RNA–Protein interactions for RNA: ENST00000581711.1

SMCHD1-207, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 4

Gene SMCHD1, Length 546 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-207ENST00000581711 I3L2K1 104 aa-0.16□□□□□ -2.44
SMCHD1-207ENST00000581711 APOC3P02656 99 aa-0.16□□□□□ -2.44
SMCHD1-207ENST00000581711 TPPP2P59282 170 aa-0.16□□□□□ -2.44
SMCHD1-207ENST00000581711 BTG2P78543 158 aa-0.16□□□□□ -2.44
SMCHD1-207ENST00000581711 PIGYQ3MUY2 71 aa-0.16□□□□□ -2.44
SMCHD1-207ENST00000581711 Q56UQ5 140 aa-0.16□□□□□ -2.44
SMCHD1-207ENST00000581711 Q6JHZ5 121 aa-0.16□□□□□ -2.44
SMCHD1-207ENST00000581711 AMELXQ99217 191 aa-0.16□□□□□ -2.44
SMCHD1-207ENST00000581711 TSC22D3Q99576 134 aa-0.16□□□□□ -2.44
SMCHD1-207ENST00000581711 MGST2Q99735 147 aa-0.16□□□□□ -2.44
SMCHD1-207ENST00000581711 NDUFA4L2Q9NRX3 87 aa-0.16□□□□□ -2.44
SMCHD1-207ENST00000581711 GOLGA4Q13439 2230 aaKnown RBP-0.16□□□□□ -2.44
SMCHD1-207ENST00000581711 BTAF1O14981 1849 aa-0.16□□□□□ -2.44
SMCHD1-207ENST00000581711 NAIPQ13075 1403 aa-0.16□□□□□ -2.44
SMCHD1-207ENST00000581711 TRIOO75962 3097 aa-0.16□□□□□ -2.44
SMCHD1-207ENST00000581711 BCL9LQ86UU0 1499 aa-0.16□□□□□ -2.44
SMCHD1-207ENST00000581711 PAPPAQ13219 1627 aa-0.16□□□□□ -2.44
SMCHD1-207ENST00000581711 SPTBN5Q9NRC6 3674 aaKnown RBP-0.17□□□□□ -2.44
SMCHD1-207ENST00000581711 RIMS1Q86UR5 1692 aaKnown RBP-0.17□□□□□ -2.44
SMCHD1-207ENST00000581711 ALMS1Q8TCU4 4167 aa-0.17□□□□□ -2.44
SMCHD1-207ENST00000581711 PKHD1P08F94 4074 aa-0.17□□□□□ -2.44
SMCHD1-207ENST00000581711 LOC285095A0A1B0GVY8 99 aa-0.17□□□□□ -2.44
SMCHD1-207ENST00000581711 IGLC7A0M8Q6 106 aa-0.17□□□□□ -2.44
SMCHD1-207ENST00000581711 MIF4GDA9UHW6 222 aaKnown RBP-0.17□□□□□ -2.44
SMCHD1-207ENST00000581711 NDUFA2O43678 99 aa-0.17□□□□□ -2.44
SMCHD1-207ENST00000581711 TNFP01375 233 aa-0.17□□□□□ -2.44
SMCHD1-207ENST00000581711 IFNGP01579 166 aa-0.17□□□□□ -2.44
SMCHD1-207ENST00000581711 APOC2P02655 101 aa-0.17□□□□□ -2.44
SMCHD1-207ENST00000581711 PRM1P04553 51 aa-0.17□□□□□ -2.44
SMCHD1-207ENST00000581711 S100A12P80511 92 aa-0.17□□□□□ -2.44
SMCHD1-207ENST00000581711 CPSF1Q10570 1443 aaKnown RBP-0.17□□□□□ -2.44
SMCHD1-207ENST00000581711 KRTAP6-1Q3LI64 71 aa-0.17□□□□□ -2.44
