RNA–Protein interactions for RNA: ENST00000586058.1

LIG3-206, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 581 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-206ENST00000586058 ZNF561-AS1K7EIQ3 104 aa4.21□□□□□ -1.74
LIG3-206ENST00000586058 PSCAO43653 123 aa4.21□□□□□ -1.74
LIG3-206ENST00000586058 EIF4EBP3O60516 100 aaPredicted RBP4.21□□□□□ -1.74
LIG3-206ENST00000586058 HINT1P49773 126 aaPredicted RBP4.21□□□□□ -1.74
LIG3-206ENST00000586058 RPL24P83731 157 aaKnown RBP4.21□□□□□ -1.74
LIG3-206ENST00000586058 COX6A2Q02221 97 aa4.21□□□□□ -1.74
LIG3-206ENST00000586058 Q6ZVH6 145 aa4.21□□□□□ -1.74
LIG3-206ENST00000586058 MUC7Q8TAX7 377 aa4.21□□□□□ -1.74
LIG3-206ENST00000586058 WWC2-AS2Q96NR7 200 aa4.21□□□□□ -1.74
LIG3-206ENST00000586058 TM2D2Q9BX73 214 aa4.21□□□□□ -1.74
LIG3-206ENST00000586058 TTTY13Q9BZ97 58 aa4.21□□□□□ -1.74
LIG3-206ENST00000586058 Q9H8V8 135 aa4.21□□□□□ -1.74
LIG3-206ENST00000586058 SPANXB1Q9NS25 103 aaPredicted RBP4.21□□□□□ -1.74
LIG3-206ENST00000586058 APLNQ9ULZ1 77 aa4.21□□□□□ -1.74
LIG3-206ENST00000586058 CMYA5Q8N3K9 4069 aa4.21□□□□□ -1.74
LIG3-206ENST00000586058 TIMM17BO60830 172 aa4.2□□□□□ -1.74
LIG3-206ENST00000586058 TSPEAR-AS2P59090 65 aa4.2□□□□□ -1.74
LIG3-206ENST00000586058 SPAG11BQ08648 103 aa4.2□□□□□ -1.74
LIG3-206ENST00000586058 COL5A1-AS1Q5SY13 56 aa4.2□□□□□ -1.74
LIG3-206ENST00000586058 C2orf91Q6ZV80 131 aa4.2□□□□□ -1.74
LIG3-206ENST00000586058 A0A0J9YXY3 114 aa4.19□□□□□ -1.74
LIG3-206ENST00000586058 IBA57-AS1B1ANH7 110 aa4.19□□□□□ -1.74
LIG3-206ENST00000586058 FOXI1Q12951 378 aa4.19□□□□□ -1.74
LIG3-206ENST00000586058 ENHOQ6UWT2 76 aa4.19□□□□□ -1.74
LIG3-206ENST00000586058 CEND1Q8N111 149 aa4.19□□□□□ -1.74
LIG3-206ENST00000586058 MAPKAPK5-AS1Q8N8E1 139 aa4.19□□□□□ -1.74
LIG3-206ENST00000586058 TP73-AS1Q9UF72 201 aa4.19□□□□□ -1.74
LIG3-206ENST00000586058 NOTCH1P46531 2555 aa4.19□□□□□ -1.74
LIG3-206ENST00000586058 NBEAL2Q6ZNJ1 2754 aa4.19□□□□□ -1.74
LIG3-206ENST00000586058 DNAH3Q8TD57 4116 aa4.18□□□□□ -1.74
LIG3-206ENST00000586058 TRAV16A0A0A6YYK6 109 aaPredicted RBP4.18□□□□□ -1.74
LIG3-206ENST00000586058 IFITM1P13164 125 aa4.18□□□□□ -1.74
LIG3-206ENST00000586058 LINC00158P58513 81 aa4.18□□□□□ -1.74
LIG3-206ENST00000586058 C14orf177Q52M58 125 aa4.18□□□□□ -1.74
LIG3-206ENST00000586058 ZNF625Q96I27 306 aaPredicted RBP4.18□□□□□ -1.74
LIG3-206ENST00000586058 CAMK2N2Q96S95 79 aa4.18□□□□□ -1.74
LIG3-206ENST00000586058 SPANXDQ9BXN6 97 aa4.18□□□□□ -1.74
LIG3-206ENST00000586058 KRTAP4-2Q9BYR5 136 aa4.18□□□□□ -1.74
LIG3-206ENST00000586058 SPANXCQ9NY87 97 aa4.18□□□□□ -1.74
LIG3-206ENST00000586058 PKIGQ9Y2B9 76 aa4.18□□□□□ -1.74
LIG3-206ENST00000586058 MGAM2Q2M2H8 2515 aa4.17□□□□□ -1.74
LIG3-206ENST00000586058 C3orf84H3BNL1 204 aa4.17□□□□□ -1.74
LIG3-206ENST00000586058 COX17Q14061 63 aa4.17□□□□□ -1.74
LIG3-206ENST00000586058 BVES-AS1Q5T3Y7 98 aa4.17□□□□□ -1.74
LIG3-206ENST00000586058 LYRM7Q5U5X0 104 aa4.17□□□□□ -1.74
LIG3-206ENST00000586058 RAB37Q96AX2 223 aa4.17□□□□□ -1.74
LIG3-206ENST00000586058 SNHG12Q9BXW3 62 aa4.17□□□□□ -1.74
LIG3-206ENST00000586058 NHP2Q9NX24 153 aaKnown RBP4.17□□□□□ -1.74
LIG3-206ENST00000586058 ERG28Q9UKR5 140 aa4.17□□□□□ -1.74
