RNA–Protein interactions for RNA: ENST00000581226.1

SMCHD1-204, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 3

Gene SMCHD1, Length 459 nt, Biotype retained intron, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-204ENST00000581226 TMEM203Q969S6 136 aa-0.51□□□□□ -2.49
SMCHD1-204ENST00000581226 FAIMQ9NVQ4 179 aa-0.51□□□□□ -2.49
SMCHD1-204ENST00000581226 PRO1854Q9UHT4 67 aa-0.51□□□□□ -2.49
SMCHD1-204ENST00000581226 DSTQ03001 7570 aaKnown RBP-0.52□□□□□ -2.49
SMCHD1-204ENST00000581226 ZFYVE16Q7Z3T8 1539 aa-0.52□□□□□ -2.49
SMCHD1-204ENST00000581226 TRBV7-4A0A0J9YYF1 115 aa-0.52□□□□□ -2.49
SMCHD1-204ENST00000581226 NAP1L6A6NFF2 107 aa-0.52□□□□□ -2.49
SMCHD1-204ENST00000581226 UBA52P62987 128 aaKnown RBP-0.52□□□□□ -2.49
SMCHD1-204ENST00000581226 WHAMMP3Q1A5X7 153 aa-0.52□□□□□ -2.49
SMCHD1-204ENST00000581226 FAM135AQ9P2D6 1515 aa-0.53□□□□□ -2.49
SMCHD1-204ENST00000581226 hADV29S1A0JD25 119 aa-0.53□□□□□ -2.49
SMCHD1-204ENST00000581226 H3BQ15 152 aa-0.53□□□□□ -2.49
SMCHD1-204ENST00000581226 SNCAP37840 140 aa-0.53□□□□□ -2.49
SMCHD1-204ENST00000581226 NLRP1Q9C000 1473 aa-0.54□□□□□ -2.5
SMCHD1-204ENST00000581226 A0A0G2JMZ2 1700 aa-0.54□□□□□ -2.5
SMCHD1-204ENST00000581226 COX6CP09669 75 aa-0.54□□□□□ -2.5
SMCHD1-204ENST00000581226 HSD52Q0P140 79 aa-0.54□□□□□ -2.5
SMCHD1-204ENST00000581226 PDZD2O15018 2839 aa-0.55□□□□□ -2.5
SMCHD1-204ENST00000581226 REV3LO60673 3130 aa-0.55□□□□□ -2.5
SMCHD1-204ENST00000581226 PLEKHH2Q8IVE3 1493 aa-0.55□□□□□ -2.5
SMCHD1-204ENST00000581226 A0A1B0GWA3 101 aa-0.56□□□□□ -2.5
SMCHD1-204ENST00000581226 TRAPPC2P0DI81 140 aa-0.56□□□□□ -2.5
SMCHD1-204ENST00000581226 TRAPPC2BP0DI82 140 aa-0.56□□□□□ -2.5
SMCHD1-204ENST00000581226 NBEAL1Q6ZS30 2694 aa-0.57□□□□□ -2.5
SMCHD1-204ENST00000581226 CRYM-AS1A6NIL9 109 aa-0.57□□□□□ -2.5
SMCHD1-204ENST00000581226 TMEM262E9PQX1 116 aa-0.57□□□□□ -2.5
SMCHD1-204ENST00000581226 SAA2P0DJI9 122 aaPredicted RBP-0.57□□□□□ -2.5
SMCHD1-204ENST00000581226 KLK9Q2XQG4 91 aa-0.57□□□□□ -2.5
SMCHD1-204ENST00000581226 FDCSPQ8NFU4 85 aa-0.57□□□□□ -2.5
SMCHD1-204ENST00000581226 LINC00846Q9NV44 126 aa-0.57□□□□□ -2.5
SMCHD1-204ENST00000581226 STAB2Q8WWQ8 2551 aa-0.57□□□□□ -2.5
SMCHD1-204ENST00000581226 PEG3Q9GZU2 1588 aa-0.57□□□□□ -2.5
