RNA–Protein interactions for RNA: ENST00000570771.1

VPS53-209, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 366 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-209ENST00000570771 PSCAO43653 123 aa4.3□□□□□ -1.72
VPS53-209ENST00000570771 COX6A2Q02221 97 aa4.3□□□□□ -1.72
VPS53-209ENST00000570771 SFTA2Q6UW10 78 aa4.3□□□□□ -1.72
VPS53-209ENST00000570771 C12orf57Q99622 126 aa4.3□□□□□ -1.72
VPS53-209ENST00000570771 IGHV1-58A0A0C4DH39 117 aa4.29□□□□□ -1.72
VPS53-209ENST00000570771 hDV102S1A0JD36 115 aa4.29□□□□□ -1.72
VPS53-209ENST00000570771 E9PLD3 99 aa4.29□□□□□ -1.72
VPS53-209ENST00000570771 LEPROTO15243 131 aa4.29□□□□□ -1.72
VPS53-209ENST00000570771 RTL8CO15255 209 aa4.29□□□□□ -1.72
VPS53-209ENST00000570771 PRSS2P07478 247 aa4.29□□□□□ -1.72
VPS53-209ENST00000570771 LGALS3P17931 250 aaKnown RBP4.29□□□□□ -1.72
VPS53-209ENST00000570771 FOXI1Q12951 378 aa4.29□□□□□ -1.72
VPS53-209ENST00000570771 SPATA45Q537H7 98 aa4.29□□□□□ -1.72
VPS53-209ENST00000570771 Q6ZRN7 208 aaPredicted RBP4.29□□□□□ -1.72
VPS53-209ENST00000570771 C5orf38Q86SI9 138 aa4.29□□□□□ -1.72
VPS53-209ENST00000570771 PAM16Q9Y3D7 125 aa4.29□□□□□ -1.72
VPS53-209ENST00000570771 RYR1P21817 5038 aa4.29□□□□□ -1.72
VPS53-209ENST00000570771 KIAA1109Q2LD37 5005 aa4.28□□□□□ -1.72
VPS53-209ENST00000570771 SMIM1B2RUZ4 78 aa4.28□□□□□ -1.72
VPS53-209ENST00000570771 F8WDY8 70 aa4.28□□□□□ -1.72
VPS53-209ENST00000570771 SPINK8P0C7L1 97 aa4.28□□□□□ -1.72
VPS53-209ENST00000570771 CXCL5P42830 114 aa4.28□□□□□ -1.72
VPS53-209ENST00000570771 NMUP48645 174 aa4.28□□□□□ -1.72
VPS53-209ENST00000570771 WFDC2Q14508 124 aa4.28□□□□□ -1.72
VPS53-209ENST00000570771 C14orf177Q52M58 125 aa4.28□□□□□ -1.72
VPS53-209ENST00000570771 LINC00518Q8N0U6 118 aa4.28□□□□□ -1.72
VPS53-209ENST00000570771 STPG4Q8N801 248 aa4.28□□□□□ -1.72
VPS53-209ENST00000570771 IGHV3-64A0A075B6Q5 118 aa4.27□□□□□ -1.73
VPS53-209ENST00000570771 IGLV5-39A0A0G2JS06 123 aa4.27□□□□□ -1.73
VPS53-209ENST00000570771 MYMXA0A1B0GTQ4 84 aa4.27□□□□□ -1.73
VPS53-209ENST00000570771 TSTD3H0UI37 97 aa4.27□□□□□ -1.73
VPS53-209ENST00000570771 J3QQQ9 107 aa4.27□□□□□ -1.73
VPS53-209ENST00000570771 ZNF561-AS1K7EIQ3 104 aa4.27□□□□□ -1.73
VPS53-209ENST00000570771 FUSP35637 526 aaKnown RBP eCLIP4.27□□□□□ -1.73
VPS53-209ENST00000570771 ANKRD39Q53RE8 183 aa4.27□□□□□ -1.73
VPS53-209ENST00000570771 C6orf226Q5I0X4 101 aa4.27□□□□□ -1.73
VPS53-209ENST00000570771 C1orf134Q5TEV5 83 aa4.27□□□□□ -1.73
VPS53-209ENST00000570771 Q8IZM0 81 aa4.27□□□□□ -1.73
VPS53-209ENST00000570771 C6orf223Q8N319 242 aa4.27□□□□□ -1.73
VPS53-209ENST00000570771 MAPKAPK5-AS1Q8N8E1 139 aa4.27□□□□□ -1.73
VPS53-209ENST00000570771 COX7B2Q8TF08 81 aa4.27□□□□□ -1.73
VPS53-209ENST00000570771 ORAOV1Q8WV07 137 aa4.27□□□□□ -1.73
VPS53-209ENST00000570771 TOMM7Q9P0U1 55 aa4.27□□□□□ -1.73
VPS53-209ENST00000570771 HERC2O95714 4834 aa4.27□□□□□ -1.73
VPS53-209ENST00000570771 HSPG2P98160 4391 aa4.26□□□□□ -1.73
VPS53-209ENST00000570771 ZNF815PA8K554 130 aa4.26□□□□□ -1.73
VPS53-209ENST00000570771 LINC00587B1AMM8 73 aa4.26□□□□□ -1.73
VPS53-209ENST00000570771 COX8AP10176 69 aa4.26□□□□□ -1.73
VPS53-209ENST00000570771 CKS1BP61024 79 aa4.26□□□□□ -1.73
