183 aa		14.29	□□□□□ -0.12
LTBP4-227	ENST00000600026	VAMP8	Q9BV40	100 aa		14.29	□□□□□ -0.12
LTBP4-227	ENST00000600026	ABCA13	Q86UQ4	5058 aa		14.29	□□□□□ -0.12
LTBP4-227	ENST00000600026	DNAH8	Q96JB1	4490 aa		14.29	□□□□□ -0.12
LTBP4-227	ENST00000600026	SYCN	Q0VAF6	134 aa		14.28	□□□□□ -0.12
LTBP4-227	ENST00000600026	SFTA2	Q6UW10	78 aa		14.28	□□□□□ -0.12
LTBP4-227	ENST00000600026	TRAV16	A0A0A6YYK6	109 aa	Predicted RBP	14.27	□□□□□ -0.13
LTBP4-227	ENST00000600026	NMU	P48645	174 aa		14.26	□□□□□ -0.13
LTBP4-227	ENST00000600026	C2orf82	Q6UX34	121 aa		14.26	□□□□□ -0.13
LTBP4-227	ENST00000600026	CARD19	Q96LW7	228 aa		14.26	□□□□□ -0.13
LTBP4-227	ENST00000600026	IGKV2D-26	A0A0A0MRZ7	120 aa		14.25	□□□□□ -0.13
LTBP4-227	ENST00000600026	TSPEAR-AS2	P59090	65 aa		14.25	□□□□□ -0.13
LTBP4-227	ENST00000600026	CNBP	P62633	177 aa	Known RBP	14.25	□□□□□ -0.13
LTBP4-227	ENST00000600026	UNQ6190/PRO20217	Q6UXQ8	127 aa		14.25	□□□□□ -0.13
LTBP4-227	ENST00000600026	NDUFA12	Q9UI09	145 aa		14.25	□□□□□ -0.13
LTBP4-227	ENST00000600026	MYMX	A0A1B0GTQ4	84 aa		14.24	□□□□□ -0.13
LTBP4-227	ENST00000600026	SMIM6	P0DI80	62 aa		14.24	□□□□□ -0.13
LTBP4-227	ENST00000600026	GCSH	P23434	173 aa		14.24	□□□□□ -0.13
LTBP4-227	ENST00000600026	S100A12	P80511	92 aa		14.24	□□□□□ -0.13
LTBP4-227	ENST00000600026		Q6ZRU5	148 aa		14.24	□□□□□ -0.13
LTBP4-227	ENST00000600026	PAM16	Q9Y3D7	125 aa		14.24	□□□□□ -0.13
LTBP4-227	ENST00000600026	SLPI	P03973	132 aa		14.23	□□□□□ -0.13
LTBP4-227	ENST00000600026	SPATA45	Q537H7	98 aa		14.23	□□□□□ -0.13
LTBP4-227	ENST00000600026	TRBV30	A0A0K0K1B3	111 aa		14.22	□□□□□ -0.13
LTBP4-227	ENST00000600026	HERV-K104	P63124	156 aa		14.22	□□□□□ -0.13
LTBP4-227	ENST00000600026	ZNF625	Q96I27	306 aa	Predicted RBP	14.22	□□□□□ -0.13
LTBP4-227	ENST00000600026	KRTAP10-1	P60331	282 aa		14.21	□□□□□ -0.13
LTBP4-227	ENST00000600026	RNF151	Q2KHN1	245 aa		14.21	□□□□□ -0.13
LTBP4-227	ENST00000600026	C10orf25	Q5T742	122 aa		14.21	□□□□□ -0.13
LTBP4-227	ENST00000600026	APOB	P04114	4563 aa	Known RBP	14.2	□□□□□ -0.14
LTBP4-227	ENST00000600026	LINC01620	Q4KN68	170 aa		14.2	□□□□□ -0.14
LTBP4-227	ENST00000600026	ZNF815P	A8K554	130 aa		14.19	□□□□□ -0.14
LTBP4-227	ENST00000600026	C6orf48	Q9UBA6	75 aa		14.19	□□□□□ -0.14
LTBP4-227	ENST00000600026	C9orf163	Q8N9P6	203 aa		14.18	□□□□□ -0.14
LTBP4-227	ENST00000600026	TTTY13	Q9BZ97	58 aa		14.17	□□□□□ -0.14
LTBP4-227	ENST00000600026	PKIG	Q9Y2B9	76 aa		14.17	□□□□□ -0.14
LTBP4-227	ENST00000600026	LINC00587	B1AMM8	73 aa		14.16	□□□□□ -0.14
LTBP4-227	ENST00000600026	MEIG1	Q5JSS6	88 aa		14.16	□□□□□ -0.14
LTBP4-227	ENST00000600026	PCP2	Q8IVA1	136 aa		14.16	□□□□□ -0.14
LTBP4-227	ENST00000600026	KRTAP4-5	Q9BYR2	181 aa		14.16	□□□□□ -0.14
LTBP4-227	ENST00000600026	COX8A	P10176	69 aa		14.14	□□□□□ -0.15
LTBP4-227	ENST00000600026	C9orf116	Q5BN46	136 aa	Predicted RBP	14.14	□□□□□ -0.15
