RNA–Protein interactions for RNA: ENST00000591239.1

DNMT1-223, Transcript of DNA methyltransferase 1, human

TSL 2

Gene DNMT1, Length 550 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
DNMT1-223	ENST00000591239	URB1-AS1	Q96HZ7	61 aa		5.78	□□□□□ -1.48
DNMT1-223	ENST00000591239	CST9L	Q9H4G1	147 aa		5.78	□□□□□ -1.48
DNMT1-223	ENST00000591239	CDKN2A-AS1	Q9UH64	79 aa		5.78	□□□□□ -1.48
DNMT1-223	ENST00000591239		A0A096LNJ9	63 aa		5.77	□□□□□ -1.49
DNMT1-223	ENST00000591239	TINCR	A0A1B0GVN0	87 aa		5.77	□□□□□ -1.49
DNMT1-223	ENST00000591239	RAB5B	P61020	215 aa		5.77	□□□□□ -1.49
DNMT1-223	ENST00000591239	C6orf48	Q9UBA6	75 aa		5.77	□□□□□ -1.49
DNMT1-223	ENST00000591239	TRBV30	A0A0K0K1B3	111 aa		5.76	□□□□□ -1.49
DNMT1-223	ENST00000591239		A0A1W2PNN7	141 aa		5.76	□□□□□ -1.49
DNMT1-223	ENST00000591239	PRSS2	P07478	247 aa		5.76	□□□□□ -1.49
DNMT1-223	ENST00000591239	TLX1NB	P0CAT3	122 aa		5.76	□□□□□ -1.49
DNMT1-223	ENST00000591239	HNRNPA3	P51991	378 aa	Known RBP	5.76	□□□□□ -1.49
DNMT1-223	ENST00000591239	PMVK	Q15126	192 aa		5.76	□□□□□ -1.49
DNMT1-223	ENST00000591239	PMCHL1	Q16048	86 aa		5.76	□□□□□ -1.49
DNMT1-223	ENST00000591239	C6orf226	Q5I0X4	101 aa		5.76	□□□□□ -1.49
DNMT1-223	ENST00000591239	C2orf82	Q6UX34	121 aa		5.76	□□□□□ -1.49
DNMT1-223	ENST00000591239		Q8IZM0	81 aa		5.76	□□□□□ -1.49
DNMT1-223	ENST00000591239	LINC00469	Q8N7U9	141 aa		5.76	□□□□□ -1.49
DNMT1-223	ENST00000591239	PACRG	Q96M98	296 aa	Predicted RBP	5.76	□□□□□ -1.49
DNMT1-223	ENST00000591239	TOMM7	Q9P0U1	55 aa		5.76	□□□□□ -1.49
DNMT1-223	ENST00000591239	PKHD1L1	Q86WI1	4243 aa		5.75	□□□□□ -1.49
DNMT1-223	ENST00000591239	HBD	P02042	147 aa		5.75	□□□□□ -1.49
DNMT1-223	ENST00000591239	CKS1B	P61024	79 aa		5.75	□□□□□ -1.49
DNMT1-223	ENST00000591239	C9orf116	Q5BN46	136 aa	Predicted RBP	5.75	□□□□□ -1.49
DNMT1-223	ENST00000591239		Q6ZRP5	223 aa		5.75	□□□□□ -1.49
DNMT1-223	ENST00000591239	HERC1	Q15751	4861 aa		5.75	□□□□□ -1.49
DNMT1-223	ENST00000591239	IGLV5-45	A0A087WSX0	123 aa		5.74	□□□□□ -1.49
DNMT1-223	ENST00000591239	KRTAP29-1	A8MX34	341 aa	Predicted RBP	5.74	□□□□□ -1.49
DNMT1-223	ENST00000591239	SMIM1	B2RUZ4	78 aa		5.74	□□□□□ -1.49
DNMT1-223	ENST00000591239	NDUFA6	P56556	154 aa		5.74	□□□□□ -1.49
DNMT1-223	ENST00000591239	PDZD11	Q5EBL8	140 aa		5.74	□□□□□ -1.49
DNMT1-223	ENST00000591239	LRP1	Q07954	4544 aa	Known RBP	5.74	□□□□□ -1.49
