RNA–Protein interactions for RNA: ENST00000569406.5

CLK3-226, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 3,591 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-226ENST00000569406 LRRK2Q5S007 2527 aa7.73□□□□□ -1.17
CLK3-226ENST00000569406 Q6ZTI0 123 aa7.73□□□□□ -1.17
CLK3-226ENST00000569406 C11orf72Q8NBR9 251 aa7.73□□□□□ -1.17
CLK3-226ENST00000569406 TENM4Q6N022 2769 aa7.73□□□□□ -1.17
CLK3-226ENST00000569406 ABCA12Q86UK0 2595 aa7.73□□□□□ -1.17
CLK3-226ENST00000569406 C8orf87E5RJ46 101 aa7.72□□□□□ -1.17
CLK3-226ENST00000569406 MTORP42345 2549 aa7.72□□□□□ -1.17
CLK3-226ENST00000569406 C20orf203Q8NBC4 194 aa7.72□□□□□ -1.17
CLK3-226ENST00000569406 BBC3Q96PG8 261 aaPredicted RBP7.72□□□□□ -1.17
CLK3-226ENST00000569406 OVOL2Q9BRP0 275 aa7.72□□□□□ -1.17
CLK3-226ENST00000569406 IGKV3OR2-268A0A0C4DH90 116 aa7.72□□□□□ -1.17
CLK3-226ENST00000569406 SPINK13Q1W4C9 94 aa7.72□□□□□ -1.17
CLK3-226ENST00000569406 ORMDL1Q9P0S3 153 aa7.72□□□□□ -1.17
CLK3-226ENST00000569406 IGHV4-30-2A0A087WSY4 118 aa7.71□□□□□ -1.17
CLK3-226ENST00000569406 H3BUX3 64 aa7.71□□□□□ -1.17
CLK3-226ENST00000569406 FASNP49327 2511 aaKnown RBP7.71□□□□□ -1.17
CLK3-226ENST00000569406 TRBV10-3A0A0K0K1G6 114 aa7.71□□□□□ -1.18
CLK3-226ENST00000569406 Q6ZRP5 223 aa7.71□□□□□ -1.18
CLK3-226ENST00000569406 Q8N3U1 123 aa7.71□□□□□ -1.18
CLK3-226ENST00000569406 NIPBLQ6KC79 2804 aaeCLIP7.71□□□□□ -1.18
CLK3-226ENST00000569406 A0A096LNT2 108 aa7.71□□□□□ -1.18
CLK3-226ENST00000569406 ZNF462Q96JM2 2506 aa7.7□□□□□ -1.18
CLK3-226ENST00000569406 OBSCN-AS1Q96MR7 158 aa7.7□□□□□ -1.18
CLK3-226ENST00000569406 ANKRD17O75179 2603 aaKnown RBP7.7□□□□□ -1.18
CLK3-226ENST00000569406 NF1P21359 2839 aa7.7□□□□□ -1.18
CLK3-226ENST00000569406 IGHV4OR15-8A0A075B7B6 117 aa7.7□□□□□ -1.18
CLK3-226ENST00000569406 A0A087WW49 117 aa7.7□□□□□ -1.18
CLK3-226ENST00000569406 BCE1O60756 84 aa7.7□□□□□ -1.18
CLK3-226ENST00000569406 ZNF73O43830 326 aaPredicted RBP7.69□□□□□ -1.18
CLK3-226ENST00000569406 NREPQ16612 68 aa7.69□□□□□ -1.18
CLK3-226ENST00000569406 IGKV2-29A2NJV5 120 aaPredicted RBP7.69□□□□□ -1.18
CLK3-226ENST00000569406 LINC00588Q9Y4M8 146 aa7.69□□□□□ -1.18
CLK3-226ENST00000569406 SCXQ7RTU7 201 aa7.69□□□□□ -1.18
CLK3-226ENST00000569406 CDKN2A-AS1Q9UH64 79 aa7.69□□□□□ -1.18
CLK3-226ENST00000569406 IGHV3-38A0A0C4DH36 116 aa7.68□□□□□ -1.18
CLK3-226ENST00000569406 TRBV7-4A0A0J9YYF1 115 aa7.68□□□□□ -1.18
CLK3-226ENST00000569406 SMIM11BQ8TCY0 68 aa7.68□□□□□ -1.18
CLK3-226ENST00000569406 PRYO14603 147 aa7.68□□□□□ -1.18
CLK3-226ENST00000569406 NDUFA1O15239 70 aa7.68□□□□□ -1.18
CLK3-226ENST00000569406 LINC00315P59091 139 aa7.68□□□□□ -1.18
CLK3-226ENST00000569406 UBE2BP63146 152 aa7.68□□□□□ -1.18
CLK3-226ENST00000569406 TRAV22A0A0B4J277 110 aa7.67□□□□□ -1.18
CLK3-226ENST00000569406 A6NDX4 124 aa7.67□□□□□ -1.18
CLK3-226ENST00000569406 A8MUN3 132 aa7.67□□□□□ -1.18
CLK3-226ENST00000569406 LINC01356Q8N9X3 169 aa7.67□□□□□ -1.18
CLK3-226ENST00000569406 LINC01547P58512 204 aaPredicted RBP7.67□□□□□ -1.18
CLK3-226ENST00000569406 CR1P17927 2039 aa7.67□□□□□ -1.18
CLK3-226ENST00000569406 IGHV3-16A0A0C4DH30 117 aa7.67□□□□□ -1.18
