RNA–Protein interactions for RNA: ENST00000572665.1

CIITA-208, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 5

Gene CIITA, Length 560 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-208ENST00000572665 S100A8P05109 93 aa5.73□□□□□ -1.49
CIITA-208ENST00000572665 LINC00526Q96FQ7 95 aa5.73□□□□□ -1.49
CIITA-208ENST00000572665 IMMP2LQ96T52 175 aa5.73□□□□□ -1.49
CIITA-208ENST00000572665 C20orf78Q9BR46 151 aa5.73□□□□□ -1.49
CIITA-208ENST00000572665 TIMM21Q9BVV7 248 aa5.73□□□□□ -1.49
CIITA-208ENST00000572665 UBE2D4Q9Y2X8 147 aa5.73□□□□□ -1.49
CIITA-208ENST00000572665 TRAV13-1A0A0B4J241 112 aa5.72□□□□□ -1.49
CIITA-208ENST00000572665 MT-ND6P03923 174 aa5.72□□□□□ -1.49
CIITA-208ENST00000572665 RPL18AQ02543 176 aaKnown RBP5.72□□□□□ -1.49
CIITA-208ENST00000572665 RHEBQ15382 184 aa5.72□□□□□ -1.49
CIITA-208ENST00000572665 ATP5L2Q7Z4Y8 100 aa5.72□□□□□ -1.49
CIITA-208ENST00000572665 OR10D4PQ8NGN7 298 aa5.72□□□□□ -1.49
CIITA-208ENST00000572665 GAS8-AS1O95177 125 aa5.71□□□□□ -1.5
CIITA-208ENST00000572665 CKS2P33552 79 aa5.71□□□□□ -1.5
CIITA-208ENST00000572665 RPL32P62910 135 aaKnown RBP5.71□□□□□ -1.5
CIITA-208ENST00000572665 HBBP68871 147 aa5.71□□□□□ -1.5
CIITA-208ENST00000572665 SPAG11BQ08648 103 aa5.71□□□□□ -1.5
CIITA-208ENST00000572665 TRBV24-1A0A075B6N3 115 aa5.7□□□□□ -1.5
CIITA-208ENST00000572665 TRAV9-1A0A075B6T8 112 aa5.7□□□□□ -1.5
CIITA-208ENST00000572665 SMKR1H3BMG3 65 aa5.7□□□□□ -1.5
CIITA-208ENST00000572665 FAM104BQ5XKR9 115 aa5.7□□□□□ -1.5
CIITA-208ENST00000572665 MRPL54Q6P161 138 aaKnown RBP5.7□□□□□ -1.5
CIITA-208ENST00000572665 C5orf38Q86SI9 138 aa5.7□□□□□ -1.5
CIITA-208ENST00000572665 SVBPQ8N300 66 aa5.7□□□□□ -1.5
CIITA-208ENST00000572665 SPANXA1Q9NS26 97 aa5.7□□□□□ -1.5
CIITA-208ENST00000572665 NDUFA1O15239 70 aa5.69□□□□□ -1.5
CIITA-208ENST00000572665 APOC3P02656 99 aa5.69□□□□□ -1.5
CIITA-208ENST00000572665 PPBPP02775 128 aa5.69□□□□□ -1.5
CIITA-208ENST00000572665 KRTAP10-8P60410 259 aa5.69□□□□□ -1.5
CIITA-208ENST00000572665 NDUFA5Q16718 116 aa5.69□□□□□ -1.5
CIITA-208ENST00000572665 MRPL51Q4U2R6 128 aaKnown RBP5.69□□□□□ -1.5
CIITA-208ENST00000572665 C9orf116Q5BN46 136 aaPredicted RBP5.69□□□□□ -1.5
CIITA-208ENST00000572665 SLC7A5P1Q8MH63 180 aa5.69□□□□□ -1.5
CIITA-208ENST00000572665 MRPL35Q9NZE8 188 aaKnown RBP5.69□□□□□ -1.5
CIITA-208ENST00000572665 HMCN2Q8NDA2 5059 aa5.69□□□□□ -1.5
CIITA-208ENST00000572665 TGIF2-C20orf24A0A0A6YYL0 155 aa5.68□□□□□ -1.5
CIITA-208ENST00000572665 NDUFAF8A1L188 74 aa5.68□□□□□ -1.5
CIITA-208ENST00000572665 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP5.68□□□□□ -1.5
CIITA-208ENST00000572665 SNAPINO95295 136 aa5.68□□□□□ -1.5
CIITA-208ENST00000572665 RAB5AP20339 215 aa5.68□□□□□ -1.5
CIITA-208ENST00000572665 MRPS36P82909 103 aaKnown RBP5.68□□□□□ -1.5
CIITA-208ENST00000572665 RNASE13Q5GAN3 156 aaKnown RBP5.68□□□□□ -1.5
CIITA-208ENST00000572665 C1orf137Q5JT78 98 aa5.68□□□□□ -1.5
CIITA-208ENST00000572665 Q6ZUT4 128 aa5.68□□□□□ -1.5
CIITA-208ENST00000572665 ORAOV1Q8WV07 137 aa5.68□□□□□ -1.5
CIITA-208ENST00000572665 DIRC1Q969H9 104 aa5.68□□□□□ -1.5
CIITA-208ENST00000572665 RPS10P5Q9NQ39 176 aa5.68□□□□□ -1.5
CIITA-208ENST00000572665 A0A1W2PNN7 141 aa5.67□□□□□ -1.5
