RNA–Protein interactions for RNA: ENST00000593829.5

LSM4-203, Transcript of LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LSM4, Length 1,908 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM4-203ENST00000593829 TRBV30A0A0K0K1B3 111 aa13.33□□□□□ -0.28
LSM4-203ENST00000593829 DNAH10OSP0CZ25 163 aa13.33□□□□□ -0.28
LSM4-203ENST00000593829 ATXN8Q156A1 80 aa13.33□□□□□ -0.28
LSM4-203ENST00000593829 MUSTN1Q8IVN3 82 aa13.33□□□□□ -0.28
LSM4-203ENST00000593829 IGHV3-38A0A0C4DH36 116 aa13.33□□□□□ -0.28
LSM4-203ENST00000593829 C9JAW5 83 aa13.33□□□□□ -0.28
LSM4-203ENST00000593829 DNAJC30Q96LL9 226 aa13.33□□□□□ -0.28
LSM4-203ENST00000593829 TNFRSF18Q9Y5U5 241 aa13.33□□□□□ -0.28
LSM4-203ENST00000593829 RPL13AP40429 203 aaKnown RBP13.32□□□□□ -0.28
LSM4-203ENST00000593829 A0A0J9YXY3 114 aa13.31□□□□□ -0.28
LSM4-203ENST00000593829 C6orf223Q8N319 242 aa13.31□□□□□ -0.28
LSM4-203ENST00000593829 RTL8CO15255 209 aa13.31□□□□□ -0.28
LSM4-203ENST00000593829 MRPS36P82909 103 aaKnown RBP13.31□□□□□ -0.28
LSM4-203ENST00000593829 OPRPNQ99935 248 aaPredicted RBP13.31□□□□□ -0.28
LSM4-203ENST00000593829 LINC01620Q4KN68 170 aa13.3□□□□□ -0.28
LSM4-203ENST00000593829 LINC00336Q6ZUF6 198 aa13.3□□□□□ -0.28
LSM4-203ENST00000593829 DAZ4Q86SG3 579 aaKnown RBP13.3□□□□□ -0.28
LSM4-203ENST00000593829 SPANXDQ9BXN6 97 aa13.3□□□□□ -0.28
LSM4-203ENST00000593829 DAZ3Q9NR90 486 aaKnown RBP13.3□□□□□ -0.28
LSM4-203ENST00000593829 SPANXCQ9NY87 97 aa13.3□□□□□ -0.28
LSM4-203ENST00000593829 A0A0J9YXV3 536 aa13.29□□□□□ -0.28
LSM4-203ENST00000593829 LINC01556Q5JQF7 62 aa13.29□□□□□ -0.28
LSM4-203ENST00000593829 LITAFQ99732 161 aa13.29□□□□□ -0.28
LSM4-203ENST00000593829 TRBV10-2A0A0K0K1G8 114 aa13.29□□□□□ -0.28
LSM4-203ENST00000593829 DNAH2Q9P225 4427 aa13.28□□□□□ -0.28
LSM4-203ENST00000593829 DEFB104AQ8WTQ1 72 aa13.28□□□□□ -0.28
LSM4-203ENST00000593829 DNAH10Q8IVF4 4471 aa13.28□□□□□ -0.28
LSM4-203ENST00000593829 IGHV3-30-3P0DP02 117 aa13.27□□□□□ -0.28
LSM4-203ENST00000593829 Q6Q795 121 aa13.27□□□□□ -0.28
LSM4-203ENST00000593829 SVIPQ8NHG7 77 aa13.27□□□□□ -0.28
LSM4-203ENST00000593829 TRBV6-8A0A0A6YYG3 113 aa13.26□□□□□ -0.29
LSM4-203ENST00000593829 FAM104AQ969W3 186 aa13.26□□□□□ -0.29
LSM4-203ENST00000593829 TIMM21Q9BVV7 248 aa13.26□□□□□ -0.29
LSM4-203ENST00000593829 IGHV1-58A0A0C4DH39 117 aa13.25□□□□□ -0.29
LSM4-203ENST00000593829 NTN5Q8WTR8 489 aaPredicted RBP13.24□□□□□ -0.29
LSM4-203ENST00000593829 ANAPC13Q9BS18 74 aa13.24□□□□□ -0.29
LSM4-203ENST00000593829 TINCRA0A1B0GVN0 87 aa13.23□□□□□ -0.29
LSM4-203ENST00000593829 H3BT86 120 aa13.23□□□□□ -0.29
LSM4-203ENST00000593829 TRIAP1O43715 76 aa13.23□□□□□ -0.29
LSM4-203ENST00000593829 TIMM17BO60830 172 aa13.23□□□□□ -0.29
LSM4-203ENST00000593829 Q1RN00 199 aa13.23□□□□□ -0.29
LSM4-203ENST00000593829 FRAS1Q86XX4 4008 aa13.23□□□□□ -0.29
LSM4-203ENST00000593829 MIAQ16674 131 aa13.23□□□□□ -0.29
LSM4-203ENST00000593829 NTM-AS1Q6ZSK4 140 aa13.23□□□□□ -0.29
LSM4-203ENST00000593829 SPANXA1Q9NS26 97 aa13.23□□□□□ -0.29
LSM4-203ENST00000593829 Q8N3U1 123 aa13.22□□□□□ -0.29
LSM4-203ENST00000593829 IGHV3-64A0A075B6Q5 118 aa13.21□□□□□ -0.29
LSM4-203ENST00000593829 IBA57-AS1B1ANH7 110 aa13.21□□□□□ -0.3
LSM4-203ENST00000593829 H7C2G1 150 aa13.21□□□□□ -0.3
