RNA–Protein interactions for RNA: ENST00000580751.5

SS18-216, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 4

Gene SS18, Length 547 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-216ENST00000580751 TSTD3H0UI37 97 aa10.18□□□□□ -0.78
SS18-216ENST00000580751 Q8IZM0 81 aa10.18□□□□□ -0.78
SS18-216ENST00000580751 CXCL5P42830 114 aa10.17□□□□□ -0.78
SS18-216ENST00000580751 SLC25A34Q6PIV7 304 aa10.17□□□□□ -0.78
SS18-216ENST00000580751 BOD1L2Q8IYS8 172 aa10.17□□□□□ -0.78
SS18-216ENST00000580751 UQCR10Q9UDW1 63 aa10.17□□□□□ -0.78
SS18-216ENST00000580751 IGLV2-33A0A075B6J2 118 aaPredicted RBP10.16□□□□□ -0.78
SS18-216ENST00000580751 IGLV5-52A0A0A0MRZ9 124 aa10.16□□□□□ -0.78
SS18-216ENST00000580751 C16orf90A8MZG2 172 aa10.16□□□□□ -0.78
SS18-216ENST00000580751 PRSS2P07478 247 aa10.16□□□□□ -0.78
SS18-216ENST00000580751 COX7B2Q8TF08 81 aa10.16□□□□□ -0.78
SS18-216ENST00000580751 MYMXA0A1B0GTQ4 84 aa10.15□□□□□ -0.78
SS18-216ENST00000580751 HERV-K104P63124 156 aa10.15□□□□□ -0.78
SS18-216ENST00000580751 C15orf56Q8N910 161 aa10.15□□□□□ -0.78
SS18-216ENST00000580751 ORAOV1Q8WV07 137 aa10.15□□□□□ -0.78
SS18-216ENST00000580751 MIEN1Q9BRT3 115 aa10.15□□□□□ -0.78
SS18-216ENST00000580751 GVQW2A0A096LPI5 108 aaPredicted RBP10.14□□□□□ -0.79
SS18-216ENST00000580751 LINC00587B1AMM8 73 aa10.14□□□□□ -0.79
SS18-216ENST00000580751 NDUFA1O15239 70 aa10.14□□□□□ -0.79
SS18-216ENST00000580751 C6orf226Q5I0X4 101 aa10.14□□□□□ -0.79
SS18-216ENST00000580751 NDUFA12Q9UI09 145 aa10.14□□□□□ -0.79
SS18-216ENST00000580751 ZNF815PA8K554 130 aa10.13□□□□□ -0.79
SS18-216ENST00000580751 TSPEAR-AS2P59090 65 aa10.13□□□□□ -0.79
SS18-216ENST00000580751 KIAA0087Q14695 138 aa10.13□□□□□ -0.79
SS18-216ENST00000580751 PCP2Q8IVA1 136 aa10.13□□□□□ -0.79
SS18-216ENST00000580751 C14orf144Q96I85 54 aa10.13□□□□□ -0.79
SS18-216ENST00000580751 C2orf48Q96LS8 159 aa10.13□□□□□ -0.79
SS18-216ENST00000580751 DNAH5Q8TE73 4624 aa10.13□□□□□ -0.79
SS18-216ENST00000580751 FUSP35637 526 aaKnown RBP eCLIP10.12□□□□□ -0.79
SS18-216ENST00000580751 SPAG11BQ08648 103 aa10.12□□□□□ -0.79
SS18-216ENST00000580751 ZNF625Q96I27 306 aaPredicted RBP10.12□□□□□ -0.79
SS18-216ENST00000580751 ZNF561-AS1K7EIQ3 104 aa10.11□□□□□ -0.79
SS18-216ENST00000580751 CKS1BP61024 79 aa10.11□□□□□ -0.79
SS18-216ENST00000580751 HIGD2BQ4VC39 106 aa10.11□□□□□ -0.79
SS18-216ENST00000580751 TOMM7Q9P0U1 55 aa10.11□□□□□ -0.79
SS18-216ENST00000580751 HIGD1BQ9P298 99 aa10.11□□□□□ -0.79
SS18-216ENST00000580751 DYNC1H1Q14204 4646 aaKnown RBP10.11□□□□□ -0.79
SS18-216ENST00000580751 BIRC6Q9NR09 4857 aa10.1□□□□□ -0.79
SS18-216ENST00000580751 GCSHP23434 173 aa10.1□□□□□ -0.79
SS18-216ENST00000580751 CNBPP62633 177 aaKnown RBP10.1□□□□□ -0.79
SS18-216ENST00000580751 TRAV16A0A0A6YYK6 109 aaPredicted RBP10.09□□□□□ -0.79
SS18-216ENST00000580751 TIMM17BO60830 172 aa10.09□□□□□ -0.79
SS18-216ENST00000580751 PRO1933Q9H354 126 aa10.09□□□□□ -0.79
SS18-216ENST00000580751 CIRBPQ14011 172 aaKnown RBP10.08□□□□□ -0.8
SS18-216ENST00000580751 SCGB1D4Q6XE38 83 aa10.08□□□□□ -0.8
SS18-216ENST00000580751 A0A0J9YXY3 114 aa10.07□□□□□ -0.8
SS18-216ENST00000580751 COX17Q14061 63 aa10.07□□□□□ -0.8
SS18-216ENST00000580751 Q6ZVH6 145 aa10.07□□□□□ -0.8