CIITA-208ENST00000572665 IFI27P40305 119 aaPredicted RBP5.67□□□□□ -1.5
CIITA-208ENST00000572665 KRTAP7-1Q8IUC3 87 aa5.67□□□□□ -1.5
CIITA-208ENST00000572665 SMIM2Q9BVW6 85 aa5.67□□□□□ -1.5
CIITA-208ENST00000572665 PSORS1C2Q9UIG4 136 aa5.67□□□□□ -1.5
CIITA-208ENST00000572665 TLX1NBP0CAT3 122 aa5.66□□□□□ -1.5
CIITA-208ENST00000572665 S100PP25815 95 aa5.66□□□□□ -1.5
CIITA-208ENST00000572665 TMEM136Q6ZRR5 245 aa5.66□□□□□ -1.5
CIITA-208ENST00000572665 Q8NBF4 154 aa5.66□□□□□ -1.5
CIITA-208ENST00000572665 IGHV3OR16-9A0A0B4J2B5 98 aa5.65□□□□□ -1.5
CIITA-208ENST00000572665 D6R8Y8 96 aa5.65□□□□□ -1.5
CIITA-208ENST00000572665 PHF5AQ7RTV0 110 aaKnown RBP5.65□□□□□ -1.5
CIITA-208ENST00000572665 ORMDL3Q8N138 153 aa5.65□□□□□ -1.5
CIITA-208ENST00000572665 YPEL4Q96NS1 127 aa5.65□□□□□ -1.5
CIITA-208ENST00000572665 TRBV30A0A0K0K1B3 111 aa5.64□□□□□ -1.51
CIITA-208ENST00000572665 IGLV7-43P04211 117 aa5.64□□□□□ -1.51
CIITA-208ENST00000572665 RPL39P62891 51 aaKnown RBP5.64□□□□□ -1.51
CIITA-208ENST00000572665 Q6ZN92 141 aa5.64□□□□□ -1.51
CIITA-208ENST00000572665 PACRGQ96M98 296 aaPredicted RBP5.64□□□□□ -1.51
CIITA-208ENST00000572665 C2orf88Q9BSF0 95 aa5.64□□□□□ -1.51
CIITA-208ENST00000572665 GNB1LQ9BYB4 327 aa5.64□□□□□ -1.51
CIITA-208ENST00000572665 LAMTOR2Q9Y2Q5 125 aa5.64□□□□□ -1.51
CIITA-208ENST00000572665 NPYP01303 97 aa5.63□□□□□ -1.51
CIITA-208ENST00000572665 UBE2BP63146 152 aa5.63□□□□□ -1.51
CIITA-208ENST00000572665 COX19Q49B96 90 aa5.63□□□□□ -1.51
CIITA-208ENST00000572665 TEX43Q6ZNM6 134 aa5.63□□□□□ -1.51
CIITA-208ENST00000572665 LINC01561Q8N1V8 128 aa5.63□□□□□ -1.51
CIITA-208ENST00000572665 TMEM141Q96I45 108 aa5.63□□□□□ -1.51
CIITA-208ENST00000572665 UBR4Q5T4S7 5183 aa5.62□□□□□ -1.51
CIITA-208ENST00000572665 IGLV1-50A0A075B6I6 118 aa5.62□□□□□ -1.51
CIITA-208ENST00000572665 H0Y9J4 135 aa5.62□□□□□ -1.51
CIITA-208ENST00000572665 G0S2P27469 103 aa5.62□□□□□ -1.51
CIITA-208ENST00000572665 RPL13AP40429 203 aaKnown RBP5.62□□□□□ -1.51
CIITA-208ENST00000572665 UBE2D1P51668 147 aa5.62□□□□□ -1.51
CIITA-208ENST00000572665 FAM19A5Q7Z5A7 132 aaPredicted RBP5.62□□□□□ -1.51
CIITA-208ENST00000572665 PRELID3AQ96N28 172 aa5.62□□□□□ -1.51
CIITA-208ENST00000572665 MAP1LC3AQ9H492 121 aa5.62□□□□□ -1.51
CIITA-208ENST00000572665 NDUFC2-KCTD14E9PQ53 114 aa5.61□□□□□ -1.51
CIITA-208ENST00000572665 K7EMI3 77 aa5.61□□□□□ -1.51
CIITA-208ENST00000572665 M0QXV9 152 aa5.61□□□□□ -1.51
CIITA-208ENST00000572665 UNQ6190/PRO20217Q6UXQ8 127 aa5.61□□□□□ -1.51
CIITA-208ENST00000572665 CBLN2Q8IUK8 224 aa5.61□□□□□ -1.51
CIITA-208ENST00000572665 C6orf48Q9UBA6 75 aa5.61□□□□□ -1.51
CIITA-208ENST00000572665 CYSLTR1Q9Y271 337 aa5.61□□□□□ -1.51
CIITA-208ENST00000572665 TNXBP22105 4242 aa5.6□□□□□ -1.51
CIITA-208ENST00000572665 CKS1BP61024 79 aa5.6□□□□□ -1.51
CIITA-208ENST00000572665 SEC11AP67812 179 aa5.6□□□□□ -1.51
CIITA-208ENST00000572665 ORMDL2Q53FV1 153 aa5.6□□□□□ -1.51
CIITA-208ENST00000572665 LINC00242Q5T6M2 205 aa5.6□□□□□ -1.51
CIITA-208ENST00000572665 SMCO4Q9NRQ5 59 aa5.6□□□□□ -1.51
CIITA-208ENST00000572665 IGLV4-3A0A075B6K6 122 aa5.59□□□□□ -1.51
CIITA-208ENST00000572665 FAM168BA1KXE4 195 aa5.59□□□□□ -1.51
CIITA-208ENST00000572665 KRTAP16-1A8MUX0 517 aa5.59□□□□□ -1.51
Retrieved 100 of 20,778 RNA–protein pairs in 54.6 ms