RNA–Protein interactions for RNA: ENST00000567495.6

CLN3-227, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 769 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-227ENST00000567495 TINCRA0A1B0GVN0 87 aa11.61□□□□□ -0.55
CLN3-227ENST00000567495 GAGE2EQ4V326 116 aa11.61□□□□□ -0.55
CLN3-227ENST00000567495 SPINK6Q6UWN8 80 aa11.61□□□□□ -0.55
CLN3-227ENST00000567495 LINC00469Q8N7U9 141 aa11.61□□□□□ -0.55
CLN3-227ENST00000567495 CST9LQ9H4G1 147 aa11.61□□□□□ -0.55
CLN3-227ENST00000567495 GAGE2DQ9UEU5 116 aa11.61□□□□□ -0.55
CLN3-227ENST00000567495 PKHD1L1Q86WI1 4243 aa11.61□□□□□ -0.55
CLN3-227ENST00000567495 PMVKQ15126 192 aa11.6□□□□□ -0.55
CLN3-227ENST00000567495 LINC00614P0C842 121 aa11.59□□□□□ -0.55
CLN3-227ENST00000567495 CXCL5P42830 114 aa11.59□□□□□ -0.55
CLN3-227ENST00000567495 IGLV5-45A0A087WSX0 123 aa11.58□□□□□ -0.56
CLN3-227ENST00000567495 RAB5BP61020 215 aa11.58□□□□□ -0.56
CLN3-227ENST00000567495 SRSF9Q13242 221 aaKnown RBP eCLIP11.58□□□□□ -0.56
CLN3-227ENST00000567495 C18orf32Q8TCD1 76 aa11.58□□□□□ -0.56
CLN3-227ENST00000567495 F8VRH5 84 aa11.57□□□□□ -0.56
CLN3-227ENST00000567495 PDZD11Q5EBL8 140 aa11.57□□□□□ -0.56
CLN3-227ENST00000567495 REG3GQ6UW15 175 aa11.57□□□□□ -0.56
CLN3-227ENST00000567495 MT1HL1P0DM35 61 aa11.56□□□□□ -0.56
CLN3-227ENST00000567495 PHF5AQ7RTV0 110 aaKnown RBP11.56□□□□□ -0.56
CLN3-227ENST00000567495 PSORS1C2Q9UIG4 136 aa11.56□□□□□ -0.56
CLN3-227ENST00000567495 SMIM1B2RUZ4 78 aa11.55□□□□□ -0.56
CLN3-227ENST00000567495 FAM168BA1KXE4 195 aa11.54□□□□□ -0.56
CLN3-227ENST00000567495 H3BRM9 83 aa11.54□□□□□ -0.56
CLN3-227ENST00000567495 HBDP02042 147 aa11.54□□□□□ -0.56
CLN3-227ENST00000567495 FAM19A5Q7Z5A7 132 aaPredicted RBP11.54□□□□□ -0.56
CLN3-227ENST00000567495 LINC01600Q96MT4 127 aa11.54□□□□□ -0.56
CLN3-227ENST00000567495 COX7B2Q8TF08 81 aa11.53□□□□□ -0.56
CLN3-227ENST00000567495 ATP5LO75964 103 aa11.52□□□□□ -0.57
CLN3-227ENST00000567495 ODF1Q14990 250 aa11.52□□□□□ -0.57
CLN3-227ENST00000567495 C1orf137Q5JT78 98 aa11.52□□□□□ -0.57
CLN3-227ENST00000567495 C9orf129Q5T035 196 aaKnown RBP11.52□□□□□ -0.57
CLN3-227ENST00000567495 URB1-AS1Q96HZ7 61 aa11.52□□□□□ -0.57
CLN3-227ENST00000567495 A0A096LNJ9 63 aa11.51□□□□□ -0.57
CLN3-227ENST00000567495 M0QXV9 152 aa11.51□□□□□ -0.57
CLN3-227ENST00000567495 YPEL4Q96NS1 127 aa11.51□□□□□ -0.57
CLN3-227ENST00000567495 IGLC3P0DOY3 106 aa11.5□□□□□ -0.57
CLN3-227ENST00000567495 NDUFA6P56556 154 aa11.5□□□□□ -0.57
CLN3-227ENST00000567495 KRTAP7-1Q8IUC3 87 aa11.49□□□□□ -0.57
CLN3-227ENST00000567495 SPINK8P0C7L1 97 aa11.48□□□□□ -0.57
CLN3-227ENST00000567495 UBE2BP63146 152 aa11.48□□□□□ -0.57
CLN3-227ENST00000567495 IGLV7-43P04211 117 aa11.47□□□□□ -0.57
CLN3-227ENST00000567495 LBHQ53QV2 105 aaPredicted RBP11.47□□□□□ -0.57
CLN3-227ENST00000567495 DIRC1Q969H9 104 aa11.47□□□□□ -0.57
CLN3-227ENST00000567495 CHCHD1Q96BP2 118 aaKnown RBP11.47□□□□□ -0.57
CLN3-227ENST00000567495 PMCHL1Q16048 86 aa11.46□□□□□ -0.57
CLN3-227ENST00000567495 XAGE1AQ9HD64 81 aa11.46□□□□□ -0.57
CLN3-227ENST00000567495 PLA2G2DQ9UNK4 145 aa11.46□□□□□ -0.57
CLN3-227ENST00000567495 BAGE3Q86Y29 109 aa11.45□□□□□ -0.58
CLN3-227ENST00000567495 IGLV5-39A0A0G2JS06 123 aa11.44□□□□□ -0.58