SS18-216ENST00000580751 KRTAP3-3Q9BYR6 98 aa10.07□□□□□ -0.8
SS18-216ENST00000580751 KRTAP3-2Q9BYR7 98 aa10.07□□□□□ -0.8
SS18-216ENST00000580751 TTTY13Q9BZ97 58 aa10.07□□□□□ -0.8
SS18-216ENST00000580751 LRP1BQ9NZR2 4599 aa10.07□□□□□ -0.8
SS18-216ENST00000580751 TRBV30A0A0K0K1B3 111 aa10.06□□□□□ -0.8
SS18-216ENST00000580751 RNF151Q2KHN1 245 aa10.06□□□□□ -0.8
SS18-216ENST00000580751 TMEM238C9JI98 176 aa10.05□□□□□ -0.8
SS18-216ENST00000580751 HNRNPA3P51991 378 aaKnown RBP10.05□□□□□ -0.8
SS18-216ENST00000580751 C9orf163Q8N9P6 203 aa10.05□□□□□ -0.8
SS18-216ENST00000580751 SPANXB1Q9NS25 103 aaPredicted RBP10.05□□□□□ -0.8
SS18-216ENST00000580751 SLPIP03973 132 aa10.04□□□□□ -0.8
SS18-216ENST00000580751 DDTP30046 118 aa10.04□□□□□ -0.8
SS18-216ENST00000580751 KRTAP10-1P60331 282 aa10.04□□□□□ -0.8
SS18-216ENST00000580751 TAL2Q16559 108 aa10.04□□□□□ -0.8
SS18-216ENST00000580751 LINC00526Q96FQ7 95 aa10.04□□□□□ -0.8
SS18-216ENST00000580751 CAMK2N2Q96S95 79 aa10.04□□□□□ -0.8
SS18-216ENST00000580751 PPDPFQ9H3Y8 114 aa10.04□□□□□ -0.8
SS18-216ENST00000580751 SYCNQ0VAF6 134 aa10.03□□□□□ -0.8
SS18-216ENST00000580751 LINC01620Q4KN68 170 aa10.03□□□□□ -0.8
SS18-216ENST00000580751 C2orf91Q6ZV80 131 aa10.03□□□□□ -0.8
SS18-216ENST00000580751 COPS9Q8WXC6 57 aa10.03□□□□□ -0.8
SS18-216ENST00000580751 CARD19Q96LW7 228 aa10.03□□□□□ -0.8
SS18-216ENST00000580751 C2orf82Q6UX34 121 aa10.02□□□□□ -0.81
SS18-216ENST00000580751 ERG28Q9UKR5 140 aa10.02□□□□□ -0.81
SS18-216ENST00000580751 PKIGQ9Y2B9 76 aa10.02□□□□□ -0.81
SS18-216ENST00000580751 PTTG1IPP53801 180 aa10.01□□□□□ -0.81
SS18-216ENST00000580751 MEIG1Q5JSS6 88 aa10.01□□□□□ -0.81
SS18-216ENST00000580751 UNQ6190/PRO20217Q6UXQ8 127 aa10.01□□□□□ -0.81
SS18-216ENST00000580751 SPANXDQ9BXN6 97 aa10.01□□□□□ -0.81
SS18-216ENST00000580751 SPANXCQ9NY87 97 aa10.01□□□□□ -0.81
SS18-216ENST00000580751 IFITM1P13164 125 aa10□□□□□ -0.81
SS18-216ENST00000580751 HSD52Q0P140 79 aa10□□□□□ -0.81
SS18-216ENST00000580751 LITAFQ99732 161 aa10□□□□□ -0.81
SS18-216ENST00000580751 TP73-AS1Q9UF72 201 aa10□□□□□ -0.81
SS18-216ENST00000580751 CDK2AP2O75956 126 aa9.99□□□□□ -0.81
SS18-216ENST00000580751 Q6ZRU5 148 aa9.99□□□□□ -0.81
SS18-216ENST00000580751 TLX1NBP0CAT3 122 aa9.98□□□□□ -0.81
SS18-216ENST00000580751 SRSF9Q13242 221 aaKnown RBP eCLIP9.98□□□□□ -0.81
SS18-216ENST00000580751 SDIM1Q6ZPB5 146 aa9.98□□□□□ -0.81
SS18-216ENST00000580751 C6orf48Q9UBA6 75 aa9.98□□□□□ -0.81
SS18-216ENST00000580751 LINC00158P58513 81 aa9.97□□□□□ -0.81
SS18-216ENST00000580751 C10orf25Q5T742 122 aa9.97□□□□□ -0.81
SS18-216ENST00000580751 Q6ZSA8 131 aa9.97□□□□□ -0.81
SS18-216ENST00000580751 HIST1H4GQ99525 98 aa9.97□□□□□ -0.81
SS18-216ENST00000580751 KIAA1109Q2LD37 5005 aa9.96□□□□□ -0.81
SS18-216ENST00000580751 APOBP04114 4563 aaKnown RBP9.96□□□□□ -0.81
SS18-216ENST00000580751 LOC107984156A0A0G2JMH3 177 aa9.96□□□□□ -0.82
SS18-216ENST00000580751 NDUFC2-KCTD14E9PQ53 114 aa9.96□□□□□ -0.82
SS18-216ENST00000580751 M0R143 59 aa9.96□□□□□ -0.82
SS18-216ENST00000580751 SMIM13P0DJ93 91 aa9.96□□□□□ -0.82
SS18-216ENST00000580751 ARL17AQ8IVW1 177 aa9.96□□□□□ -0.82
SS18-216ENST00000580751 CTAG1AP78358 180 aa9.95□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 84.8 ms