SMCHD1-207ENST00000581711 TSLPQ969D9 159 aa-0.17□□□□□ -2.44
SMCHD1-207ENST00000581711 SPANXDQ9BXN6 97 aa-0.17□□□□□ -2.44
SMCHD1-207ENST00000581711 FAM107BQ9H098 131 aa-0.17□□□□□ -2.44
SMCHD1-207ENST00000581711 LINC00472Q9H8W2 130 aa-0.17□□□□□ -2.44
SMCHD1-207ENST00000581711 LINC01558Q9Y6Z2 57 aa-0.17□□□□□ -2.44
SMCHD1-207ENST00000581711 CHD7Q9P2D1 2997 aa-0.17□□□□□ -2.44
SMCHD1-207ENST00000581711 COL14A1Q05707 1796 aaKnown RBP-0.17□□□□□ -2.44
SMCHD1-207ENST00000581711 RAPGEF6Q8TEU7 1601 aa-0.17□□□□□ -2.44
SMCHD1-207ENST00000581711 ATMQ13315 3056 aa-0.17□□□□□ -2.44
SMCHD1-207ENST00000581711 LPAP08519 4548 aa-0.18□□□□□ -2.44
SMCHD1-207ENST00000581711 K7EP13 123 aa-0.18□□□□□ -2.44
SMCHD1-207ENST00000581711 HMGN4O00479 90 aa-0.18□□□□□ -2.44
SMCHD1-207ENST00000581711 SSSCA1O60232 199 aa-0.18□□□□□ -2.44
SMCHD1-207ENST00000581711 FGF7P21781 194 aa-0.18□□□□□ -2.44
SMCHD1-207ENST00000581711 CATR1Q13166 79 aa-0.18□□□□□ -2.44
SMCHD1-207ENST00000581711 C8orf59Q8N0T1 100 aaPredicted RBP-0.18□□□□□ -2.44
SMCHD1-207ENST00000581711 ZNF436-AS1Q8NC38 126 aaPredicted RBP-0.18□□□□□ -2.44
SMCHD1-207ENST00000581711 MYOZ3Q8TDC0 251 aa-0.18□□□□□ -2.44
SMCHD1-207ENST00000581711 MBD5Q9P267 1494 aa-0.18□□□□□ -2.44
SMCHD1-207ENST00000581711 SHANK2Q9UPX8 1470 aa-0.18□□□□□ -2.44
SMCHD1-207ENST00000581711 VPS13AQ96RL7 3174 aa-0.18□□□□□ -2.44
SMCHD1-207ENST00000581711 K7EQZ3 153 aa-0.19□□□□□ -2.44
SMCHD1-207ENST00000581711 SFT2D2O95562 160 aa-0.19□□□□□ -2.44
SMCHD1-207ENST00000581711 HMGN1P05114 100 aa-0.19□□□□□ -2.44
SMCHD1-207ENST00000581711 AKAIN1P0CW23 69 aa-0.19□□□□□ -2.44
SMCHD1-207ENST00000581711 COMMD6Q7Z4G1 85 aa-0.19□□□□□ -2.44
SMCHD1-207ENST00000581711 C5orf38Q86SI9 138 aa-0.19□□□□□ -2.44
SMCHD1-207ENST00000581711 C1orf54Q8WWF1 131 aa-0.19□□□□□ -2.44
SMCHD1-207ENST00000581711 WDR7Q9Y4E6 1490 aa-0.19□□□□□ -2.44
SMCHD1-207ENST00000581711 MYOM1P52179 1685 aa-0.19□□□□□ -2.44
SMCHD1-207ENST00000581711 ROBO1Q9Y6N7 1651 aa-0.19□□□□□ -2.44
SMCHD1-207ENST00000581711 FAT2Q9NYQ8 4349 aa-0.19□□□□□ -2.44
SMCHD1-207ENST00000581711 FLGP20930 4061 aaPredicted RBP-0.19□□□□□ -2.44
SMCHD1-207ENST00000581711 KTN1Q86UP2 1357 aaKnown RBP-0.19□□□□□ -2.44
SMCHD1-207ENST00000581711 POLA1P09884 1462 aaPredicted RBP-0.2□□□□□ -2.44