LIG3-206ENST00000586058 TENM3Q9P273 2699 aa4.16□□□□□ -1.74
LIG3-206ENST00000586058 TRBV30A0A0K0K1B3 111 aa4.16□□□□□ -1.74
LIG3-206ENST00000586058 SMIM13P0DJ93 91 aa4.16□□□□□ -1.74
LIG3-206ENST00000586058 PFN2P35080 140 aa4.16□□□□□ -1.74
LIG3-206ENST00000586058 Q1RN00 199 aa4.16□□□□□ -1.74
LIG3-206ENST00000586058 NBEAL1Q6ZS30 2694 aa4.15□□□□□ -1.74
LIG3-206ENST00000586058 A0A0U1RRA0 63 aa4.15□□□□□ -1.75
LIG3-206ENST00000586058 NBDYA0A0U1RRE5 68 aa4.15□□□□□ -1.75
LIG3-206ENST00000586058 NPC2P61916 151 aa4.15□□□□□ -1.75
LIG3-206ENST00000586058 HIGD2BQ4VC39 106 aa4.15□□□□□ -1.75
LIG3-206ENST00000586058 C2orf48Q96LS8 159 aa4.15□□□□□ -1.75
LIG3-206ENST00000586058 GVQW2A0A096LPI5 108 aaPredicted RBP4.14□□□□□ -1.75
LIG3-206ENST00000586058 USP17L23D6RBM5 183 aa4.14□□□□□ -1.75
LIG3-206ENST00000586058 LY6G6CO95867 125 aa4.14□□□□□ -1.75
LIG3-206ENST00000586058 FXYD2P54710 66 aa4.14□□□□□ -1.75
LIG3-206ENST00000586058 C2orf82Q6UX34 121 aa4.14□□□□□ -1.75
LIG3-206ENST00000586058 MUSTN1Q8IVN3 82 aa4.14□□□□□ -1.75
LIG3-206ENST00000586058 MIR7-3HGQ8N6C7 128 aa4.14□□□□□ -1.75
LIG3-206ENST00000586058 CARD19Q96LW7 228 aa4.14□□□□□ -1.75
LIG3-206ENST00000586058 PPDPFQ9H3Y8 114 aa4.14□□□□□ -1.75
LIG3-206ENST00000586058 A0A0B4J2C4 111 aa4.13□□□□□ -1.75
LIG3-206ENST00000586058 SYCNQ0VAF6 134 aa4.13□□□□□ -1.75
LIG3-206ENST00000586058 DAND5Q8N907 189 aa4.13□□□□□ -1.75
LIG3-206ENST00000586058 LINC00308Q8TCZ7 52 aa4.13□□□□□ -1.75
LIG3-206ENST00000586058 NTN5Q8WTR8 489 aaPredicted RBP4.13□□□□□ -1.75
LIG3-206ENST00000586058 TRAV13-2A0A0B4J235 113 aa4.12□□□□□ -1.75
LIG3-206ENST00000586058 KRTAP9-7A8MTY7 169 aa4.12□□□□□ -1.75
LIG3-206ENST00000586058 COX6CP09669 75 aa4.12□□□□□ -1.75
LIG3-206ENST00000586058 PSMB2P49721 201 aa4.12□□□□□ -1.75
LIG3-206ENST00000586058 RPL18AQ02543 176 aaKnown RBP4.12□□□□□ -1.75
LIG3-206ENST00000586058 KIAA0087Q14695 138 aa4.12□□□□□ -1.75
LIG3-206ENST00000586058 CASC10Q5T4H9 136 aa4.12□□□□□ -1.75
LIG3-206ENST00000586058 C15orf56Q8N910 161 aa4.12□□□□□ -1.75
LIG3-206ENST00000586058 LITAFQ99732 161 aa4.12□□□□□ -1.75
LIG3-206ENST00000586058 SND1-IT1Q9HBX3 110 aa4.12□□□□□ -1.75
LIG3-206ENST00000586058 PRO1854Q9UHT4 67 aa4.12□□□□□ -1.75
LIG3-206ENST00000586058 NDUFC2-KCTD14E9PQ53 114 aa4.11□□□□□ -1.75
LIG3-206ENST00000586058 FABP2P12104 132 aa4.11□□□□□ -1.75
LIG3-206ENST00000586058 RNF151Q2KHN1 245 aa4.11□□□□□ -1.75
LIG3-206ENST00000586058 UNQ6190/PRO20217Q6UXQ8 127 aa4.11□□□□□ -1.75
LIG3-206ENST00000586058 C6orf223Q8N319 242 aa4.11□□□□□ -1.75
LIG3-206ENST00000586058 LINC00476Q8WZB0 136 aa4.11□□□□□ -1.75
LIG3-206ENST00000586058 KRTAP4-11Q9BYQ6 195 aa4.11□□□□□ -1.75
LIG3-206ENST00000586058 LOC107984640A0A0U1RRK4 108 aa4.1□□□□□ -1.75
LIG3-206ENST00000586058 A0A1B0GWB2 263 aa4.1□□□□□ -1.75
LIG3-206ENST00000586058 C9orf118A6NHY6 69 aa4.1□□□□□ -1.75
LIG3-206ENST00000586058 H3BUT2 72 aa4.1□□□□□ -1.75
LIG3-206ENST00000586058 K7ERJ3 54 aa4.1□□□□□ -1.75
LIG3-206ENST00000586058 M0R2N4 97 aa4.1□□□□□ -1.75
LIG3-206ENST00000586058 RPL13AP40429 203 aaKnown RBP4.1□□□□□ -1.75
LIG3-206ENST00000586058 VAMP3Q15836 100 aa4.1□□□□□ -1.75
Retrieved 100 of 20,778 RNA–protein pairs in 161.3 ms