RNA–Protein interactions for RNA: ENST00000561253.5

LRRC28-220, Transcript of leucine rich repeat containing 28, humanhuman

TSL 4

Gene LRRC28, Length 574 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LRRC28-220ENST00000561253 CLPSL2Q6UWE3 100 aa3.86□□□□□ -1.79
LRRC28-220ENST00000561253 SPANXA1Q9NS26 97 aa3.86□□□□□ -1.79
LRRC28-220ENST00000561253 LINC00959A0A1B0GUT2 108 aa3.85□□□□□ -1.79
LRRC28-220ENST00000561253 UBE2L6O14933 153 aa3.85□□□□□ -1.79
LRRC28-220ENST00000561253 ORMDL2Q53FV1 153 aa3.85□□□□□ -1.79
LRRC28-220ENST00000561253 RNASEKQ6P5S7 137 aaKnown RBP3.85□□□□□ -1.79
LRRC28-220ENST00000561253 ZNF664Q8N3J9 261 aa3.85□□□□□ -1.79
LRRC28-220ENST00000561253 OR5A1Q8NGJ0 315 aa3.85□□□□□ -1.79
LRRC28-220ENST00000561253 TOMM6Q96B49 74 aa3.85□□□□□ -1.79
LRRC28-220ENST00000561253 AMELXQ99217 191 aa3.85□□□□□ -1.79
LRRC28-220ENST00000561253 IGKV2D-24A0A075B6R9 120 aa3.84□□□□□ -1.79
LRRC28-220ENST00000561253 TRAV8-4A0A0B4J246 113 aa3.84□□□□□ -1.79
LRRC28-220ENST00000561253 FAM168BA1KXE4 195 aa3.84□□□□□ -1.79
LRRC28-220ENST00000561253 PDZD11Q5EBL8 140 aa3.84□□□□□ -1.79
LRRC28-220ENST00000561253 RNASE13Q5GAN3 156 aaKnown RBP3.84□□□□□ -1.79
LRRC28-220ENST00000561253 LCE1EQ5T753 118 aa3.84□□□□□ -1.79
LRRC28-220ENST00000561253 AMMECR1LQ6DCA0 310 aa3.84□□□□□ -1.79
LRRC28-220ENST00000561253 CHCHD10Q8WYQ3 142 aaPredicted RBP3.84□□□□□ -1.79
LRRC28-220ENST00000561253 TIMM17AQ99595 171 aa3.84□□□□□ -1.79
LRRC28-220ENST00000561253 CYSLTR1Q9Y271 337 aa3.84□□□□□ -1.79
LRRC28-220ENST00000561253 IGLV10-54A0A075B6I4 117 aa3.83□□□□□ -1.8
LRRC28-220ENST00000561253 IGHV3OR16-9A0A0B4J2B5 98 aa3.83□□□□□ -1.8
LRRC28-220ENST00000561253 NUPR1O60356 82 aa3.83□□□□□ -1.8
LRRC28-220ENST00000561253 HIST1H2BKO60814 126 aa3.83□□□□□ -1.8
LRRC28-220ENST00000561253 CRPP02741 224 aa3.83□□□□□ -1.8
LRRC28-220ENST00000561253 HIST1H2BJP06899 126 aa3.83□□□□□ -1.8
LRRC28-220ENST00000561253 LINC00614P0C842 121 aa3.83□□□□□ -1.8
LRRC28-220ENST00000561253 HIST1H2BOP23527 126 aa3.83□□□□□ -1.8
LRRC28-220ENST00000561253 HIST1H2BBP33778 126 aa3.83□□□□□ -1.8
LRRC28-220ENST00000561253 HIST1H2BDP58876 126 aa3.83□□□□□ -1.8
LRRC28-220ENST00000561253 HIST1H2BCP62807 126 aa3.83□□□□□ -1.8