LTBP4-227	ENST00000600026	ERG28	Q9UKR5	140 aa		14.14	□□□□□ -0.15
LTBP4-227	ENST00000600026	LOC107984640	A0A0U1RRK4	108 aa		14.13	□□□□□ -0.15
LTBP4-227	ENST00000600026		A0A0J9YXY3	114 aa		14.12	□□□□□ -0.15
LTBP4-227	ENST00000600026	COX17	Q14061	63 aa		14.12	□□□□□ -0.15
LTBP4-227	ENST00000600026	SCGB1D4	Q6XE38	83 aa		14.12	□□□□□ -0.15
LTBP4-227	ENST00000600026	PFN2	P35080	140 aa		14.11	□□□□□ -0.15
LTBP4-227	ENST00000600026	CIRBP	Q14011	172 aa	Known RBP	14.11	□□□□□ -0.15
LTBP4-227	ENST00000600026	C14orf144	Q96I85	54 aa		14.11	□□□□□ -0.15
LTBP4-227	ENST00000600026	TLX1NB	P0CAT3	122 aa		14.1	□□□□□ -0.15
LTBP4-227	ENST00000600026	LINC00158	P58513	81 aa		14.1	□□□□□ -0.15
LTBP4-227	ENST00000600026	SLC25A34	Q6PIV7	304 aa		14.1	□□□□□ -0.15
LTBP4-227	ENST00000600026	BOD1L2	Q8IYS8	172 aa		14.1	□□□□□ -0.15
LTBP4-227	ENST00000600026	C12orf57	Q99622	126 aa		14.1	□□□□□ -0.15
LTBP4-227	ENST00000600026	NDUFC2-KCTD14	E9PQ53	114 aa		14.09	□□□□□ -0.15
LTBP4-227	ENST00000600026	DLEU1	O43261	78 aa		14.09	□□□□□ -0.15
LTBP4-227	ENST00000600026	SMIM13	P0DJ93	91 aa		14.09	□□□□□ -0.15
LTBP4-227	ENST00000600026	RPL18A	Q02543	176 aa	Known RBP	14.09	□□□□□ -0.15
LTBP4-227	ENST00000600026	FAM30A	Q9NZY2	134 aa		14.08	□□□□□ -0.16
LTBP4-227	ENST00000600026		A0A0U1RRA0	63 aa		14.07	□□□□□ -0.16
LTBP4-227	ENST00000600026	TIMM17B	O60830	172 aa		14.07	□□□□□ -0.16
LTBP4-227	ENST00000600026	SDIM1	Q6ZPB5	146 aa		14.07	□□□□□ -0.16
LTBP4-227	ENST00000600026		Q6ZSA8	131 aa		14.07	□□□□□ -0.16
LTBP4-227	ENST00000600026	HSPG2	P98160	4391 aa		14.06	□□□□□ -0.16
LTBP4-227	ENST00000600026	CDK2AP2	O75956	126 aa		14.05	□□□□□ -0.16
LTBP4-227	ENST00000600026	GAGE2B	Q13066	116 aa		14.05	□□□□□ -0.16
LTBP4-227	ENST00000600026	LINC00518	Q8N0U6	118 aa		14.05	□□□□□ -0.16
LTBP4-227	ENST00000600026	TMEM238	C9JI98	176 aa		14.04	□□□□□ -0.16
LTBP4-227	ENST00000600026	GAGE2E	Q4V326	116 aa		14.04	□□□□□ -0.16
LTBP4-227	ENST00000600026		Q6ZRP5	223 aa		14.04	□□□□□ -0.16
LTBP4-227	ENST00000600026	GAGE2D	Q9UEU5	116 aa		14.04	□□□□□ -0.16
LTBP4-227	ENST00000600026	HAMP	P81172	84 aa		14.03	□□□□□ -0.16
LTBP4-227	ENST00000600026	PTTG1IP	P53801	180 aa		14.02	□□□□□ -0.17
LTBP4-227	ENST00000600026	XG	P55808	180 aa		14.02	□□□□□ -0.17
LTBP4-227	ENST00000600026	MIR7-3HG	Q8N6C7	128 aa		14.02	□□□□□ -0.17
LTBP4-227	ENST00000600026	UQCR10	Q9UDW1	63 aa		14.02	□□□□□ -0.17
LTBP4-227	ENST00000600026		A0A096LNI7	61 aa		14.01	□□□□□ -0.17
LTBP4-227	ENST00000600026	LINC00474	Q9P2X8	69 aa		14.01	□□□□□ -0.17
LTBP4-227	ENST00000600026	TP73-AS1	Q9UF72	201 aa		14.01	□□□□□ -0.17
LTBP4-227	ENST00000600026	AFDN-AS1	Q9Y6Z5	254 aa	Predicted RBP	14.01	□□□□□ -0.17
LTBP4-227	ENST00000600026	IGKV2-24	A0A0C4DH68	120 aa		14	□□□□□ -0.17
LTBP4-227	ENST00000600026	PANO1	I0J062	215 aa		14	□□□□□ -0.17

Retrieved 100 of 20,778 RNA–protein pairs in 89.2 ms