CLN3-227ENST00000567495 TP73-AS1Q9UF72 201 aa11.44□□□□□ -0.58
CLN3-227ENST00000567495 ZNF22P17026 224 aaPredicted RBP11.43□□□□□ -0.58
CLN3-227ENST00000567495 KRTAP11-1Q8IUC1 163 aa11.43□□□□□ -0.58
CLN3-227ENST00000567495 C22orf24Q9Y442 160 aa11.43□□□□□ -0.58
CLN3-227ENST00000567495 KRTAP10-8P60410 259 aa11.42□□□□□ -0.58
CLN3-227ENST00000567495 SFTA2Q6UW10 78 aa11.42□□□□□ -0.58
CLN3-227ENST00000567495 CBLN2Q8IUK8 224 aa11.42□□□□□ -0.58
CLN3-227ENST00000567495 TRAV12-1A0A0B4J245 112 aa11.39□□□□□ -0.59
CLN3-227ENST00000567495 C11orf86A6NJI1 115 aa11.39□□□□□ -0.59
CLN3-227ENST00000567495 NUPR1O60356 82 aa11.39□□□□□ -0.59
CLN3-227ENST00000567495 TMEM170BQ5T4T1 132 aa11.39□□□□□ -0.59
CLN3-227ENST00000567495 MRPL55Q7Z7F7 128 aaKnown RBP11.39□□□□□ -0.59
CLN3-227ENST00000567495 IFI27L1Q96BM0 104 aa11.39□□□□□ -0.59
CLN3-227ENST00000567495 CHTOPQ9Y3Y2 248 aaKnown RBP11.39□□□□□ -0.59
CLN3-227ENST00000567495 HMCN2Q8NDA2 5059 aa11.39□□□□□ -0.59
CLN3-227ENST00000567495 H0Y9J4 135 aa11.38□□□□□ -0.59
CLN3-227ENST00000567495 HSBP1O75506 76 aa11.38□□□□□ -0.59
CLN3-227ENST00000567495 COX17Q14061 63 aa11.37□□□□□ -0.59
CLN3-227ENST00000567495 SLC7A5P1Q8MH63 180 aa11.36□□□□□ -0.59
CLN3-227ENST00000567495 TNXBP22105 4242 aa11.35□□□□□ -0.59
CLN3-227ENST00000567495 IGLV5-37A0A075B6J1 123 aa11.35□□□□□ -0.59
CLN3-227ENST00000567495 TRGC2P03986 189 aa11.35□□□□□ -0.59
CLN3-227ENST00000567495 ERG28Q9UKR5 140 aa11.35□□□□□ -0.59
CLN3-227ENST00000567495 ZNF861PO60384 105 aa11.34□□□□□ -0.59
CLN3-227ENST00000567495 PFN2P35080 140 aa11.34□□□□□ -0.59
CLN3-227ENST00000567495 NKAPP1Q8N9T2 125 aa11.33□□□□□ -0.6
CLN3-227ENST00000567495 LINC00167Q96N53 147 aa11.32□□□□□ -0.6
CLN3-227ENST00000567495 TMEM223A0PJW6 202 aa11.31□□□□□ -0.6
CLN3-227ENST00000567495 FAM19A2Q8N3H0 131 aa11.31□□□□□ -0.6
CLN3-227ENST00000567495 ZNF625Q96I27 306 aaPredicted RBP11.31□□□□□ -0.6
CLN3-227ENST00000567495 IGLV1-50A0A075B6I6 118 aa11.3□□□□□ -0.6
CLN3-227ENST00000567495 BCE1O60756 84 aa11.3□□□□□ -0.6
CLN3-227ENST00000567495 RPL28P46779 137 aaKnown RBP11.3□□□□□ -0.6
CLN3-227ENST00000567495 SND1-IT1Q9HBX3 110 aa11.3□□□□□ -0.6
CLN3-227ENST00000567495 SERF1AO75920 110 aa11.29□□□□□ -0.6
CLN3-227ENST00000567495 RPL24P83731 157 aaKnown RBP11.29□□□□□ -0.6
CLN3-227ENST00000567495 RPL37AP8A6NKH3 93 aa11.28□□□□□ -0.6
CLN3-227ENST00000567495 COLCA2A8K830 154 aa11.28□□□□□ -0.6
CLN3-227ENST00000567495 LEPROTL1O95214 131 aa11.28□□□□□ -0.6
CLN3-227ENST00000567495 GAGE10A6NGK3 116 aa11.27□□□□□ -0.61
CLN3-227ENST00000567495 KRTAP1-4P0C5Y4 121 aa11.27□□□□□ -0.61
CLN3-227ENST00000567495 PRR26Q8N8Z3 221 aa11.27□□□□□ -0.61
CLN3-227ENST00000567495 HSPB8Q9UJY1 196 aa11.27□□□□□ -0.61
CLN3-227ENST00000567495 RPL13AP40429 203 aaKnown RBP11.26□□□□□ -0.61
CLN3-227ENST00000567495 LINC00587B1AMM8 73 aa11.24□□□□□ -0.61
CLN3-227ENST00000567495 VPREB1P12018 145 aa11.24□□□□□ -0.61
CLN3-227ENST00000567495 LINC00158P58513 81 aa11.24□□□□□ -0.61
CLN3-227ENST00000567495 LINC00310P59036 64 aa11.24□□□□□ -0.61
CLN3-227ENST00000567495 HERV-K104P63124 156 aa11.24□□□□□ -0.61
CLN3-227ENST00000567495 PLNP26678 52 aa11.23□□□□□ -0.61
CLN3-227ENST00000567495 H0Y8G0 127 aa11.22□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 80.5 ms