DNMT1-223	ENST00000591239	NDUFC2-KCTD14	E9PQ53	114 aa		5.73	□□□□□ -1.49
DNMT1-223	ENST00000591239	ATP5L	O75964	103 aa		5.73	□□□□□ -1.49
DNMT1-223	ENST00000591239	PRR3	P79522	188 aa	Known RBP	5.73	□□□□□ -1.49
DNMT1-223	ENST00000591239	GAGE2E	Q4V326	116 aa		5.73	□□□□□ -1.49
DNMT1-223	ENST00000591239	CHCHD1	Q96BP2	118 aa	Known RBP	5.73	□□□□□ -1.49
DNMT1-223	ENST00000591239	GAGE2D	Q9UEU5	116 aa		5.73	□□□□□ -1.49
DNMT1-223	ENST00000591239		F8VRH5	84 aa		5.72	□□□□□ -1.49
DNMT1-223	ENST00000591239	OXT	P01178	125 aa		5.72	□□□□□ -1.49
DNMT1-223	ENST00000591239	TRGC2	P03986	189 aa		5.72	□□□□□ -1.49
DNMT1-223	ENST00000591239	SPINK8	P0C7L1	97 aa		5.72	□□□□□ -1.49
DNMT1-223	ENST00000591239	IGLC3	P0DOY3	106 aa		5.72	□□□□□ -1.49
DNMT1-223	ENST00000591239	FAM168B	A1KXE4	195 aa		5.71	□□□□□ -1.5
DNMT1-223	ENST00000591239		H3BRM9	83 aa		5.71	□□□□□ -1.5
DNMT1-223	ENST00000591239	CXCL5	P42830	114 aa		5.71	□□□□□ -1.5
DNMT1-223	ENST00000591239	BAGE3	Q86Y29	109 aa		5.71	□□□□□ -1.5
DNMT1-223	ENST00000591239	COX7B2	Q8TF08	81 aa		5.71	□□□□□ -1.5
DNMT1-223	ENST00000591239	FAT3	Q8TDW7	4589 aa		5.7	□□□□□ -1.5
DNMT1-223	ENST00000591239	COLCA2	A8K830	154 aa		5.7	□□□□□ -1.5
DNMT1-223	ENST00000591239	PHF5A	Q7RTV0	110 aa	Known RBP	5.7	□□□□□ -1.5
DNMT1-223	ENST00000591239	FAM19A5	Q7Z5A7	132 aa	Predicted RBP	5.7	□□□□□ -1.5
DNMT1-223	ENST00000591239	HSBP1	O75506	76 aa		5.69	□□□□□ -1.5
DNMT1-223	ENST00000591239	ZNF22	P17026	224 aa	Predicted RBP	5.69	□□□□□ -1.5
DNMT1-223	ENST00000591239	C9orf129	Q5T035	196 aa	Known RBP	5.69	□□□□□ -1.5
DNMT1-223	ENST00000591239	FAM19A2	Q8N3H0	131 aa		5.69	□□□□□ -1.5
DNMT1-223	ENST00000591239	IFI27L1	Q96BM0	104 aa		5.69	□□□□□ -1.5
DNMT1-223	ENST00000591239	PSORS1C2	Q9UIG4	136 aa		5.69	□□□□□ -1.5
DNMT1-223	ENST00000591239	IGLV5-39	A0A0G2JS06	123 aa		5.68	□□□□□ -1.5
DNMT1-223	ENST00000591239	C11orf86	A6NJI1	115 aa		5.68	□□□□□ -1.5
DNMT1-223	ENST00000591239	TMEM170B	Q5T4T1	132 aa		5.68	□□□□□ -1.5
DNMT1-223	ENST00000591239	KRTAP7-1	Q8IUC3	87 aa		5.68	□□□□□ -1.5
DNMT1-223	ENST00000591239	CHTOP	Q9Y3Y2	248 aa	Known RBP	5.68	□□□□□ -1.5
DNMT1-223	ENST00000591239	TRAV12-1	A0A0B4J245	112 aa		5.67	□□□□□ -1.5
DNMT1-223	ENST00000591239		M0QXV9	152 aa		5.67	□□□□□ -1.5
DNMT1-223	ENST00000591239	SERF1A	O75920	110 aa		5.67	□□□□□ -1.5
