RNA–Protein interactions for RNA: ENST00000562670.5

CLK3-209, Transcript of CDC like kinase 3, humanhuman

TSL 4

Gene CLK3, Length 544 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-209ENST00000562670 TMEM238C9JI98 176 aa9.21□□□□□ -0.94
CLK3-209ENST00000562670 HSD52Q0P140 79 aa9.21□□□□□ -0.94
CLK3-209ENST00000562670 TAL2Q16559 108 aa9.21□□□□□ -0.94
CLK3-209ENST00000562670 Q6ZRN7 208 aaPredicted RBP9.21□□□□□ -0.94
CLK3-209ENST00000562670 LY6G6CO95867 125 aa9.2□□□□□ -0.94
CLK3-209ENST00000562670 CKS1BP61024 79 aa9.2□□□□□ -0.94
CLK3-209ENST00000562670 Q6ZVH6 145 aa9.2□□□□□ -0.94
CLK3-209ENST00000562670 NTN5Q8WTR8 489 aaPredicted RBP9.2□□□□□ -0.94
CLK3-209ENST00000562670 LITAFQ99732 161 aa9.2□□□□□ -0.94
CLK3-209ENST00000562670 USP17L23D6RBM5 183 aa9.19□□□□□ -0.94
CLK3-209ENST00000562670 ZNF561-AS1K7EIQ3 104 aa9.19□□□□□ -0.94
CLK3-209ENST00000562670 SPANXDQ9BXN6 97 aa9.19□□□□□ -0.94
CLK3-209ENST00000562670 PPDPFQ9H3Y8 114 aa9.19□□□□□ -0.94
CLK3-209ENST00000562670 SPANXCQ9NY87 97 aa9.19□□□□□ -0.94
CLK3-209ENST00000562670 CTAG1AP78358 180 aa9.18□□□□□ -0.94
CLK3-209ENST00000562670 CIRBPQ14011 172 aaKnown RBP9.18□□□□□ -0.94
CLK3-209ENST00000562670 COX17Q14061 63 aa9.18□□□□□ -0.94
CLK3-209ENST00000562670 C6orf223Q8N319 242 aa9.18□□□□□ -0.94
CLK3-209ENST00000562670 KMT2AQ03164 3969 aa9.17□□□□□ -0.94
CLK3-209ENST00000562670 TRBV30A0A0K0K1B3 111 aa9.17□□□□□ -0.94
CLK3-209ENST00000562670 M0R143 59 aa9.17□□□□□ -0.94
CLK3-209ENST00000562670 PSCAO43653 123 aa9.17□□□□□ -0.94
CLK3-209ENST00000562670 C14orf177Q52M58 125 aa9.17□□□□□ -0.94
CLK3-209ENST00000562670 GCSHP23434 173 aa9.16□□□□□ -0.94
CLK3-209ENST00000562670 PTTG1IPP53801 180 aa9.16□□□□□ -0.94
CLK3-209ENST00000562670 HIGD2BQ4VC39 106 aa9.16□□□□□ -0.94
CLK3-209ENST00000562670 C2orf82Q6UX34 121 aa9.16□□□□□ -0.94
CLK3-209ENST00000562670 ERG28Q9UKR5 140 aa9.16□□□□□ -0.94
CLK3-209ENST00000562670 IFITM1P13164 125 aa9.15□□□□□ -0.94
CLK3-209ENST00000562670 MEIG1Q5JSS6 88 aa9.15□□□□□ -0.94
CLK3-209ENST00000562670 COPS9Q8WXC6 57 aa9.15□□□□□ -0.94
CLK3-209ENST00000562670 CAMK2N2Q96S95 79 aa9.15□□□□□ -0.94
CLK3-209ENST00000562670 HIST1H4GQ99525 98 aa9.15□□□□□ -0.94
CLK3-209ENST00000562670 DNAH10Q8IVF4 4471 aa9.14□□□□□ -0.95
CLK3-209ENST00000562670 LRCOL1A6NCL2 159 aa9.14□□□□□ -0.95
CLK3-209ENST00000562670 RNF151Q2KHN1 245 aa9.14□□□□□ -0.95
CLK3-209ENST00000562670 M0R2N4 97 aa9.13□□□□□ -0.95
CLK3-209ENST00000562670 SRSF9Q13242 221 aaKnown RBP eCLIP9.13□□□□□ -0.95
CLK3-209ENST00000562670 BVES-AS1Q5T3Y7 98 aa9.13□□□□□ -0.95
CLK3-209ENST00000562670 ADAMTSL4-AS1Q5T5F5 129 aa9.13□□□□□ -0.95
CLK3-209ENST00000562670 UNQ6190/PRO20217Q6UXQ8 127 aa9.13□□□□□ -0.95
CLK3-209ENST00000562670 CEND1Q8N111 149 aa9.13□□□□□ -0.95
CLK3-209ENST00000562670 SMIM13P0DJ93 91 aa9.12□□□□□ -0.95
CLK3-209ENST00000562670 CNBPP62633 177 aaKnown RBP9.12□□□□□ -0.95
CLK3-209ENST00000562670 SYCNQ0VAF6 134 aa9.12□□□□□ -0.95
CLK3-209ENST00000562670 C10orf25Q5T742 122 aa9.12□□□□□ -0.95
CLK3-209ENST00000562670 C1orf134Q5TEV5 83 aa9.12□□□□□ -0.95
CLK3-209ENST00000562670 LINC00526Q96FQ7 95 aa9.12□□□□□ -0.95
CLK3-209ENST00000562670 C6orf48Q9UBA6 75 aa9.12□□□□□ -0.95
CLK3-209ENST00000562670 DNAH2Q9P225 4427 aa9.11□□□□□ -0.95
CLK3-209ENST00000562670 LCE6AA0A183 80 aa9.11□□□□□ -0.95
CLK3-209ENST00000562670 WFDC2Q14508 124 aa9.11□□□□□ -0.95
CLK3-209ENST00000562670 Q6ZRU5 148 aa9.11□□□□□ -0.95
CLK3-209ENST00000562670 CARD19Q96LW7 228 aa9.11□□□□□ -0.95
CLK3-209ENST00000562670 LOC107984156A0A0G2JMH3 177 aa9.1□□□□□ -0.95
CLK3-209ENST00000562670 TMEM238LA0A1B0GVL6 79 aa9.1□□□□□ -0.95
CLK3-209ENST00000562670 A6NJY4 79 aa9.1□□□□□ -0.95
CLK3-209ENST00000562670 LINC00158P58513 81 aa9.1□□□□□ -0.95
CLK3-209ENST00000562670 ARL17AQ8IVW1 177 aa9.1□□□□□ -0.95
CLK3-209ENST00000562670 MIR7-3HGQ8N6C7 128 aa9.1□□□□□ -0.95
CLK3-209ENST00000562670 TLX1NBP0CAT3 122 aa9.09□□□□□ -0.95
CLK3-209ENST00000562670 HINT1P49773 126 aaPredicted RBP9.09□□□□□ -0.95
CLK3-209ENST00000562670 RPL24P83731 157 aaKnown RBP9.09□□□□□ -0.95
CLK3-209ENST00000562670 LINC00308Q8TCZ7 52 aa9.09□□□□□ -0.95
CLK3-209ENST00000562670 SNHG12Q9BXW3 62 aa9.09□□□□□ -0.95
CLK3-209ENST00000562670 LECT2O14960 151 aa9.08□□□□□ -0.96
CLK3-209ENST00000562670 SLPIP03973 132 aa9.08□□□□□ -0.96
CLK3-209ENST00000562670 PFN2P35080 140 aa9.08□□□□□ -0.96
CLK3-209ENST00000562670 FXYD2P54710 66 aa9.08□□□□□ -0.96
CLK3-209ENST00000562670 SACSQ9NZJ4 4579 aa9.08□□□□□ -0.96
CLK3-209ENST00000562670 A0A087WTM6 91 aa9.07□□□□□ -0.96
CLK3-209ENST00000562670 TRAV16A0A0A6YYK6 109 aaPredicted RBP9.07□□□□□ -0.96
CLK3-209ENST00000562670 NDUFC2-KCTD14E9PQ53 114 aa9.07□□□□□ -0.96
CLK3-209ENST00000562670 LBHQ53QV2 105 aaPredicted RBP9.07□□□□□ -0.96
CLK3-209ENST00000562670 C9orf116Q5BN46 136 aaPredicted RBP9.07□□□□□ -0.96
CLK3-209ENST00000562670 MUSTN1Q8IVN3 82 aa9.07□□□□□ -0.96
CLK3-209ENST00000562670 DAND5Q8N907 189 aa9.07□□□□□ -0.96
CLK3-209ENST00000562670 A0A1B0GWB2 263 aa9.06□□□□□ -0.96
CLK3-209ENST00000562670 A6NDN8 102 aa9.06□□□□□ -0.96
CLK3-209ENST00000562670 EREGO14944 169 aa9.06□□□□□ -0.96
CLK3-209ENST00000562670 SOSTDC1Q6X4U4 206 aa9.06□□□□□ -0.96
CLK3-209ENST00000562670 Q8N814 137 aa9.06□□□□□ -0.96
CLK3-209ENST00000562670 PKIGQ9Y2B9 76 aa9.06□□□□□ -0.96
CLK3-209ENST00000562670 DNAH17Q9UFH2 4485 aa9.05□□□□□ -0.96
CLK3-209ENST00000562670 FRAS1Q86XX4 4008 aa9.05□□□□□ -0.96
CLK3-209ENST00000562670 A0A0U1RRA0 63 aa9.05□□□□□ -0.96
CLK3-209ENST00000562670 SND1-IT1Q9HBX3 110 aa9.04□□□□□ -0.96
CLK3-209ENST00000562670 A0A0B4J2C4 111 aa9.03□□□□□ -0.96
CLK3-209ENST00000562670 A4D1N5 150 aa9.03□□□□□ -0.96
CLK3-209ENST00000562670 EIF4EBP3O60516 100 aaPredicted RBP9.03□□□□□ -0.96
CLK3-209ENST00000562670 NDUFC2O95298 119 aa9.03□□□□□ -0.96
CLK3-209ENST00000562670 BATFQ16520 125 aa9.03□□□□□ -0.96
CLK3-209ENST00000562670 LOC107984640A0A0U1RRK4 108 aa9.02□□□□□ -0.97
CLK3-209ENST00000562670 RTL8CO15255 209 aa9.02□□□□□ -0.97
CLK3-209ENST00000562670 COL5A1-AS1Q5SY13 56 aa9.02□□□□□ -0.97
CLK3-209ENST00000562670 Q6ZRP5 223 aa9.01□□□□□ -0.97
CLK3-209ENST00000562670 C9orf163Q8N9P6 203 aa9.01□□□□□ -0.97
CLK3-209ENST00000562670 NHP2Q9NX24 153 aaKnown RBP9.01□□□□□ -0.97
CLK3-209ENST00000562670 HYDINQ4G0P3 5121 aa9.01□□□□□ -0.97
CLK3-209ENST00000562670 CFC1BP0CG36 223 aa9□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 47 ms