SMCHD1-204ENST00000581226 KNDC1Q76NI1 1749 aa-0.58□□□□□ -2.5
SMCHD1-204ENST00000581226 SPRR2BP35325 72 aa-0.58□□□□□ -2.5
SMCHD1-204ENST00000581226 MRPS10P82664 201 aaKnown RBP-0.58□□□□□ -2.5
SMCHD1-204ENST00000581226 C12orf57Q99622 126 aa-0.58□□□□□ -2.5
SMCHD1-204ENST00000581226 CNOT1A5YKK6 2376 aaKnown RBP-0.59□□□□□ -2.5
SMCHD1-204ENST00000581226 TARBP1Q13395 1621 aaKnown RBP-0.59□□□□□ -2.5
SMCHD1-204ENST00000581226 A0A087WVE0 104 aa-0.59□□□□□ -2.5
SMCHD1-204ENST00000581226 PRO1933Q9H354 126 aa-0.59□□□□□ -2.5
SMCHD1-204ENST00000581226 SHPRHQ149N8 1683 aa-0.59□□□□□ -2.5
SMCHD1-204ENST00000581226 TGP01266 2768 aa-0.6□□□□□ -2.51
SMCHD1-204ENST00000581226 SETBP1Q9Y6X0 1596 aa-0.6□□□□□ -2.51
SMCHD1-204ENST00000581226 SEC11AP67812 179 aa-0.6□□□□□ -2.51
SMCHD1-204ENST00000581226 GTF2H5Q6ZYL4 71 aa-0.6□□□□□ -2.51
SMCHD1-204ENST00000581226 C20orf202A1L168 122 aa-0.61□□□□□ -2.51
SMCHD1-204ENST00000581226 SLIT1O75093 1534 aa-0.61□□□□□ -2.51
SMCHD1-204ENST00000581226 PRDM15P57071 1507 aaPredicted RBP-0.62□□□□□ -2.51
SMCHD1-204ENST00000581226 PKHD1P08F94 4074 aa-0.62□□□□□ -2.51
SMCHD1-204ENST00000581226 FLGP20930 4061 aaPredicted RBP-0.62□□□□□ -2.51
SMCHD1-204ENST00000581226 DEFB105AQ8NG35 78 aa-0.62□□□□□ -2.51
SMCHD1-204ENST00000581226 C14orf144Q96I85 54 aa-0.62□□□□□ -2.51
SMCHD1-204ENST00000581226 CGREF1Q99674 301 aa-0.62□□□□□ -2.51
SMCHD1-204ENST00000581226 SVEP1Q4LDE5 3571 aa-0.62□□□□□ -2.51
SMCHD1-204ENST00000581226 KIAA1551Q9HCM1 1747 aa-0.63□□□□□ -2.51
SMCHD1-204ENST00000581226 MUC12Q9UKN1 5478 aa-0.63□□□□□ -2.51
SMCHD1-204ENST00000581226 ASIPP42127 132 aa-0.63□□□□□ -2.51
SMCHD1-204ENST00000581226 KRTDAPP60985 99 aa-0.63□□□□□ -2.51
SMCHD1-204ENST00000581226 FXYD6Q9H0Q3 95 aa-0.63□□□□□ -2.51
SMCHD1-204ENST00000581226 CRIPTQ9P021 101 aa-0.63□□□□□ -2.51
SMCHD1-204ENST00000581226 C7orf77A4D0Y5 90 aa-0.64□□□□□ -2.51
SMCHD1-204ENST00000581226 H7BZZ5 65 aa-0.64□□□□□ -2.51
SMCHD1-204ENST00000581226 CACFD1Q9UGQ2 172 aa-0.64□□□□□ -2.51
SMCHD1-204ENST00000581226 A0A0G2JND7 137 aa-0.65□□□□□ -2.51
SMCHD1-204ENST00000581226 MT-ATP8P03928 68 aa-0.65□□□□□ -2.51
SMCHD1-204ENST00000581226 MON2Q7Z3U7 1717 aa-0.65□□□□□ -2.51
SMCHD1-204ENST00000581226 NKTRP30414 1462 aaKnown RBP-0.66□□□□□ -2.51
