RNA–Protein interactions for RNA: ENST00000564399.1

VPS4A-203, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 5

Gene VPS4A, Length 471 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-203ENST00000564399 ALKBH7Q9BT30 221 aaPredicted RBP4.15□□□□□ -1.75
VPS4A-203ENST00000564399 IGLV4-3A0A075B6K6 122 aa4.14□□□□□ -1.75
VPS4A-203ENST00000564399 TRBV24-1A0A075B6N3 115 aa4.14□□□□□ -1.75
VPS4A-203ENST00000564399 TMEM250H0YL14 139 aa4.14□□□□□ -1.75
VPS4A-203ENST00000564399 RAB5AP20339 215 aa4.14□□□□□ -1.75
VPS4A-203ENST00000564399 PRLHP81277 87 aa4.14□□□□□ -1.75
VPS4A-203ENST00000564399 PNRC1Q12796 327 aaPredicted RBP4.14□□□□□ -1.75
VPS4A-203ENST00000564399 TEX43Q6ZNM6 134 aa4.14□□□□□ -1.75
VPS4A-203ENST00000564399 Q8IZM0 81 aa4.14□□□□□ -1.75
VPS4A-203ENST00000564399 NKAPP1Q8N9T2 125 aa4.14□□□□□ -1.75
VPS4A-203ENST00000564399 TMEM141Q96I45 108 aa4.14□□□□□ -1.75
VPS4A-203ENST00000564399 C2orf88Q9BSF0 95 aa4.14□□□□□ -1.75
VPS4A-203ENST00000564399 IGKV2-28A0A075B6P5 120 aa4.13□□□□□ -1.75
VPS4A-203ENST00000564399 F8VRH5 84 aa4.13□□□□□ -1.75
VPS4A-203ENST00000564399 IGKV2D-28P01615 120 aa4.13□□□□□ -1.75
VPS4A-203ENST00000564399 CFC1BP0CG36 223 aa4.13□□□□□ -1.75
VPS4A-203ENST00000564399 FAM19A1Q7Z5A9 133 aa4.13□□□□□ -1.75
VPS4A-203ENST00000564399 SMIM7Q9BQ49 75 aa4.13□□□□□ -1.75
VPS4A-203ENST00000564399 OSTCQ9NRP0 149 aa4.13□□□□□ -1.75
VPS4A-203ENST00000564399 PYGO1Q9Y3Y4 419 aa4.13□□□□□ -1.75
VPS4A-203ENST00000564399 A0A1B0GVG6 124 aa4.12□□□□□ -1.75
VPS4A-203ENST00000564399 D6R8Y8 96 aa4.12□□□□□ -1.75
VPS4A-203ENST00000564399 NPYP01303 97 aa4.12□□□□□ -1.75
VPS4A-203ENST00000564399 ZC2HC1BQ5TFG8 222 aa4.12□□□□□ -1.75
VPS4A-203ENST00000564399 LINC01551Q86U37 167 aa4.12□□□□□ -1.75
VPS4A-203ENST00000564399 EIF5A2Q9GZV4 153 aaKnown RBP4.12□□□□□ -1.75
VPS4A-203ENST00000564399 NAT8BQ9UHF3 227 aa4.12□□□□□ -1.75
VPS4A-203ENST00000564399 SCO1O75880 301 aa4.11□□□□□ -1.75
VPS4A-203ENST00000564399 DAND5Q8N907 189 aa4.11□□□□□ -1.75
VPS4A-203ENST00000564399 PLEKHB2Q96CS7 222 aa4.11□□□□□ -1.75
VPS4A-203ENST00000564399 VCX2Q9H322 139 aa4.11□□□□□ -1.75
VPS4A-203ENST00000564399 V9GYV3 84 aa4.11□□□□□ -1.75
VPS4A-203ENST00000564399 IGLV5-37A0A075B6J1 123 aa4.1□□□□□ -1.75
VPS4A-203ENST00000564399 A0A1B0GW15 77 aa4.1□□□□□ -1.75
VPS4A-203ENST00000564399 CXCL5P42830 114 aa4.1□□□□□ -1.75
VPS4A-203ENST00000564399 RAB5BP61020 215 aa4.1□□□□□ -1.75
VPS4A-203ENST00000564399 MT1HP80294 61 aa4.1□□□□□ -1.75
VPS4A-203ENST00000564399 CBLN2Q8IUK8 224 aa4.1□□□□□ -1.75
VPS4A-203ENST00000564399 HIGD2AQ9BW72 106 aa4.1□□□□□ -1.75
VPS4A-203ENST00000564399 CDKN2A-AS1Q9UH64 79 aa4.1□□□□□ -1.75
VPS4A-203ENST00000564399 NDUFA12Q9UI09 145 aa4.1□□□□□ -1.75
VPS4A-203ENST00000564399 TMEM238C9JI98 176 aa4.09□□□□□ -1.75
VPS4A-203ENST00000564399 F8W036 122 aa4.09□□□□□ -1.75
VPS4A-203ENST00000564399 PPBPP02775 128 aa4.09□□□□□ -1.75
VPS4A-203ENST00000564399 HERVK_113P63121 156 aa4.09□□□□□ -1.75
VPS4A-203ENST00000564399 SEC11AP67812 179 aa4.09□□□□□ -1.75
VPS4A-203ENST00000564399 RGS21Q2M5E4 152 aa4.09□□□□□ -1.75
VPS4A-203ENST00000564399 FAM74A3Q4VXF1 159 aa4.09□□□□□ -1.75
VPS4A-203ENST00000564399 C2orf66Q6UXQ4 117 aa4.09□□□□□ -1.75
