RNA–Protein interactions for RNA: ENST00000566808.2

CDH3-205, Transcript of cadherin 3, humanhuman

TSL 5

Gene CDH3, Length 573 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH3-205ENST00000566808 ALKBH7Q9BT30 221 aaPredicted RBP9.42□□□□□ -0.9
CDH3-205ENST00000566808 C4orf48Q5BLP8 95 aa9.41□□□□□ -0.9
CDH3-205ENST00000566808 NKAPP1Q8N9T2 125 aa9.41□□□□□ -0.9
CDH3-205ENST00000566808 C2orf88Q9BSF0 95 aa9.41□□□□□ -0.9
CDH3-205ENST00000566808 CKS2P33552 79 aa9.4□□□□□ -0.9
CDH3-205ENST00000566808 KRTAP10-6P60371 365 aaPredicted RBP9.4□□□□□ -0.9
CDH3-205ENST00000566808 EIF5A2Q9GZV4 153 aaKnown RBP9.4□□□□□ -0.9
CDH3-205ENST00000566808 IGKV2-28A0A075B6P5 120 aa9.39□□□□□ -0.91
CDH3-205ENST00000566808 IGKV2D-28P01615 120 aa9.39□□□□□ -0.91
CDH3-205ENST00000566808 OSTCQ9NRP0 149 aa9.39□□□□□ -0.91
CDH3-205ENST00000566808 CXCL5P42830 114 aa9.38□□□□□ -0.91
CDH3-205ENST00000566808 XP32Q5T750 250 aa9.38□□□□□ -0.91
CDH3-205ENST00000566808 LINC01551Q86U37 167 aa9.38□□□□□ -0.91
CDH3-205ENST00000566808 DAND5Q8N907 189 aa9.38□□□□□ -0.91
CDH3-205ENST00000566808 PLEKHB2Q96CS7 222 aa9.38□□□□□ -0.91
CDH3-205ENST00000566808 FAM19A1Q7Z5A9 133 aa9.37□□□□□ -0.91
CDH3-205ENST00000566808 NDUFA12Q9UI09 145 aa9.37□□□□□ -0.91
CDH3-205ENST00000566808 NAT8BQ9UHF3 227 aa9.36□□□□□ -0.91
CDH3-205ENST00000566808 D6R8Y8 96 aa9.35□□□□□ -0.91
CDH3-205ENST00000566808 NPYP01303 97 aa9.35□□□□□ -0.91
CDH3-205ENST00000566808 RAB5AP20339 215 aa9.35□□□□□ -0.91
CDH3-205ENST00000566808 CEBPGP53567 150 aa9.35□□□□□ -0.91
CDH3-205ENST00000566808 SMIM7Q9BQ49 75 aa9.35□□□□□ -0.91
CDH3-205ENST00000566808 TMEM126AQ9H061 195 aa9.35□□□□□ -0.91
CDH3-205ENST00000566808 V9GYV3 84 aa9.35□□□□□ -0.91
CDH3-205ENST00000566808 GNB1LQ9BYB4 327 aa9.34□□□□□ -0.91
CDH3-205ENST00000566808 A0A1B0GW15 77 aa9.33□□□□□ -0.92
CDH3-205ENST00000566808 SPINK1P00995 79 aa9.33□□□□□ -0.92
CDH3-205ENST00000566808 FAM19A3Q7Z5A8 133 aa9.33□□□□□ -0.92
CDH3-205ENST00000566808 FAM19A2Q8N3H0 131 aa9.33□□□□□ -0.92
CDH3-205ENST00000566808 Q8NBF4 154 aa9.33□□□□□ -0.92
CDH3-205ENST00000566808 ZC2HC1BQ5TFG8 222 aa9.32□□□□□ -0.92
CDH3-205ENST00000566808 CBLN2Q8IUK8 224 aa9.32□□□□□ -0.92
CDH3-205ENST00000566808 AMELXQ99217 191 aa9.32□□□□□ -0.92
CDH3-205ENST00000566808 TMEM238C9JI98 176 aa9.31□□□□□ -0.92
CDH3-205ENST00000566808 SCO1O75880 301 aa9.31□□□□□ -0.92
CDH3-205ENST00000566808 PPBPP02775 128 aa9.31□□□□□ -0.92
CDH3-205ENST00000566808 HERVK_113P63121 156 aa9.31□□□□□ -0.92
CDH3-205ENST00000566808 SPRR4Q96PI1 79 aa9.31□□□□□ -0.92
CDH3-205ENST00000566808 VCX2Q9H322 139 aa9.31□□□□□ -0.92
CDH3-205ENST00000566808 CDKN2A-AS1Q9UH64 79 aa9.31□□□□□ -0.92
CDH3-205ENST00000566808 SEC11AP67812 179 aa9.3□□□□□ -0.92
CDH3-205ENST00000566808 FAM74A3Q4VXF1 159 aa9.3□□□□□ -0.92
CDH3-205ENST00000566808 NPSP0C0P6 89 aa9.29□□□□□ -0.92
CDH3-205ENST00000566808 C2orf66Q6UXQ4 117 aa9.29□□□□□ -0.92
CDH3-205ENST00000566808 HIGD2AQ9BW72 106 aa9.29□□□□□ -0.92
CDH3-205ENST00000566808 CYSLTR1Q9Y271 337 aa9.29□□□□□ -0.92
CDH3-205ENST00000566808 F8W036 122 aa9.28□□□□□ -0.92
CDH3-205ENST00000566808 M0R378 163 aa9.28□□□□□ -0.92