LRRC28-220ENST00000561253 HIST2H2BEQ16778 126 aa3.83□□□□□ -1.8
LRRC28-220ENST00000561253 HIST2H2BFQ5QNW6 126 aaPredicted RBP3.83□□□□□ -1.8
LRRC28-220ENST00000561253 FAM19A3Q7Z5A8 133 aa3.83□□□□□ -1.8
LRRC28-220ENST00000561253 C15orf56Q8N910 161 aa3.83□□□□□ -1.8
LRRC28-220ENST00000561253 BAALCQ8WXS3 180 aa3.83□□□□□ -1.8
LRRC28-220ENST00000561253 HIST1H2BHQ93079 126 aa3.83□□□□□ -1.8
LRRC28-220ENST00000561253 RMI2Q96E14 147 aa3.83□□□□□ -1.8
LRRC28-220ENST00000561253 HIST1H2BNQ99877 126 aa3.83□□□□□ -1.8
LRRC28-220ENST00000561253 HIST1H2BMQ99879 126 aa3.83□□□□□ -1.8
LRRC28-220ENST00000561253 SRRM2Q9UQ35 2752 aaKnown RBP3.83□□□□□ -1.8
LRRC28-220ENST00000561253 ABCA13Q86UQ4 5058 aa3.83□□□□□ -1.8
LRRC28-220ENST00000561253 LECT2O14960 151 aa3.82□□□□□ -1.8
LRRC28-220ENST00000561253 CCL25O15444 150 aa3.82□□□□□ -1.8
LRRC28-220ENST00000561253 SERF1AO75920 110 aa3.82□□□□□ -1.8
LRRC28-220ENST00000561253 FUSP35637 526 aaKnown RBP eCLIP3.82□□□□□ -1.8
LRRC28-220ENST00000561253 UBE2D1P51668 147 aa3.82□□□□□ -1.8
LRRC28-220ENST00000561253 PMCHL1Q16048 86 aa3.82□□□□□ -1.8
LRRC28-220ENST00000561253 COA6Q5JTJ3 125 aaKnown RBP3.82□□□□□ -1.8
LRRC28-220ENST00000561253 FA2HQ7L5A8 372 aa3.82□□□□□ -1.8
LRRC28-220ENST00000561253 Q8N814 137 aa3.82□□□□□ -1.8
LRRC28-220ENST00000561253 CHCHD1Q96BP2 118 aaKnown RBP3.82□□□□□ -1.8
LRRC28-220ENST00000561253 TMEM141Q96I45 108 aa3.82□□□□□ -1.8
LRRC28-220ENST00000561253 TMEM101Q96IK0 257 aa3.82□□□□□ -1.8
LRRC28-220ENST00000561253 MYCBP2O75592 4640 aa3.82□□□□□ -1.8
LRRC28-220ENST00000561253 TRAV13-1A0A0B4J241 112 aa3.81□□□□□ -1.8
LRRC28-220ENST00000561253 IGKV3OR2-268A0A0C4DH90 116 aa3.81□□□□□ -1.8
LRRC28-220ENST00000561253 LINC01549A6NIU2 74 aa3.81□□□□□ -1.8
LRRC28-220ENST00000561253 C1orf196B1AJZ1 125 aa3.81□□□□□ -1.8
LRRC28-220ENST00000561253 E9PLD3 99 aa3.81□□□□□ -1.8
LRRC28-220ENST00000561253 HBDP02042 147 aa3.81□□□□□ -1.8
LRRC28-220ENST00000561253 XCL1P47992 114 aa3.81□□□□□ -1.8
LRRC28-220ENST00000561253 COX6A2Q02221 97 aa3.81□□□□□ -1.8
LRRC28-220ENST00000561253 SMAGPQ0VAQ4 97 aa3.81□□□□□ -1.8
LRRC28-220ENST00000561253 SPATA12Q7Z6I5 190 aa3.81□□□□□ -1.8
LRRC28-220ENST00000561253 GVQW2A0A096LPI5 108 aaPredicted RBP3.8□□□□□ -1.8