LSM4-203ENST00000593829 SNCGO76070 127 aa13.21□□□□□ -0.3
LSM4-203ENST00000593829 GAGE2BQ13066 116 aa13.21□□□□□ -0.3
LSM4-203ENST00000593829 GAGE2EQ4V326 116 aa13.21□□□□□ -0.3
LSM4-203ENST00000593829 CHCHD5Q9BSY4 110 aa13.21□□□□□ -0.3
LSM4-203ENST00000593829 GAGE2DQ9UEU5 116 aa13.21□□□□□ -0.3
LSM4-203ENST00000593829 COX6CP09669 75 aa13.2□□□□□ -0.3
LSM4-203ENST00000593829 IFITM1P13164 125 aa13.2□□□□□ -0.3
LSM4-203ENST00000593829 UBE2WQ96B02 151 aa13.2□□□□□ -0.3
LSM4-203ENST00000593829 CHCHD7Q9BUK0 85 aa13.2□□□□□ -0.3
LSM4-203ENST00000593829 NDUFA12Q9UI09 145 aa13.2□□□□□ -0.3
LSM4-203ENST00000593829 TRAV8-4A0A0B4J246 113 aa13.19□□□□□ -0.3
LSM4-203ENST00000593829 GAGE6Q13070 117 aa13.19□□□□□ -0.3
LSM4-203ENST00000593829 FAM240AA0A1B0GVK7 77 aa13.18□□□□□ -0.3
LSM4-203ENST00000593829 Q6ZRN7 208 aaPredicted RBP13.18□□□□□ -0.3
LSM4-203ENST00000593829 TNP2Q05952 138 aa13.17□□□□□ -0.3
LSM4-203ENST00000593829 DNAH17Q9UFH2 4485 aa13.17□□□□□ -0.3
LSM4-203ENST00000593829 ADAMTSL4-AS1Q5T5F5 129 aa13.17□□□□□ -0.3
LSM4-203ENST00000593829 UBE2D4Q9Y2X8 147 aa13.17□□□□□ -0.3
LSM4-203ENST00000593829 FAT2Q9NYQ8 4349 aa13.16□□□□□ -0.3
LSM4-203ENST00000593829 C2orf82Q6UX34 121 aa13.16□□□□□ -0.3
LSM4-203ENST00000593829 TRAV8-3A0A0A6YYJ7 113 aa13.15□□□□□ -0.3
LSM4-203ENST00000593829 H7C423 109 aa13.15□□□□□ -0.3
LSM4-203ENST00000593829 LST1O00453 97 aa13.15□□□□□ -0.3
LSM4-203ENST00000593829 NDUFV3P56181 108 aaKnown RBP13.15□□□□□ -0.3
LSM4-203ENST00000593829 TMEM243Q9BU79 118 aa13.15□□□□□ -0.3
LSM4-203ENST00000593829 Q9HAA7 133 aa13.15□□□□□ -0.3
LSM4-203ENST00000593829 IGLV5-45A0A087WSX0 123 aa13.15□□□□□ -0.3
LSM4-203ENST00000593829 TEX49A0A1B0GTD5 131 aa13.15□□□□□ -0.3
LSM4-203ENST00000593829 A0A1B0GVY2 172 aa13.15□□□□□ -0.3
LSM4-203ENST00000593829 EPPK1P58107 5090 aaKnown RBP13.15□□□□□ -0.31
LSM4-203ENST00000593829 PRSS2P07478 247 aa13.14□□□□□ -0.31
LSM4-203ENST00000593829 KLK12Q9UKR0 248 aa13.14□□□□□ -0.31
LSM4-203ENST00000593829 NDUFA1O15239 70 aa13.12□□□□□ -0.31
LSM4-203ENST00000593829 UBE2L6O14933 153 aa13.11□□□□□ -0.31
LSM4-203ENST00000593829 ANGP03950 147 aaKnown RBP13.1□□□□□ -0.31
LSM4-203ENST00000593829 PSCAO43653 123 aa13.09□□□□□ -0.31
LSM4-203ENST00000593829 FAM19A3Q7Z5A8 133 aa13.09□□□□□ -0.31
LSM4-203ENST00000593829 PPDPFQ9H3Y8 114 aa13.09□□□□□ -0.31
LSM4-203ENST00000593829 HECTD4Q9Y4D8 3996 aa13.09□□□□□ -0.31
LSM4-203ENST00000593829 A0A1B0GUV1 79 aa13.08□□□□□ -0.32
LSM4-203ENST00000593829 RMI2Q96E14 147 aa13.07□□□□□ -0.32
LSM4-203ENST00000593829 IGLV5-39A0A0G2JS06 123 aa13.07□□□□□ -0.32
LSM4-203ENST00000593829 CRPP02741 224 aa13.07□□□□□ -0.32
LSM4-203ENST00000593829 CIRBPQ14011 172 aaKnown RBP13.07□□□□□ -0.32
LSM4-203ENST00000593829 COPS9Q8WXC6 57 aa13.07□□□□□ -0.32
LSM4-203ENST00000593829 PKD1P98161 4303 aa13.06□□□□□ -0.32
LSM4-203ENST00000593829 RNASE13Q5GAN3 156 aaKnown RBP13.05□□□□□ -0.32
LSM4-203ENST00000593829 ENHOQ6UWT2 76 aa13.05□□□□□ -0.32
LSM4-203ENST00000593829 IGKV2D-29A0A075B6S2 120 aaPredicted RBP13.05□□□□□ -0.32
LSM4-203ENST00000593829 TRBV7-7A0A0K0K1E9 115 aa13.05□□□□□ -0.32
LSM4-203ENST00000593829 IGKV2-29A2NJV5 120 aaPredicted RBP13.05□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 73.9 ms