SMCHD1-204ENST00000581226 MLH3Q9UHC1 1453 aa-0.66□□□□□ -2.51
SMCHD1-204ENST00000581226 GNGT2O14610 69 aa-0.66□□□□□ -2.52
SMCHD1-204ENST00000581226 NRXN1Q9ULB1 1477 aa-0.67□□□□□ -2.52
SMCHD1-204ENST00000581226 TRBV25-1A0A075B6N4 114 aa-0.67□□□□□ -2.52
SMCHD1-204ENST00000581226 A0A1B0GU69 56 aa-0.67□□□□□ -2.52
SMCHD1-204ENST00000581226 SPINK4O60575 86 aa-0.67□□□□□ -2.52
SMCHD1-204ENST00000581226 S100PP25815 95 aa-0.67□□□□□ -2.52
SMCHD1-204ENST00000581226 IQSEC2Q5JU85 1478 aa-0.67□□□□□ -2.52
SMCHD1-204ENST00000581226 PCNX1Q96RV3 2341 aa-0.67□□□□□ -2.52
SMCHD1-204ENST00000581226 ANKRD36BQ8N2N9 1353 aa-0.68□□□□□ -2.52
SMCHD1-204ENST00000581226 LOC730098B7Z3J9 87 aa-0.68□□□□□ -2.52
SMCHD1-204ENST00000581226 C6orf201Q7Z4U5 140 aa-0.68□□□□□ -2.52
SMCHD1-204ENST00000581226 DEFB107AQ8IZN7 70 aa-0.68□□□□□ -2.52
SMCHD1-204ENST00000581226 USMG5Q96IX5 58 aa-0.68□□□□□ -2.52
SMCHD1-204ENST00000581226 APLNQ9ULZ1 77 aa-0.68□□□□□ -2.52
SMCHD1-204ENST00000581226 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP-0.69□□□□□ -2.522e-11■■■■■ 63.5
SMCHD1-204ENST00000581226 SETD2Q9BYW2 2564 aaPredicted RBP-0.69□□□□□ -2.52
SMCHD1-204ENST00000581226 EDC4Q6P2E9 1401 aaKnown RBP-0.69□□□□□ -2.52
SMCHD1-204ENST00000581226 C5P01031 1676 aa-0.69□□□□□ -2.52
SMCHD1-204ENST00000581226 KNL1Q8NG31 2342 aa-0.7□□□□□ -2.52
SMCHD1-204ENST00000581226 TRANK1O15050 2925 aa-0.7□□□□□ -2.52
SMCHD1-204ENST00000581226 CPSF4LA6NMK7 179 aaKnown RBP-0.7□□□□□ -2.52
SMCHD1-204ENST00000581226 ATP6V1G2-DDX39BF2Z307 99 aa-0.7□□□□□ -2.52
SMCHD1-204ENST00000581226 SYS1-DBNDD2H3BUS1 97 aa-0.7□□□□□ -2.52
SMCHD1-204ENST00000581226 M0R2T5 61 aa-0.7□□□□□ -2.52
SMCHD1-204ENST00000581226 COX8AP10176 69 aa-0.7□□□□□ -2.52
SMCHD1-204ENST00000581226 KRTAP19-7Q3SYF9 63 aa-0.7□□□□□ -2.52
SMCHD1-204ENST00000581226 LRRC37AA6NMS7 1700 aa-0.7□□□□□ -2.52
SMCHD1-204ENST00000581226 NF1P21359 2839 aa-0.71□□□□□ -2.52
SMCHD1-204ENST00000581226 AKAP13Q12802 2813 aa-0.71□□□□□ -2.52
SMCHD1-204ENST00000581226 MYH4Q9Y623 1939 aa-0.71□□□□□ -2.52
SMCHD1-204ENST00000581226 TMEM218A2RU14 115 aa-0.71□□□□□ -2.52
SMCHD1-204ENST00000581226 H0Y9P7 68 aa-0.71□□□□□ -2.52
Retrieved 100 of 20,778 RNA–protein pairs in 102.1 ms