LRRC28-220ENST00000561253 PSCAO43653 123 aa3.8□□□□□ -1.8
LRRC28-220ENST00000561253 G0S2P27469 103 aa3.8□□□□□ -1.8
LRRC28-220ENST00000561253 KRTAP10-1P60331 282 aa3.8□□□□□ -1.8
LRRC28-220ENST00000561253 RAB5BP61020 215 aa3.8□□□□□ -1.8
LRRC28-220ENST00000561253 CNBPP62633 177 aaKnown RBP3.8□□□□□ -1.8
LRRC28-220ENST00000561253 LINC01620Q4KN68 170 aa3.8□□□□□ -1.8
LRRC28-220ENST00000561253 SCGB3A1Q96QR1 104 aa3.8□□□□□ -1.8
LRRC28-220ENST00000561253 CST9LQ9H4G1 147 aa3.8□□□□□ -1.8
LRRC28-220ENST00000561253 PCLOQ9Y6V0 5065 aa3.79□□□□□ -1.8
LRRC28-220ENST00000561253 IGLV4-69A0A075B6H9 119 aa3.79□□□□□ -1.8
LRRC28-220ENST00000561253 IGLV8-61A0A075B6I0 122 aa3.79□□□□□ -1.8
LRRC28-220ENST00000561253 KRTAP10-5P60370 271 aa3.79□□□□□ -1.8
LRRC28-220ENST00000561253 KIAA0087Q14695 138 aa3.79□□□□□ -1.8
LRRC28-220ENST00000561253 SS18Q15532 418 aa3.79□□□□□ -1.8
LRRC28-220ENST00000561253 LCE3CQ5T5A8 94 aa3.79□□□□□ -1.8
LRRC28-220ENST00000561253 TEX43Q6ZNM6 134 aa3.79□□□□□ -1.8
LRRC28-220ENST00000561253 Q6ZSA8 131 aa3.79□□□□□ -1.8
LRRC28-220ENST00000561253 LINC01561Q8N1V8 128 aa3.79□□□□□ -1.8
LRRC28-220ENST00000561253 FAM19A2Q8N3H0 131 aa3.79□□□□□ -1.8
LRRC28-220ENST00000561253 VCX2Q9H322 139 aa3.79□□□□□ -1.8
LRRC28-220ENST00000561253 PKHD1L1Q86WI1 4243 aa3.79□□□□□ -1.8
LRRC28-220ENST00000561253 IGHV3-64A0A075B6Q5 118 aa3.78□□□□□ -1.8
LRRC28-220ENST00000561253 A0A0J9YXV3 536 aa3.78□□□□□ -1.8
LRRC28-220ENST00000561253 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP3.78□□□□□ -1.8
LRRC28-220ENST00000561253 COX7A2LO14548 114 aa3.78□□□□□ -1.8
LRRC28-220ENST00000561253 IGLC3P0DOY3 106 aa3.78□□□□□ -1.8
LRRC28-220ENST00000561253 PMVKQ15126 192 aa3.78□□□□□ -1.8
LRRC28-220ENST00000561253 Q6ZN92 141 aa3.78□□□□□ -1.8
LRRC28-220ENST00000561253 C5orf38Q86SI9 138 aa3.78□□□□□ -1.8
LRRC28-220ENST00000561253 BAGE3Q86Y29 109 aa3.78□□□□□ -1.8
LRRC28-220ENST00000561253 IGLV2-33A0A075B6J2 118 aaPredicted RBP3.77□□□□□ -1.81
LRRC28-220ENST00000561253 TRAV12-1A0A0B4J245 112 aa3.77□□□□□ -1.81
LRRC28-220ENST00000561253 IGHV1-58A0A0C4DH39 117 aa3.77□□□□□ -1.81
LRRC28-220ENST00000561253 TINCRA0A1B0GVN0 87 aa3.77□□□□□ -1.81
Retrieved 100 of 20,778 RNA–protein pairs in 42.6 ms