VPS4A-203ENST00000564399 Q8NBF4 154 aa4.09□□□□□ -1.75
VPS4A-203ENST00000564399 KRTAP4-8Q9BYQ9 185 aa4.09□□□□□ -1.75
VPS4A-203ENST00000564399 TMEM126AQ9H061 195 aa4.09□□□□□ -1.75
VPS4A-203ENST00000564399 GEMIN7Q9H840 131 aaKnown RBP4.09□□□□□ -1.75
VPS4A-203ENST00000564399 BATF3Q9NR55 127 aa4.09□□□□□ -1.75
VPS4A-203ENST00000564399 CYSLTR1Q9Y271 337 aa4.09□□□□□ -1.75
VPS4A-203ENST00000564399 LOC389332A0A1B0GUA5 103 aa4.08□□□□□ -1.76
VPS4A-203ENST00000564399 S100A8P05109 93 aa4.08□□□□□ -1.76
VPS4A-203ENST00000564399 BLOC1S1P78537 153 aa4.08□□□□□ -1.76
VPS4A-203ENST00000564399 MRPL54Q6P161 138 aaKnown RBP4.08□□□□□ -1.76
VPS4A-203ENST00000564399 TMEM136Q6ZRR5 245 aa4.08□□□□□ -1.76
VPS4A-203ENST00000564399 SLC51BQ86UW2 128 aa4.08□□□□□ -1.76
VPS4A-203ENST00000564399 PRELID3AQ96N28 172 aa4.08□□□□□ -1.76
VPS4A-203ENST00000564399 AMELXQ99217 191 aa4.08□□□□□ -1.76
VPS4A-203ENST00000564399 GNB1LQ9BYB4 327 aa4.08□□□□□ -1.76
VPS4A-203ENST00000564399 SMIM27A0A1W2PRY6 76 aa4.07□□□□□ -1.76
VPS4A-203ENST00000564399 M0R2T5 61 aa4.07□□□□□ -1.76
VPS4A-203ENST00000564399 SPINK1P00995 79 aa4.07□□□□□ -1.76
VPS4A-203ENST00000564399 KRTAP10-6P60371 365 aaPredicted RBP4.07□□□□□ -1.76
VPS4A-203ENST00000564399 KRTAP19-2Q3LHN2 52 aa4.07□□□□□ -1.76
VPS4A-203ENST00000564399 ORMDL3Q8N138 153 aa4.07□□□□□ -1.76
VPS4A-203ENST00000564399 COX7B2Q8TF08 81 aa4.07□□□□□ -1.76
VPS4A-203ENST00000564399 SPRR4Q96PI1 79 aa4.07□□□□□ -1.76
VPS4A-203ENST00000564399 M0R378 163 aa4.06□□□□□ -1.76
VPS4A-203ENST00000564399 ADIRFQ15847 76 aa4.06□□□□□ -1.76
VPS4A-203ENST00000564399 PAPPA-AS1Q5QFB9 102 aa4.06□□□□□ -1.76
VPS4A-203ENST00000564399 FAM19A3Q7Z5A8 133 aa4.06□□□□□ -1.76
VPS4A-203ENST00000564399 FAM19A2Q8N3H0 131 aa4.06□□□□□ -1.76
VPS4A-203ENST00000564399 ZNF706Q9Y5V0 76 aaPredicted RBP4.06□□□□□ -1.76
VPS4A-203ENST00000564399 SMIM1B2RUZ4 78 aa4.05□□□□□ -1.76
VPS4A-203ENST00000564399 NPSP0C0P6 89 aa4.05□□□□□ -1.76
VPS4A-203ENST00000564399 PFN2P35080 140 aa4.05□□□□□ -1.76
VPS4A-203ENST00000564399 RPL23P62829 140 aaKnown RBP4.05□□□□□ -1.76
VPS4A-203ENST00000564399 PDZD11Q5EBL8 140 aa4.05□□□□□ -1.76
VPS4A-203ENST00000564399 MAP1LC3AQ9H492 121 aa4.05□□□□□ -1.76
VPS4A-203ENST00000564399 IGLV8-61A0A075B6I0 122 aa4.04□□□□□ -1.76
VPS4A-203ENST00000564399 IGIPA6NJ69 53 aa4.04□□□□□ -1.76
VPS4A-203ENST00000564399 ATP5LO75964 103 aa4.04□□□□□ -1.76
VPS4A-203ENST00000564399 SRP19P09132 144 aaKnown RBP4.04□□□□□ -1.76
VPS4A-203ENST00000564399 VPREB1P12018 145 aa4.04□□□□□ -1.76
VPS4A-203ENST00000564399 RAB14P61106 215 aa4.04□□□□□ -1.76
VPS4A-203ENST00000564399 RPL24P83731 157 aaKnown RBP4.04□□□□□ -1.76
VPS4A-203ENST00000564399 ORMDL2Q53FV1 153 aa4.04□□□□□ -1.76
VPS4A-203ENST00000564399 ALKAL2Q6UX46 152 aa4.04□□□□□ -1.76
VPS4A-203ENST00000564399 Q8N8P6 123 aa4.04□□□□□ -1.76
VPS4A-203ENST00000564399 A0A1B0GXF2 115 aa4.03□□□□□ -1.76
VPS4A-203ENST00000564399 PRSS47A8MTI9 375 aa4.03□□□□□ -1.76
VPS4A-203ENST00000564399 SLC25A20O43772 301 aa4.03□□□□□ -1.76
VPS4A-203ENST00000564399 SPINK8P0C7L1 97 aa4.03□□□□□ -1.76
VPS4A-203ENST00000564399 PCOTHQ58A44 107 aa4.03□□□□□ -1.76
VPS4A-203ENST00000564399 Q8N377 158 aa4.03□□□□□ -1.76
Retrieved 100 of 20,778 RNA–protein pairs in 63 ms