RNA–Protein interactions for RNA: ENST00000596332.1

LIG1-210, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 584 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-210ENST00000596332 LEPROTL1O95214 131 aa6.79□□□□□ -1.32
LIG1-210ENST00000596332 ZNF22P17026 224 aaPredicted RBP6.79□□□□□ -1.32
LIG1-210ENST00000596332 HERVK_113P63121 156 aa6.79□□□□□ -1.32
LIG1-210ENST00000596332 ODF1Q14990 250 aa6.79□□□□□ -1.32
LIG1-210ENST00000596332 C10orf25Q5T742 122 aa6.79□□□□□ -1.32
LIG1-210ENST00000596332 CFAP161Q6P656 301 aa6.79□□□□□ -1.32
LIG1-210ENST00000596332 HSPG2P98160 4391 aa6.78□□□□□ -1.32
LIG1-210ENST00000596332 Q6ZRU5 148 aa6.78□□□□□ -1.32
LIG1-210ENST00000596332 MRPL35Q9NZE8 188 aaKnown RBP6.78□□□□□ -1.32
LIG1-210ENST00000596332 IGLV5-39A0A0G2JS06 123 aa6.77□□□□□ -1.33
LIG1-210ENST00000596332 MALP21145 153 aa6.77□□□□□ -1.33
LIG1-210ENST00000596332 SEC11AP67812 179 aa6.77□□□□□ -1.33
LIG1-210ENST00000596332 ORAOV1Q8WV07 137 aa6.77□□□□□ -1.33
LIG1-210ENST00000596332 C2orf48Q96LS8 159 aa6.77□□□□□ -1.33
LIG1-210ENST00000596332 CHTOPQ9Y3Y2 248 aaKnown RBP6.77□□□□□ -1.33
LIG1-210ENST00000596332 EIF4EBP3O60516 100 aaPredicted RBP6.76□□□□□ -1.33
LIG1-210ENST00000596332 KRTDAPP60985 99 aa6.76□□□□□ -1.33
LIG1-210ENST00000596332 SPAG11BQ08648 103 aa6.76□□□□□ -1.33
LIG1-210ENST00000596332 UNQ6190/PRO20217Q6UXQ8 127 aa6.76□□□□□ -1.33
LIG1-210ENST00000596332 CHAC1Q9BUX1 264 aa6.76□□□□□ -1.33
LIG1-210ENST00000596332 SNHG12Q9BXW3 62 aa6.76□□□□□ -1.33
LIG1-210ENST00000596332 UQCR10Q9UDW1 63 aa6.76□□□□□ -1.33
LIG1-210ENST00000596332 F8VRH5 84 aa6.75□□□□□ -1.33
LIG1-210ENST00000596332 APOMO95445 188 aa6.75□□□□□ -1.33
LIG1-210ENST00000596332 SPINK8P0C7L1 97 aa6.75□□□□□ -1.33
LIG1-210ENST00000596332 SYCNQ0VAF6 134 aa6.75□□□□□ -1.33
LIG1-210ENST00000596332 CIRBPQ14011 172 aaKnown RBP6.75□□□□□ -1.33
LIG1-210ENST00000596332 C2orf82Q6UX34 121 aa6.75□□□□□ -1.33
LIG1-210ENST00000596332 GEMIN7Q9H840 131 aaKnown RBP6.75□□□□□ -1.33
LIG1-210ENST00000596332 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP6.75□□□□□ -1.33
LIG1-210ENST00000596332 TMEM223A0PJW6 202 aa6.74□□□□□ -1.33
LIG1-210ENST00000596332 SYS1-DBNDD2H3BUS1 97 aa6.74□□□□□ -1.33
LIG1-210ENST00000596332 ZNF561-AS1K7EIQ3 104 aa6.74□□□□□ -1.33
LIG1-210ENST00000596332 CDK2AP2O75956 126 aa6.74□□□□□ -1.33
LIG1-210ENST00000596332 GHRHP01286 108 aa6.74□□□□□ -1.33
LIG1-210ENST00000596332 C3orf79P0CE67 100 aa6.74□□□□□ -1.33
LIG1-210ENST00000596332 COL5A1-AS1Q5SY13 56 aa6.74□□□□□ -1.33
LIG1-210ENST00000596332 PMCHL2Q9BQD1 86 aa6.74□□□□□ -1.33
LIG1-210ENST00000596332 C6orf48Q9UBA6 75 aa6.74□□□□□ -1.33
LIG1-210ENST00000596332 HSPB8Q9UJY1 196 aa6.74□□□□□ -1.33
LIG1-210ENST00000596332 PAM16Q9Y3D7 125 aa6.74□□□□□ -1.33
LIG1-210ENST00000596332 F8WDY8 70 aa6.73□□□□□ -1.33
LIG1-210ENST00000596332 HAMPP81172 84 aa6.73□□□□□ -1.33
LIG1-210ENST00000596332 RNF151Q2KHN1 245 aa6.73□□□□□ -1.33
LIG1-210ENST00000596332 SPATA45Q537H7 98 aa6.73□□□□□ -1.33
LIG1-210ENST00000596332 Q8IZM0 81 aa6.73□□□□□ -1.33
LIG1-210ENST00000596332 FAT1Q14517 4588 aa6.72□□□□□ -1.33
LIG1-210ENST00000596332 EPM2AB3EWF7 344 aa6.72□□□□□ -1.33
LIG1-210ENST00000596332 CHTF8P0CG12 524 aa6.72□□□□□ -1.33