DNMT1-223	ENST00000591239	LINC00310	P59036	64 aa		5.67	□□□□□ -1.5
DNMT1-223	ENST00000591239	SRSF9	Q13242	221 aa	Known RBP eCLIP	5.67	□□□□□ -1.5
DNMT1-223	ENST00000591239	XAGE1A	Q9HD64	81 aa		5.67	□□□□□ -1.5
DNMT1-223	ENST00000591239	SCO1	O75880	301 aa		5.66	□□□□□ -1.5
DNMT1-223	ENST00000591239	C1orf137	Q5JT78	98 aa		5.66	□□□□□ -1.5
DNMT1-223	ENST00000591239	SERTAD4-AS1	Q5TG53	156 aa		5.66	□□□□□ -1.5
DNMT1-223	ENST00000591239	SPINK6	Q6UWN8	80 aa		5.66	□□□□□ -1.5
DNMT1-223	ENST00000591239	KRTAP11-1	Q8IUC1	163 aa		5.66	□□□□□ -1.5
DNMT1-223	ENST00000591239	NUPR1	O60356	82 aa		5.65	□□□□□ -1.5
DNMT1-223	ENST00000591239	LEPROTL1	O95214	131 aa		5.65	□□□□□ -1.5
DNMT1-223	ENST00000591239		H0Y8G0	127 aa		5.64	□□□□□ -1.51
DNMT1-223	ENST00000591239	MT1HL1	P0DM35	61 aa		5.64	□□□□□ -1.51
DNMT1-223	ENST00000591239	UBE2B	P63146	152 aa		5.64	□□□□□ -1.51
DNMT1-223	ENST00000591239	C22orf24	Q9Y442	160 aa		5.64	□□□□□ -1.51
DNMT1-223	ENST00000591239	TMEM223	A0PJW6	202 aa		5.63	□□□□□ -1.51
DNMT1-223	ENST00000591239	PFN2	P35080	140 aa		5.63	□□□□□ -1.51
DNMT1-223	ENST00000591239	ODF1	Q14990	250 aa		5.63	□□□□□ -1.51
DNMT1-223	ENST00000591239	SFTA2	Q6UW10	78 aa		5.63	□□□□□ -1.51
DNMT1-223	ENST00000591239	REG3G	Q6UW15	175 aa		5.63	□□□□□ -1.51
DNMT1-223	ENST00000591239	HSPB8	Q9UJY1	196 aa		5.63	□□□□□ -1.51
DNMT1-223	ENST00000591239	IGLV7-43	P04211	117 aa		5.62	□□□□□ -1.51
DNMT1-223	ENST00000591239	FABP4	P15090	132 aa		5.62	□□□□□ -1.51
DNMT1-223	ENST00000591239	COX17	Q14061	63 aa		5.62	□□□□□ -1.51
DNMT1-223	ENST00000591239	LBH	Q53QV2	105 aa	Predicted RBP	5.62	□□□□□ -1.51
DNMT1-223	ENST00000591239	ZNF625	Q96I27	306 aa	Predicted RBP	5.62	□□□□□ -1.51
DNMT1-223	ENST00000591239	LINC01600	Q96MT4	127 aa		5.62	□□□□□ -1.51
DNMT1-223	ENST00000591239	TP73-AS1	Q9UF72	201 aa		5.62	□□□□□ -1.51
DNMT1-223	ENST00000591239	ERG28	Q9UKR5	140 aa		5.62	□□□□□ -1.51
DNMT1-223	ENST00000591239	PLA2G2D	Q9UNK4	145 aa		5.62	□□□□□ -1.51
DNMT1-223	ENST00000591239	HIST1H2BK	O60814	126 aa		5.61	□□□□□ -1.51
DNMT1-223	ENST00000591239	HIST1H2BJ	P06899	126 aa		5.61	□□□□□ -1.51
DNMT1-223	ENST00000591239	HIST1H2BO	P23527	126 aa		5.61	□□□□□ -1.51
DNMT1-223	ENST00000591239	HIST1H2BB	P33778	126 aa		5.61	□□□□□ -1.51
DNMT1-223	ENST00000591239	HIST1H2BD	P58876	126 aa		5.61	□□□□□ -1.51

Retrieved 100 of 20,778 RNA–protein pairs in 96.7 ms