VPS53-209ENST00000570771 HERV-K104P63124 156 aa4.26□□□□□ -1.73
VPS53-209ENST00000570771 SPAG11BQ08648 103 aa4.26□□□□□ -1.73
VPS53-209ENST00000570771 MAJINQ3KP22 176 aa4.26□□□□□ -1.73
VPS53-209ENST00000570771 KRTAP26-1Q6PEX3 210 aa4.26□□□□□ -1.73
VPS53-209ENST00000570771 SLC25A34Q6PIV7 304 aa4.26□□□□□ -1.73
VPS53-209ENST00000570771 NDUFA12Q9UI09 145 aa4.26□□□□□ -1.73
VPS53-209ENST00000570771 FAT1Q14517 4588 aa4.26□□□□□ -1.73
VPS53-209ENST00000570771 EREGO14944 169 aa4.25□□□□□ -1.73
VPS53-209ENST00000570771 NDUFA1O15239 70 aa4.25□□□□□ -1.73
VPS53-209ENST00000570771 DLEU1O43261 78 aa4.25□□□□□ -1.73
VPS53-209ENST00000570771 GCSHP23434 173 aa4.25□□□□□ -1.73
VPS53-209ENST00000570771 CIRBPQ14011 172 aaKnown RBP4.25□□□□□ -1.73
VPS53-209ENST00000570771 CDPF1Q6NVV7 123 aa4.25□□□□□ -1.73
VPS53-209ENST00000570771 C2orf48Q96LS8 159 aa4.25□□□□□ -1.73
VPS53-209ENST00000570771 UQCR10Q9UDW1 63 aa4.25□□□□□ -1.73
VPS53-209ENST00000570771 GVQW2A0A096LPI5 108 aaPredicted RBP4.24□□□□□ -1.73
VPS53-209ENST00000570771 IGKV2D-26A0A0A0MRZ7 120 aa4.24□□□□□ -1.73
VPS53-209ENST00000570771 TRAV16A0A0A6YYK6 109 aaPredicted RBP4.24□□□□□ -1.73
VPS53-209ENST00000570771 USP17L23D6RBM5 183 aa4.24□□□□□ -1.73
VPS53-209ENST00000570771 SCGB1D4Q6XE38 83 aa4.24□□□□□ -1.73
VPS53-209ENST00000570771 PKIGQ9Y2B9 76 aa4.24□□□□□ -1.73
VPS53-209ENST00000570771 TRBV30A0A0K0K1B3 111 aa4.23□□□□□ -1.73
VPS53-209ENST00000570771 A0A1B0GVY2 172 aa4.23□□□□□ -1.73
VPS53-209ENST00000570771 KIAA0087Q14695 138 aa4.23□□□□□ -1.73
VPS53-209ENST00000570771 HIGD2BQ4VC39 106 aa4.23□□□□□ -1.73
VPS53-209ENST00000570771 BOD1L2Q8IYS8 172 aa4.23□□□□□ -1.73
VPS53-209ENST00000570771 C15orf56Q8N910 161 aa4.23□□□□□ -1.73
VPS53-209ENST00000570771 NTN5Q8WTR8 489 aaPredicted RBP4.23□□□□□ -1.73
VPS53-209ENST00000570771 COPS9Q8WXC6 57 aa4.23□□□□□ -1.73
VPS53-209ENST00000570771 ZNF625Q96I27 306 aaPredicted RBP4.23□□□□□ -1.73
VPS53-209ENST00000570771 C14orf144Q96I85 54 aa4.23□□□□□ -1.73
VPS53-209ENST00000570771 CAMK2N2Q96S95 79 aa4.23□□□□□ -1.73
VPS53-209ENST00000570771 MIEN1Q9BRT3 115 aa4.23□□□□□ -1.73
VPS53-209ENST00000570771 TMEM238C9JI98 176 aa4.22□□□□□ -1.73
VPS53-209ENST00000570771 LECT2O14960 151 aa4.22□□□□□ -1.73
VPS53-209ENST00000570771 TIMM17BO60830 172 aa4.22□□□□□ -1.73
VPS53-209ENST00000570771 HNRNPA3P51991 378 aaKnown RBP4.22□□□□□ -1.73
VPS53-209ENST00000570771 TSPEAR-AS2P59090 65 aa4.22□□□□□ -1.73
VPS53-209ENST00000570771 KRTAP10-2P60368 255 aa4.22□□□□□ -1.73
VPS53-209ENST00000570771 SYCNQ0VAF6 134 aa4.22□□□□□ -1.73
VPS53-209ENST00000570771 COX17Q14061 63 aa4.22□□□□□ -1.73
VPS53-209ENST00000570771 MEIG1Q5JSS6 88 aa4.22□□□□□ -1.73
VPS53-209ENST00000570771 Q6ZVH6 145 aa4.22□□□□□ -1.73
VPS53-209ENST00000570771 PCP2Q8IVA1 136 aa4.22□□□□□ -1.73
VPS53-209ENST00000570771 PRO1933Q9H354 126 aa4.22□□□□□ -1.73
VPS53-209ENST00000570771 HIGD1BQ9P298 99 aa4.22□□□□□ -1.73
VPS53-209ENST00000570771 A0A0J9YXY3 114 aa4.21□□□□□ -1.74
VPS53-209ENST00000570771 LRCOL1A6NCL2 159 aa4.21□□□□□ -1.74
VPS53-209ENST00000570771 RNF151Q2KHN1 245 aa4.21□□□□□ -1.74
VPS53-209ENST00000570771 CARD19Q96LW7 228 aa4.21□□□□□ -1.74
VPS53-209ENST00000570771 ERG28Q9UKR5 140 aa4.21□□□□□ -1.74
Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms