RNA–Protein interactions for RNA: ENST00000590630.5

LIG3-213, Transcript of DNA ligase 3, humanhuman

TSL 5

Gene LIG3, Length 904 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-213ENST00000590630 CDKN2A-AS1Q9UH64 79 aa7.57□□□□□ -1.2
LIG3-213ENST00000590630 A0A087WYN8 130 aa7.56□□□□□ -1.2
LIG3-213ENST00000590630 A0A096LNI7 61 aa7.56□□□□□ -1.2
LIG3-213ENST00000590630 A0A1B0GV90 55 aa7.56□□□□□ -1.2
LIG3-213ENST00000590630 HIST1H2BKO60814 126 aa7.56□□□□□ -1.2
LIG3-213ENST00000590630 ATP5LO75964 103 aa7.56□□□□□ -1.2
LIG3-213ENST00000590630 HIST1H2BJP06899 126 aa7.56□□□□□ -1.2
LIG3-213ENST00000590630 HIST1H2BOP23527 126 aa7.56□□□□□ -1.2
LIG3-213ENST00000590630 HIST1H2BBP33778 126 aa7.56□□□□□ -1.2
LIG3-213ENST00000590630 HIST1H2BDP58876 126 aa7.56□□□□□ -1.2
LIG3-213ENST00000590630 HIST1H2BCP62807 126 aa7.56□□□□□ -1.2
LIG3-213ENST00000590630 KIAA0087Q14695 138 aa7.56□□□□□ -1.2
LIG3-213ENST00000590630 HIST2H2BEQ16778 126 aa7.56□□□□□ -1.2
LIG3-213ENST00000590630 MAJINQ3KP22 176 aa7.56□□□□□ -1.2
LIG3-213ENST00000590630 HIST2H2BFQ5QNW6 126 aaPredicted RBP7.56□□□□□ -1.2
LIG3-213ENST00000590630 HIST1H2BHQ93079 126 aa7.56□□□□□ -1.2
LIG3-213ENST00000590630 PACRGQ96M98 296 aaPredicted RBP7.56□□□□□ -1.2
LIG3-213ENST00000590630 HIST1H2BNQ99877 126 aa7.56□□□□□ -1.2
LIG3-213ENST00000590630 HIST1H2BMQ99879 126 aa7.56□□□□□ -1.2
LIG3-213ENST00000590630 PLAC8Q9NZF1 115 aa7.56□□□□□ -1.2
LIG3-213ENST00000590630 IGLV5-45A0A087WSX0 123 aa7.55□□□□□ -1.2
LIG3-213ENST00000590630 PRSS2P07478 247 aa7.55□□□□□ -1.2
LIG3-213ENST00000590630 PTTG1IPP53801 180 aa7.55□□□□□ -1.2
LIG3-213ENST00000590630 JOSD1Q15040 202 aaPredicted RBP7.55□□□□□ -1.2
LIG3-213ENST00000590630 COA6Q5JTJ3 125 aaKnown RBP7.55□□□□□ -1.2
LIG3-213ENST00000590630 BAGE3Q86Y29 109 aa7.55□□□□□ -1.2
LIG3-213ENST00000590630 Q8IZM0 81 aa7.55□□□□□ -1.2
LIG3-213ENST00000590630 UNQ6190/PRO20217Q6UXQ8 127 aa7.54□□□□□ -1.2
LIG3-213ENST00000590630 TRBV30A0A0K0K1B3 111 aa7.53□□□□□ -1.2
LIG3-213ENST00000590630 HSBP1O75506 76 aa7.53□□□□□ -1.2
LIG3-213ENST00000590630 C6orf226Q5I0X4 101 aa7.53□□□□□ -1.2
LIG3-213ENST00000590630 C10orf25Q5T742 122 aa7.53□□□□□ -1.2
LIG3-213ENST00000590630 STPG4Q8N801 248 aa7.53□□□□□ -1.2
LIG3-213ENST00000590630 TOMM7Q9P0U1 55 aa7.53□□□□□ -1.2
LIG3-213ENST00000590630 SMIM1B2RUZ4 78 aa7.52□□□□□ -1.21
LIG3-213ENST00000590630 H3BRM9 83 aa7.52□□□□□ -1.21
LIG3-213ENST00000590630 TLX1NBP0CAT3 122 aa7.52□□□□□ -1.21
LIG3-213ENST00000590630 INAFM2P0DMQ5 153 aa7.52□□□□□ -1.21
LIG3-213ENST00000590630 IGLC3P0DOY3 106 aa7.52□□□□□ -1.21
LIG3-213ENST00000590630 CKS1BP61024 79 aa7.52□□□□□ -1.21
LIG3-213ENST00000590630 RPL18AQ02543 176 aaKnown RBP7.52□□□□□ -1.21
LIG3-213ENST00000590630 GAGE2BQ13066 116 aa7.52□□□□□ -1.21
LIG3-213ENST00000590630 C2orf82Q6UX34 121 aa7.52□□□□□ -1.21
LIG3-213ENST00000590630 HIST1H2BLQ99880 126 aa7.52□□□□□ -1.21
LIG3-213ENST00000590630 C6orf48Q9UBA6 75 aa7.52□□□□□ -1.21
LIG3-213ENST00000590630 FLG2Q5D862 2391 aaPredicted RBP7.52□□□□□ -1.21
LIG3-213ENST00000590630 FABP4P15090 132 aa7.51□□□□□ -1.21
LIG3-213ENST00000590630 CXCL5P42830 114 aa7.51□□□□□ -1.21
LIG3-213ENST00000590630 SERF1AO75920 110 aa7.5□□□□□ -1.21