SMCHD1-207ENST00000581711 LOC100130705A0A1B0GUX0 176 aa-0.2□□□□□ -2.44
SMCHD1-207ENST00000581711 MGPP08493 103 aa-0.2□□□□□ -2.44
SMCHD1-207ENST00000581711 COX6B1P14854 86 aa-0.2□□□□□ -2.44
SMCHD1-207ENST00000581711 SPRR1BP22528 89 aa-0.2□□□□□ -2.44
SMCHD1-207ENST00000581711 MRPL54Q6P161 138 aaKnown RBP-0.2□□□□□ -2.44
SMCHD1-207ENST00000581711 FAIMQ9NVQ4 179 aa-0.2□□□□□ -2.44
SMCHD1-207ENST00000581711 UQCR10Q9UDW1 63 aa-0.2□□□□□ -2.44
SMCHD1-207ENST00000581711 CDH23Q9H251 3354 aa-0.2□□□□□ -2.44
SMCHD1-207ENST00000581711 ARHGEF12Q9NZN5 1544 aa-0.2□□□□□ -2.44
SMCHD1-207ENST00000581711 SHROOM2Q13796 1616 aa-0.2□□□□□ -2.44
SMCHD1-207ENST00000581711 QRICH2Q9H0J4 1663 aa-0.21□□□□□ -2.44
SMCHD1-207ENST00000581711 OOSP1A8MZH6 123 aa-0.21□□□□□ -2.44
SMCHD1-207ENST00000581711 LOC730098B7Z3J9 87 aa-0.21□□□□□ -2.44
SMCHD1-207ENST00000581711 CHKB-CPT1BH3BT56 60 aa-0.21□□□□□ -2.44
SMCHD1-207ENST00000581711 DEFB123Q8N688 67 aa-0.21□□□□□ -2.44
SMCHD1-207ENST00000581711 TMEM263Q8WUH6 116 aaKnown RBP-0.21□□□□□ -2.44
SMCHD1-207ENST00000581711 PP6455Q8WZ26 134 aa-0.21□□□□□ -2.44
SMCHD1-207ENST00000581711 NXT2Q9NPJ8 142 aaKnown RBP-0.21□□□□□ -2.44
SMCHD1-207ENST00000581711 LINC00474Q9P2X8 69 aa-0.21□□□□□ -2.44
SMCHD1-207ENST00000581711 URB1O60287 2271 aaKnown RBP-0.21□□□□□ -2.44
SMCHD1-207ENST00000581711 CUL7Q14999 1698 aa-0.21□□□□□ -2.44
SMCHD1-207ENST00000581711 NALCNQ8IZF0 1738 aa-0.21□□□□□ -2.44
SMCHD1-207ENST00000581711 SMG6Q86US8 1419 aaKnown RBP-0.21□□□□□ -2.44
SMCHD1-207ENST00000581711 VPS13BQ7Z7G8 4022 aa-0.22□□□□□ -2.44
SMCHD1-207ENST00000581711 A2ML1A8K2U0 1454 aa-0.22□□□□□ -2.44
SMCHD1-207ENST00000581711 ARHGEF5Q12774 1597 aa-0.22□□□□□ -2.44
SMCHD1-207ENST00000581711 PRUNE2Q8WUY3 3088 aa-0.22□□□□□ -2.44
SMCHD1-207ENST00000581711 UBE2L5PA0A1B0GUS4 154 aa-0.22□□□□□ -2.44
SMCHD1-207ENST00000581711 SPINK4O60575 86 aa-0.22□□□□□ -2.44
SMCHD1-207ENST00000581711 IGLC1P0CG04 106 aa-0.22□□□□□ -2.44
SMCHD1-207ENST00000581711 ATP5EP56381 51 aaPredicted RBP-0.22□□□□□ -2.44
SMCHD1-207ENST00000581711 UBA52P62987 128 aaKnown RBP-0.22□□□□□ -2.44
SMCHD1-207ENST00000581711 UBE2L3P68036 154 aaKnown RBP-0.22□□□□□ -2.44
Retrieved 100 of 20,778 RNA–protein pairs in 105.2 ms