CLK3-226ENST00000569406 C11orf44Q8N8P7 122 aa7.67□□□□□ -1.18
CLK3-226ENST00000569406 UBE2L6O14933 153 aa7.66□□□□□ -1.18
CLK3-226ENST00000569406 RNASE3P12724 160 aaKnown RBP7.66□□□□□ -1.18
CLK3-226ENST00000569406 CCL19Q99731 98 aa7.66□□□□□ -1.18
CLK3-226ENST00000569406 MUC4Q99102 2169 aa7.66□□□□□ -1.18
CLK3-226ENST00000569406 H0YGX0 51 aa7.66□□□□□ -1.18
CLK3-226ENST00000569406 IGLV1-40P01703 118 aa7.66□□□□□ -1.18
CLK3-226ENST00000569406 Q6ZVQ6 151 aa7.66□□□□□ -1.18
CLK3-226ENST00000569406 LINC00337Q8N6G1 96 aa7.66□□□□□ -1.18
CLK3-226ENST00000569406 SYCNQ0VAF6 134 aa7.65□□□□□ -1.18
CLK3-226ENST00000569406 KIF25-AS1Q9Y6Z4 181 aa7.65□□□□□ -1.18
CLK3-226ENST00000569406 JMJD7-PLA2G4BH0Y9G9 81 aa7.65□□□□□ -1.18
CLK3-226ENST00000569406 NANOS2P60321 138 aaKnown RBP7.65□□□□□ -1.18
CLK3-226ENST00000569406 Q1T7F1 81 aa7.65□□□□□ -1.19
CLK3-226ENST00000569406 Q6ZTC4 211 aa7.65□□□□□ -1.19
CLK3-226ENST00000569406 ZFAND2AQ8N6M9 145 aa7.65□□□□□ -1.19
CLK3-226ENST00000569406 ANK3Q12955 4377 aaKnown RBP7.64□□□□□ -1.19
CLK3-226ENST00000569406 MAPK1IP1LQ8NDC0 245 aa7.64□□□□□ -1.19
CLK3-226ENST00000569406 PDZD2O15018 2839 aa7.64□□□□□ -1.19
CLK3-226ENST00000569406 TOMM7Q9P0U1 55 aa7.64□□□□□ -1.19
CLK3-226ENST00000569406 TRBV10-1A0A0K0K1A3 114 aa7.64□□□□□ -1.19
CLK3-226ENST00000569406 LINC00269Q8N2A0 174 aa7.64□□□□□ -1.19
CLK3-226ENST00000569406 MDFIQ99750 246 aa7.64□□□□□ -1.19
CLK3-226ENST00000569406 CHKB-CPT1BH3BT56 60 aa7.63□□□□□ -1.19
CLK3-226ENST00000569406 MSMBP08118 114 aa7.63□□□□□ -1.19
CLK3-226ENST00000569406 C10orf99Q6UWK7 81 aa7.63□□□□□ -1.19
CLK3-226ENST00000569406 NDUFS5O43920 106 aa7.63□□□□□ -1.19
CLK3-226ENST00000569406 PRM2P04554 102 aa7.63□□□□□ -1.19
CLK3-226ENST00000569406 PRR26Q8N8Z3 221 aa7.63□□□□□ -1.19
CLK3-226ENST00000569406 HIGD2AQ9BW72 106 aa7.63□□□□□ -1.19
CLK3-226ENST00000569406 SND1-IT1Q9HBX3 110 aa7.63□□□□□ -1.19
CLK3-226ENST00000569406 hDV103S1A0JD37 113 aa7.63□□□□□ -1.19
CLK3-226ENST00000569406 IGHV3-53P01767 116 aa7.63□□□□□ -1.19
CLK3-226ENST00000569406 IGKV2D-29A0A075B6S2 120 aaPredicted RBP7.62□□□□□ -1.19
CLK3-226ENST00000569406 BPY2O14599 106 aa7.62□□□□□ -1.19
CLK3-226ENST00000569406 PRR4Q16378 134 aa7.62□□□□□ -1.19
CLK3-226ENST00000569406 ACANP16112 2415 aa7.61□□□□□ -1.19
CLK3-226ENST00000569406 NDUFA4O00483 81 aa7.61□□□□□ -1.19
CLK3-226ENST00000569406 TRBV6-5A0A0K0K1A5 114 aa7.61□□□□□ -1.19
CLK3-226ENST00000569406 M0QY20 66 aa7.61□□□□□ -1.19
CLK3-226ENST00000569406 C1orf64Q8NEQ6 169 aa7.61□□□□□ -1.19
CLK3-226ENST00000569406 LYRM9A8MSI8 78 aa7.6□□□□□ -1.19
CLK3-226ENST00000569406 FLNBO75369 2602 aaKnown RBP7.6□□□□□ -1.19
CLK3-226ENST00000569406 CCL24O00175 119 aa7.6□□□□□ -1.19
CLK3-226ENST00000569406 PROK1P58294 105 aa7.59□□□□□ -1.19
CLK3-226ENST00000569406 DEFB131AP59861 70 aa7.59□□□□□ -1.19
CLK3-226ENST00000569406 ITPR3Q14573 2671 aa7.59□□□□□ -1.19
CLK3-226ENST00000569406 H3BUA1 57 aa7.59□□□□□ -1.19
CLK3-226ENST00000569406 FSHBP01225 129 aa7.59□□□□□ -1.19
CLK3-226ENST00000569406 ZNF843Q8N446 348 aa7.59□□□□□ -1.19
CLK3-226ENST00000569406 LENEPQ9Y5L5 61 aa7.59□□□□□ -1.19
CLK3-226ENST00000569406 C16orf90A8MZG2 172 aa7.59□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 73.9 ms