LIG3-213ENST00000590630 KRTAP10-4P60372 401 aaPredicted RBP7.5□□□□□ -1.21
LIG3-213ENST00000590630 RPL37AP61513 92 aaKnown RBP7.5□□□□□ -1.21
LIG3-213ENST00000590630 C7orf33Q8WU49 177 aa7.5□□□□□ -1.21
LIG3-213ENST00000590630 IFI27L1Q96BM0 104 aa7.5□□□□□ -1.21
LIG3-213ENST00000590630 CBY1Q9Y3M2 126 aa7.5□□□□□ -1.21
LIG3-213ENST00000590630 TRAV12-1A0A0B4J245 112 aa7.49□□□□□ -1.21
LIG3-213ENST00000590630 NDUFC2-KCTD14E9PQ53 114 aa7.49□□□□□ -1.21
LIG3-213ENST00000590630 F8VRH5 84 aa7.49□□□□□ -1.21
LIG3-213ENST00000590630 SPINK8P0C7L1 97 aa7.49□□□□□ -1.21
LIG3-213ENST00000590630 LINC00310P59036 64 aa7.49□□□□□ -1.21
LIG3-213ENST00000590630 Q6ZRP5 223 aa7.49□□□□□ -1.21
LIG3-213ENST00000590630 FAM19A2Q8N3H0 131 aa7.49□□□□□ -1.21
LIG3-213ENST00000590630 COX7B2Q8TF08 81 aa7.49□□□□□ -1.21
LIG3-213ENST00000590630 MYCBP2O75592 4640 aa7.49□□□□□ -1.21
LIG3-213ENST00000590630 ZNF22P17026 224 aaPredicted RBP7.48□□□□□ -1.21
LIG3-213ENST00000590630 CHTOPQ9Y3Y2 248 aaKnown RBP7.48□□□□□ -1.21
LIG3-213ENST00000590630 M0R143 59 aa7.47□□□□□ -1.21
LIG3-213ENST00000590630 LEPROTL1O95214 131 aa7.47□□□□□ -1.21
LIG3-213ENST00000590630 C9orf116Q5BN46 136 aaPredicted RBP7.47□□□□□ -1.21
LIG3-213ENST00000590630 PRO1933Q9H354 126 aa7.47□□□□□ -1.21
LIG3-213ENST00000590630 IGLV5-39A0A0G2JS06 123 aa7.46□□□□□ -1.22
LIG3-213ENST00000590630 C11orf86A6NJI1 115 aa7.46□□□□□ -1.22
LIG3-213ENST00000590630 GAGE2EQ4V326 116 aa7.46□□□□□ -1.22
LIG3-213ENST00000590630 GAGE2DQ9UEU5 116 aa7.46□□□□□ -1.22
LIG3-213ENST00000590630 DMBT1Q9UGM3 2413 aaPredicted RBP7.45□□□□□ -1.22
LIG3-213ENST00000590630 A0A1W2PNN7 141 aa7.45□□□□□ -1.22
LIG3-213ENST00000590630 TMEM170BQ5T4T1 132 aa7.45□□□□□ -1.22
LIG3-213ENST00000590630 HSPB8Q9UJY1 196 aa7.45□□□□□ -1.22
LIG3-213ENST00000590630 NUPR1O60356 82 aa7.44□□□□□ -1.22
LIG3-213ENST00000590630 SFTA2Q6UW10 78 aa7.43□□□□□ -1.22
LIG3-213ENST00000590630 FAM168BA1KXE4 195 aa7.42□□□□□ -1.22
LIG3-213ENST00000590630 H0Y8G0 127 aa7.42□□□□□ -1.22
LIG3-213ENST00000590630 PRR3P79522 188 aaKnown RBP7.42□□□□□ -1.22
LIG3-213ENST00000590630 ODF1Q14990 250 aa7.42□□□□□ -1.22
LIG3-213ENST00000590630 C9orf129Q5T035 196 aaKnown RBP7.42□□□□□ -1.22
LIG3-213ENST00000590630 TMEM223A0PJW6 202 aa7.41□□□□□ -1.22
LIG3-213ENST00000590630 DLEU1O43261 78 aa7.41□□□□□ -1.22
LIG3-213ENST00000590630 FAM19A5Q7Z5A7 132 aaPredicted RBP7.41□□□□□ -1.22
LIG3-213ENST00000590630 SNHG12Q9BXW3 62 aa7.41□□□□□ -1.22
LIG3-213ENST00000590630 PLNP26678 52 aa7.4□□□□□ -1.22
LIG3-213ENST00000590630 PKHD1L1Q86WI1 4243 aa7.4□□□□□ -1.22
LIG3-213ENST00000590630 M0QXV9 152 aa7.39□□□□□ -1.23
LIG3-213ENST00000590630 HNRNPA3P51991 378 aaKnown RBP7.39□□□□□ -1.23
LIG3-213ENST00000590630 ANKRD39Q53RE8 183 aa7.39□□□□□ -1.23
LIG3-213ENST00000590630 PHF5AQ7RTV0 110 aaKnown RBP7.39□□□□□ -1.23
LIG3-213ENST00000590630 MAP1LC3CQ9BXW4 147 aa7.39□□□□□ -1.23
LIG3-213ENST00000590630 XAGE1AQ9HD64 81 aa7.39□□□□□ -1.23
LIG3-213ENST00000590630 COX17Q14061 63 aa7.38□□□□□ -1.23
LIG3-213ENST00000590630 KRTAP7-1Q8IUC3 87 aa7.38□□□□□ -1.23
LIG3-213ENST00000590630 ZNF625Q96I27 306 aaPredicted RBP7.38□□□□□ -1.23
LIG3-213ENST00000590630 MIEN1Q9BRT3 115 aa7.38□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 68 ms