RNA–Protein interactions for RNA: ENST00000568232.1

CLK3-222, Transcript of CDC like kinase 3, humanhuman

Gene CLK3, Length 958 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-222ENST00000568232 A0A1B0GUT8 65 aa6.86□□□□□ -1.31
CLK3-222ENST00000568232 A0A1B0GXF2 115 aa6.86□□□□□ -1.31
CLK3-222ENST00000568232 IGLC6P0CF74 106 aa6.86□□□□□ -1.31
CLK3-222ENST00000568232 JOSD1Q15040 202 aaPredicted RBP6.86□□□□□ -1.31
CLK3-222ENST00000568232 SS18Q15532 418 aa6.86□□□□□ -1.31
CLK3-222ENST00000568232 MRPL54Q6P161 138 aaKnown RBP6.86□□□□□ -1.31
CLK3-222ENST00000568232 KRTAP7-1Q8IUC3 87 aa6.86□□□□□ -1.31
CLK3-222ENST00000568232 IFITM10A6NMD0 228 aa6.85□□□□□ -1.31
CLK3-222ENST00000568232 F2Z2F3 143 aa6.85□□□□□ -1.31
CLK3-222ENST00000568232 H7C423 109 aa6.85□□□□□ -1.31
CLK3-222ENST00000568232 MALP21145 153 aa6.85□□□□□ -1.31
CLK3-222ENST00000568232 GATD1Q8NB37 220 aa6.85□□□□□ -1.31
CLK3-222ENST00000568232 IGLV7-46A0A075B6I9 117 aa6.84□□□□□ -1.31
CLK3-222ENST00000568232 LINC00587B1AMM8 73 aa6.84□□□□□ -1.31
CLK3-222ENST00000568232 ZNF25P17030 456 aaPredicted RBP6.84□□□□□ -1.31
CLK3-222ENST00000568232 PMCHP20382 165 aa6.84□□□□□ -1.31
CLK3-222ENST00000568232 UBE2BP63146 152 aa6.84□□□□□ -1.31
CLK3-222ENST00000568232 TYMSOSQ8TAI1 123 aa6.84□□□□□ -1.31
CLK3-222ENST00000568232 RPL39LQ96EH5 51 aaKnown RBP6.84□□□□□ -1.31
CLK3-222ENST00000568232 TMEM101Q96IK0 257 aa6.84□□□□□ -1.31
CLK3-222ENST00000568232 KRTAP4-1Q9BYQ7 146 aa6.84□□□□□ -1.31
CLK3-222ENST00000568232 COX7A2LO14548 114 aa6.83□□□□□ -1.32
CLK3-222ENST00000568232 NCR2O95944 276 aa6.83□□□□□ -1.32
CLK3-222ENST00000568232 CRYGAP11844 174 aa6.83□□□□□ -1.32
CLK3-222ENST00000568232 PDZD11Q5EBL8 140 aa6.83□□□□□ -1.32
CLK3-222ENST00000568232 CHCHD1Q96BP2 118 aaKnown RBP6.83□□□□□ -1.32
CLK3-222ENST00000568232 C2orf48Q96LS8 159 aa6.83□□□□□ -1.32
CLK3-222ENST00000568232 TSTD3H0UI37 97 aa6.82□□□□□ -1.32
CLK3-222ENST00000568232 ZNF861PO60384 105 aa6.82□□□□□ -1.32
CLK3-222ENST00000568232 PYY3Q5JQD4 70 aa6.82□□□□□ -1.32
CLK3-222ENST00000568232 LYZL1Q6UWQ5 148 aa6.82□□□□□ -1.32
CLK3-222ENST00000568232 ALKBH7Q9BT30 221 aaPredicted RBP6.82□□□□□ -1.32
CLK3-222ENST00000568232 CDC42SE2Q9NRR3 84 aa6.82□□□□□ -1.32
CLK3-222ENST00000568232 M0QXV9 152 aa6.81□□□□□ -1.32
CLK3-222ENST00000568232 SERF1AO75920 110 aa6.81□□□□□ -1.32
CLK3-222ENST00000568232 PPBPP02775 128 aa6.81□□□□□ -1.32
CLK3-222ENST00000568232 RNF151Q2KHN1 245 aa6.81□□□□□ -1.32
CLK3-222ENST00000568232 GAGE2EQ4V326 116 aa6.81□□□□□ -1.32
CLK3-222ENST00000568232 SMIM15Q7Z3B0 74 aa6.81□□□□□ -1.32
CLK3-222ENST00000568232 C5orf38Q86SI9 138 aa6.81□□□□□ -1.32
CLK3-222ENST00000568232 ANAPC11Q9NYG5 84 aa6.81□□□□□ -1.32
CLK3-222ENST00000568232 GAGE2DQ9UEU5 116 aa6.81□□□□□ -1.32
CLK3-222ENST00000568232 SDHAF1A6NFY7 115 aa6.8□□□□□ -1.32
CLK3-222ENST00000568232 HSBP1O75506 76 aa6.8□□□□□ -1.32
CLK3-222ENST00000568232 CTRLP40313 264 aa6.8□□□□□ -1.32
CLK3-222ENST00000568232 SPAG11BQ08648 103 aa6.8□□□□□ -1.32
CLK3-222ENST00000568232 C10orf25Q5T742 122 aa6.8□□□□□ -1.32
CLK3-222ENST00000568232 C18orf32Q8TCD1 76 aa6.8□□□□□ -1.32
CLK3-222ENST00000568232 CNFNQ9BYD5 112 aa6.8□□□□□ -1.32