LIG1-210ENST00000596332 C9orf116Q5BN46 136 aaPredicted RBP6.72□□□□□ -1.33
LIG1-210ENST00000596332 LINC01545Q5VT33 79 aa6.72□□□□□ -1.33
LIG1-210ENST00000596332 CARD19Q96LW7 228 aa6.72□□□□□ -1.33
LIG1-210ENST00000596332 CAMK2N2Q96S95 79 aa6.72□□□□□ -1.33
LIG1-210ENST00000596332 A0A096LNI7 61 aa6.71□□□□□ -1.34
LIG1-210ENST00000596332 TRAV16A0A0A6YYK6 109 aaPredicted RBP6.71□□□□□ -1.34
LIG1-210ENST00000596332 H0Y8G0 127 aa6.71□□□□□ -1.34
LIG1-210ENST00000596332 HNRNPA3P51991 378 aaKnown RBP6.71□□□□□ -1.34
LIG1-210ENST00000596332 CIRBP-AS1Q8TBR5 109 aa6.71□□□□□ -1.34
LIG1-210ENST00000596332 COX7B2Q8TF08 81 aa6.71□□□□□ -1.34
LIG1-210ENST00000596332 MAP1LC3CQ9BXW4 147 aa6.71□□□□□ -1.34
LIG1-210ENST00000596332 TLX1NBP0CAT3 122 aa6.7□□□□□ -1.34
LIG1-210ENST00000596332 C6orf226Q5I0X4 101 aa6.7□□□□□ -1.34
LIG1-210ENST00000596332 TMEM170BQ5T4T1 132 aa6.7□□□□□ -1.34
LIG1-210ENST00000596332 PET117Q6UWS5 81 aa6.7□□□□□ -1.34
LIG1-210ENST00000596332 SCXQ7RTU7 201 aa6.7□□□□□ -1.34
LIG1-210ENST00000596332 KRTAP7-1Q8IUC3 87 aa6.7□□□□□ -1.34
LIG1-210ENST00000596332 SPACA4Q8TDM5 124 aa6.7□□□□□ -1.34
LIG1-210ENST00000596332 TOMM7Q9P0U1 55 aa6.7□□□□□ -1.34
LIG1-210ENST00000596332 TMEM238LA0A1B0GVL6 79 aa6.69□□□□□ -1.34
LIG1-210ENST00000596332 HSBP1L1C9JCN9 74 aa6.69□□□□□ -1.34
LIG1-210ENST00000596332 NDUFA1O15239 70 aa6.69□□□□□ -1.34
LIG1-210ENST00000596332 DLEU1O43261 78 aa6.69□□□□□ -1.34
LIG1-210ENST00000596332 DPM2O94777 84 aa6.69□□□□□ -1.34
LIG1-210ENST00000596332 TSPEAR-AS2P59090 65 aa6.69□□□□□ -1.34
LIG1-210ENST00000596332 Q6ZRP5 223 aa6.69□□□□□ -1.34
LIG1-210ENST00000596332 ZNF625Q96I27 306 aaPredicted RBP6.69□□□□□ -1.34
LIG1-210ENST00000596332 KRTAP4-5Q9BYR2 181 aa6.69□□□□□ -1.34
LIG1-210ENST00000596332 TRBV30A0A0K0K1B3 111 aa6.68□□□□□ -1.34
LIG1-210ENST00000596332 H3BRM9 83 aa6.68□□□□□ -1.34
LIG1-210ENST00000596332 IGKCP01834 107 aa6.68□□□□□ -1.34
LIG1-210ENST00000596332 PTTG1IPP53801 180 aa6.68□□□□□ -1.34
LIG1-210ENST00000596332 A0A087WYN8 130 aa6.67□□□□□ -1.34
LIG1-210ENST00000596332 A0A1W2PNN7 141 aa6.67□□□□□ -1.34
LIG1-210ENST00000596332 PLNP26678 52 aa6.67□□□□□ -1.34
LIG1-210ENST00000596332 PLAC8Q9NZF1 115 aa6.67□□□□□ -1.34
LIG1-210ENST00000596332 LOC107984640A0A0U1RRK4 108 aa6.66□□□□□ -1.34
LIG1-210ENST00000596332 PRSS2P07478 247 aa6.66□□□□□ -1.34
LIG1-210ENST00000596332 KRTAP10-4P60372 401 aaPredicted RBP6.66□□□□□ -1.34
LIG1-210ENST00000596332 C9orf129Q5T035 196 aaKnown RBP6.66□□□□□ -1.34
LIG1-210ENST00000596332 IGKV2-24A0A0C4DH68 120 aa6.65□□□□□ -1.34
LIG1-210ENST00000596332 LEPROTO15243 131 aa6.65□□□□□ -1.34
LIG1-210ENST00000596332 SMR3BP02814 79 aaPredicted RBP6.65□□□□□ -1.34
LIG1-210ENST00000596332 CXCL5P42830 114 aa6.65□□□□□ -1.34
LIG1-210ENST00000596332 CKS1BP61024 79 aa6.65□□□□□ -1.34
LIG1-210ENST00000596332 BATFQ16520 125 aa6.65□□□□□ -1.34
LIG1-210ENST00000596332 STPG4Q8N801 248 aa6.65□□□□□ -1.34
LIG1-210ENST00000596332 IGKV2D-26A0A0A0MRZ7 120 aa6.64□□□□□ -1.35
LIG1-210ENST00000596332 NDUFC2-KCTD14E9PQ53 114 aa6.64□□□□□ -1.35
LIG1-210ENST00000596332 GAGE2BQ13066 116 aa6.64□□□□□ -1.35
LIG1-210ENST00000596332 VPS13BQ7Z7G8 4022 aa6.63□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 80.1 ms