CDH3-205ENST00000566808 ZNF706Q9Y5V0 76 aaPredicted RBP9.28□□□□□ -0.92
CDH3-205ENST00000566808 S100A8P05109 93 aa9.27□□□□□ -0.93
CDH3-205ENST00000566808 GEMIN7Q9H840 131 aaKnown RBP9.27□□□□□ -0.93
CDH3-205ENST00000566808 SMIM27A0A1W2PRY6 76 aa9.26□□□□□ -0.93
CDH3-205ENST00000566808 M0R2T5 61 aa9.26□□□□□ -0.93
CDH3-205ENST00000566808 RPS29P62273 56 aaKnown RBP9.26□□□□□ -0.93
CDH3-205ENST00000566808 ORMDL3Q8N138 153 aa9.26□□□□□ -0.93
CDH3-205ENST00000566808 SMIM1B2RUZ4 78 aa9.25□□□□□ -0.93
CDH3-205ENST00000566808 RGS21Q2M5E4 152 aa9.25□□□□□ -0.93
CDH3-205ENST00000566808 SLC51BQ86UW2 128 aa9.25□□□□□ -0.93
CDH3-205ENST00000566808 Q8N377 158 aa9.25□□□□□ -0.93
CDH3-205ENST00000566808 COX7B2Q8TF08 81 aa9.25□□□□□ -0.93
CDH3-205ENST00000566808 VPREB1P12018 145 aa9.24□□□□□ -0.93
CDH3-205ENST00000566808 RAB5BP61020 215 aa9.24□□□□□ -0.93
CDH3-205ENST00000566808 IGLV8-61A0A075B6I0 122 aa9.23□□□□□ -0.93
CDH3-205ENST00000566808 PDZD11Q5EBL8 140 aa9.23□□□□□ -0.93
CDH3-205ENST00000566808 MRPL54Q6P161 138 aaKnown RBP9.23□□□□□ -0.93
CDH3-205ENST00000566808 PRELID3AQ96N28 172 aa9.23□□□□□ -0.93
CDH3-205ENST00000566808 A0A1B0GXF2 115 aa9.22□□□□□ -0.93
CDH3-205ENST00000566808 IGIPA6NJ69 53 aa9.22□□□□□ -0.93
CDH3-205ENST00000566808 SLC25A20O43772 301 aa9.22□□□□□ -0.93
CDH3-205ENST00000566808 PAPPA-AS1Q5QFB9 102 aa9.22□□□□□ -0.93
CDH3-205ENST00000566808 FLGP20930 4061 aaPredicted RBP9.22□□□□□ -0.93
CDH3-205ENST00000566808 TMEM136Q6ZRR5 245 aa9.21□□□□□ -0.94
CDH3-205ENST00000566808 PRSS47A8MTI9 375 aa9.2□□□□□ -0.94
CDH3-205ENST00000566808 BLOC1S1P78537 153 aa9.2□□□□□ -0.94
CDH3-205ENST00000566808 PCOTHQ58A44 107 aa9.2□□□□□ -0.94
CDH3-205ENST00000566808 MAP1LC3AQ9H492 121 aa9.2□□□□□ -0.94
CDH3-205ENST00000566808 RPL24P83731 157 aaKnown RBP9.19□□□□□ -0.94
CDH3-205ENST00000566808 ORMDL2Q53FV1 153 aa9.19□□□□□ -0.94
CDH3-205ENST00000566808 LAMTOR2Q9Y2Q5 125 aa9.19□□□□□ -0.94
CDH3-205ENST00000566808 LOC389332A0A1B0GUA5 103 aa9.18□□□□□ -0.94
CDH3-205ENST00000566808 ATP5LO75964 103 aa9.18□□□□□ -0.94
CDH3-205ENST00000566808 RPL23P62829 140 aaKnown RBP9.17□□□□□ -0.94
CDH3-205ENST00000566808 ADIRFQ15847 76 aa9.17□□□□□ -0.94
CDH3-205ENST00000566808 Q8N8P6 123 aa9.17□□□□□ -0.94
CDH3-205ENST00000566808 IGLV5-45A0A087WSX0 123 aa9.16□□□□□ -0.94
CDH3-205ENST00000566808 SND1-IT1Q9HBX3 110 aa9.16□□□□□ -0.94
CDH3-205ENST00000566808 BATF3Q9NR55 127 aa9.16□□□□□ -0.94
CDH3-205ENST00000566808 SSPOA2VEC9 5147 aa9.15□□□□□ -0.94
CDH3-205ENST00000566808 K7EMI3 77 aa9.15□□□□□ -0.94
CDH3-205ENST00000566808 SRP19P09132 144 aaKnown RBP9.15□□□□□ -0.94
CDH3-205ENST00000566808 PFN2P35080 140 aa9.15□□□□□ -0.94
CDH3-205ENST00000566808 TIMM17AQ99595 171 aa9.15□□□□□ -0.94
CDH3-205ENST00000566808 TINCRA0A1B0GVN0 87 aa9.14□□□□□ -0.95
CDH3-205ENST00000566808 MOBPQ13875 183 aa9.14□□□□□ -0.95
CDH3-205ENST00000566808 LINC00483Q53H64 154 aa9.14□□□□□ -0.95
CDH3-205ENST00000566808 ATP5L2Q7Z4Y8 100 aa9.13□□□□□ -0.95
CDH3-205ENST00000566808 USH2AO75445 5202 aa9.13□□□□□ -0.95
CDH3-205ENST00000566808 SPINK8P0C7L1 97 aa9.12□□□□□ -0.95
CDH3-205ENST00000566808 RAB14P61106 215 aa9.12□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 135.4 ms