CLK3-222ENST00000568232 LAMTOR2Q9Y2Q5 125 aa6.8□□□□□ -1.32
CLK3-222ENST00000568232 SCGB1D1O95968 90 aa6.79□□□□□ -1.32
CLK3-222ENST00000568232 LINC00173Q6ZV60 143 aa6.79□□□□□ -1.32
CLK3-222ENST00000568232 KRTAP13-2Q52LG2 175 aa6.78□□□□□ -1.32
CLK3-222ENST00000568232 RNASE13Q5GAN3 156 aaKnown RBP6.78□□□□□ -1.32
CLK3-222ENST00000568232 TMEM191AQ9H0A3 160 aa6.78□□□□□ -1.32
CLK3-222ENST00000568232 PPDPFQ9H3Y8 114 aa6.78□□□□□ -1.32
CLK3-222ENST00000568232 MRPL35Q9NZE8 188 aaKnown RBP6.78□□□□□ -1.32
CLK3-222ENST00000568232 I3L3M4 83 aa6.77□□□□□ -1.33
CLK3-222ENST00000568232 TSHBP01222 138 aa6.77□□□□□ -1.33
CLK3-222ENST00000568232 LINC00614P0C842 121 aa6.77□□□□□ -1.33
CLK3-222ENST00000568232 TWIST1Q15672 202 aa6.77□□□□□ -1.33
CLK3-222ENST00000568232 PMCHL1Q16048 86 aa6.77□□□□□ -1.33
CLK3-222ENST00000568232 KIAA1644Q3SXP7 199 aa6.77□□□□□ -1.33
CLK3-222ENST00000568232 FAM104BQ5XKR9 115 aa6.77□□□□□ -1.33
CLK3-222ENST00000568232 MRPL52Q86TS9 123 aaKnown RBP6.77□□□□□ -1.33
CLK3-222ENST00000568232 ORMDL3Q8N138 153 aa6.77□□□□□ -1.33
CLK3-222ENST00000568232 TRAV13-1A0A0B4J241 112 aa6.76□□□□□ -1.33
CLK3-222ENST00000568232 C20orf202A1L168 122 aa6.76□□□□□ -1.33
CLK3-222ENST00000568232 TLX1NBP0CAT3 122 aa6.76□□□□□ -1.33
CLK3-222ENST00000568232 UNQ6190/PRO20217Q6UXQ8 127 aa6.76□□□□□ -1.33
CLK3-222ENST00000568232 MRAP2Q96G30 205 aa6.76□□□□□ -1.33
CLK3-222ENST00000568232 C6orf48Q9UBA6 75 aa6.76□□□□□ -1.33
CLK3-222ENST00000568232 HSPB8Q9UJY1 196 aa6.76□□□□□ -1.33
CLK3-222ENST00000568232 PPP1R17O96001 155 aa6.75□□□□□ -1.33
CLK3-222ENST00000568232 ASB16-AS1Q495Z4 193 aa6.75□□□□□ -1.33
CLK3-222ENST00000568232 LINC00304Q8N9R0 145 aa6.75□□□□□ -1.33
CLK3-222ENST00000568232 NDUFA1O15239 70 aa6.74□□□□□ -1.33
CLK3-222ENST00000568232 NUPR1O60356 82 aa6.74□□□□□ -1.33
CLK3-222ENST00000568232 LBHQ53QV2 105 aaPredicted RBP6.74□□□□□ -1.33
CLK3-222ENST00000568232 C9orf129Q5T035 196 aaKnown RBP6.74□□□□□ -1.33
CLK3-222ENST00000568232 FA2HQ7L5A8 372 aa6.74□□□□□ -1.33
CLK3-222ENST00000568232 ORAOV1Q8WV07 137 aa6.74□□□□□ -1.33
CLK3-222ENST00000568232 CKS2P33552 79 aa6.73□□□□□ -1.33
CLK3-222ENST00000568232 KRTDAPP60985 99 aa6.73□□□□□ -1.33
CLK3-222ENST00000568232 TEX43Q6ZNM6 134 aa6.73□□□□□ -1.33
CLK3-222ENST00000568232 PRELID3AQ96N28 172 aa6.73□□□□□ -1.33
CLK3-222ENST00000568232 NXT2Q9NPJ8 142 aaKnown RBP6.73□□□□□ -1.33
CLK3-222ENST00000568232 K7EMI3 77 aa6.72□□□□□ -1.33
CLK3-222ENST00000568232 LEPROTL1O95214 131 aa6.72□□□□□ -1.33
CLK3-222ENST00000568232 DDTP30046 118 aa6.72□□□□□ -1.33
CLK3-222ENST00000568232 VAMP8Q9BV40 100 aa6.72□□□□□ -1.33
CLK3-222ENST00000568232 MAP1LC3CQ9BXW4 147 aa6.72□□□□□ -1.33
CLK3-222ENST00000568232 MAP1LC3AQ9H492 121 aa6.72□□□□□ -1.33
CLK3-222ENST00000568232 TRBV6-5A0A0K0K1A5 114 aa6.71□□□□□ -1.34
CLK3-222ENST00000568232 LINC01549A6NIU2 74 aa6.71□□□□□ -1.34
CLK3-222ENST00000568232 G0S2P27469 103 aa6.71□□□□□ -1.34
CLK3-222ENST00000568232 MRPL51Q4U2R6 128 aaKnown RBP6.71□□□□□ -1.34
CLK3-222ENST00000568232 PET117Q6UWS5 81 aa6.71□□□□□ -1.34
CLK3-222ENST00000568232 D6R8Y8 96 aa6.7□□□□□ -1.34
CLK3-222ENST00000568232 C3orf79P0CE67 100 aa6.7□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms