RNA–Protein interactions for RNA: ENST00000560502.5

LDLR-213, Transcript of low density lipoprotein receptor, humanhuman

TSL 2

Gene LDLR, Length 509 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-213ENST00000560502 C2orf91Q6ZV80 131 aa9.29□□□□□ -0.92
LDLR-213ENST00000560502 NTN5Q8WTR8 489 aaPredicted RBP9.29□□□□□ -0.92
LDLR-213ENST00000560502 A0A087WZ39 114 aa9.28□□□□□ -0.92
LDLR-213ENST00000560502 IGLV5-52A0A0A0MRZ9 124 aa9.28□□□□□ -0.92
LDLR-213ENST00000560502 TRAV8-4A0A0B4J246 113 aa9.28□□□□□ -0.92
LDLR-213ENST00000560502 SMIM1B2RUZ4 78 aa9.28□□□□□ -0.92
LDLR-213ENST00000560502 FAM229AH3BQW9 127 aa9.28□□□□□ -0.92
LDLR-213ENST00000560502 M0R143 59 aa9.28□□□□□ -0.92
LDLR-213ENST00000560502 COX6A2Q02221 97 aa9.28□□□□□ -0.92
LDLR-213ENST00000560502 LBHQ53QV2 105 aaPredicted RBP9.28□□□□□ -0.92
LDLR-213ENST00000560502 SFTA2Q6UW10 78 aa9.28□□□□□ -0.92
LDLR-213ENST00000560502 LINC00269Q8N2A0 174 aa9.28□□□□□ -0.92
LDLR-213ENST00000560502 CRPP02741 224 aa9.27□□□□□ -0.93
LDLR-213ENST00000560502 CTAG1AP78358 180 aa9.27□□□□□ -0.93
LDLR-213ENST00000560502 HSD52Q0P140 79 aa9.27□□□□□ -0.93
LDLR-213ENST00000560502 TAL2Q16559 108 aa9.27□□□□□ -0.93
LDLR-213ENST00000560502 CD164L2Q6UWJ8 174 aa9.27□□□□□ -0.93
LDLR-213ENST00000560502 IBA57-AS1B1ANH7 110 aa9.26□□□□□ -0.93
LDLR-213ENST00000560502 SPINK8P0C7L1 97 aa9.26□□□□□ -0.93
LDLR-213ENST00000560502 TSPEAR-AS2P59090 65 aa9.26□□□□□ -0.93
LDLR-213ENST00000560502 MIAQ16674 131 aa9.26□□□□□ -0.93
LDLR-213ENST00000560502 Q8N814 137 aa9.26□□□□□ -0.93
LDLR-213ENST00000560502 IGKV3OR2-268A0A0C4DH90 116 aa9.25□□□□□ -0.93
LDLR-213ENST00000560502 SCGB1D4Q6XE38 83 aa9.25□□□□□ -0.93
LDLR-213ENST00000560502 TRAV8-3A0A0A6YYJ7 113 aa9.24□□□□□ -0.93
LDLR-213ENST00000560502 NDUFA1O15239 70 aa9.24□□□□□ -0.93
LDLR-213ENST00000560502 PSCAO43653 123 aa9.24□□□□□ -0.93
LDLR-213ENST00000560502 CHCHD10Q8WYQ3 142 aaPredicted RBP9.24□□□□□ -0.93
LDLR-213ENST00000560502 TTTY13Q9BZ97 58 aa9.24□□□□□ -0.93
LDLR-213ENST00000560502 FAM30AQ9NZY2 134 aa9.24□□□□□ -0.93
LDLR-213ENST00000560502 NDUFA12Q9UI09 145 aa9.24□□□□□ -0.93
LDLR-213ENST00000560502 KLK12Q9UKR0 248 aa9.24□□□□□ -0.93
LDLR-213ENST00000560502 IGHV3-64A0A075B6Q5 118 aa9.23□□□□□ -0.93
LDLR-213ENST00000560502 COX7A2LO14548 114 aa9.23□□□□□ -0.93
LDLR-213ENST00000560502 IGHV3-30P01768 117 aa9.23□□□□□ -0.93
LDLR-213ENST00000560502 IGHV3-33P01772 117 aa9.23□□□□□ -0.93
LDLR-213ENST00000560502 IGHV3-30-5P0DP03 117 aa9.23□□□□□ -0.93
LDLR-213ENST00000560502 XCL1P47992 114 aa9.23□□□□□ -0.93
LDLR-213ENST00000560502 HERV-K104P63124 156 aa9.23□□□□□ -0.93
LDLR-213ENST00000560502 CLPSL2Q6UWE3 100 aa9.23□□□□□ -0.93
LDLR-213ENST00000560502 SPANXB1Q9NS25 103 aaPredicted RBP9.23□□□□□ -0.93
LDLR-213ENST00000560502 TP73-AS1Q9UF72 201 aa9.23□□□□□ -0.93
LDLR-213ENST00000560502 TIMM17BO60830 172 aa9.22□□□□□ -0.93
LDLR-213ENST00000560502 ENHOQ6UWT2 76 aa9.22□□□□□ -0.93
LDLR-213ENST00000560502 Q6ZSA8 131 aa9.22□□□□□ -0.93
LDLR-213ENST00000560502 Q8N3U1 123 aa9.22□□□□□ -0.93
LDLR-213ENST00000560502 SNHG12Q9BXW3 62 aa9.22□□□□□ -0.93
LDLR-213ENST00000560502 TMEM238C9JI98 176 aa9.21□□□□□ -0.94
LDLR-213ENST00000560502 APOMO95445 188 aa9.21□□□□□ -0.94
LDLR-213ENST00000560502 COX7B2Q8TF08 81 aa9.21□□□□□ -0.94
LDLR-213ENST00000560502 Q9HAA7 133 aa9.21□□□□□ -0.94
LDLR-213ENST00000560502 CXCL5P42830 114 aa9.2□□□□□ -0.94
LDLR-213ENST00000560502 FOXI1Q12951 378 aa9.2□□□□□ -0.94
LDLR-213ENST00000560502 WFDC2Q14508 124 aa9.2□□□□□ -0.94
LDLR-213ENST00000560502 BVES-AS1Q5T3Y7 98 aa9.2□□□□□ -0.94
LDLR-213ENST00000560502 Q6ZVH6 145 aa9.2□□□□□ -0.94
LDLR-213ENST00000560502 Q8IZM0 81 aa9.2□□□□□ -0.94
LDLR-213ENST00000560502 UBE2WQ96B02 151 aa9.2□□□□□ -0.94
LDLR-213ENST00000560502 A0A0J9YXY3 114 aa9.19□□□□□ -0.94
LDLR-213ENST00000560502 J3QL48 77 aa9.19□□□□□ -0.94
LDLR-213ENST00000560502 C5orf38Q86SI9 138 aa9.19□□□□□ -0.94
LDLR-213ENST00000560502 ZNF625Q96I27 306 aaPredicted RBP9.19□□□□□ -0.94
LDLR-213ENST00000560502 TM2D2Q9BX73 214 aa9.19□□□□□ -0.94
LDLR-213ENST00000560502 KRTAP29-1A8MX34 341 aaPredicted RBP9.18□□□□□ -0.94
LDLR-213ENST00000560502 PRSS2P07478 247 aa9.18□□□□□ -0.94
LDLR-213ENST00000560502 MALP21145 153 aa9.18□□□□□ -0.94
LDLR-213ENST00000560502 HINT1P49773 126 aaPredicted RBP9.18□□□□□ -0.94
LDLR-213ENST00000560502 CIRBPQ14011 172 aaKnown RBP9.18□□□□□ -0.94
LDLR-213ENST00000560502 COL5A1-AS1Q5SY13 56 aa9.18□□□□□ -0.94
LDLR-213ENST00000560502 ORAOV1Q8WV07 137 aa9.18□□□□□ -0.94
LDLR-213ENST00000560502 RMI2Q96E14 147 aa9.18□□□□□ -0.94
LDLR-213ENST00000560502 HIST1H4GQ99525 98 aa9.18□□□□□ -0.94
LDLR-213ENST00000560502 C1orf43Q9BWL3 253 aa9.18□□□□□ -0.94
LDLR-213ENST00000560502 TMEM238LA0A1B0GVL6 79 aa9.17□□□□□ -0.94
LDLR-213ENST00000560502 GAGE12HA6NDE8 117 aa9.17□□□□□ -0.94
LDLR-213ENST00000560502 A6NDN8 102 aa9.17□□□□□ -0.94
LDLR-213ENST00000560502 A6NJY4 79 aa9.17□□□□□ -0.94
LDLR-213ENST00000560502 CEND1Q8N111 149 aa9.17□□□□□ -0.94
LDLR-213ENST00000560502 COPS9Q8WXC6 57 aa9.17□□□□□ -0.94
LDLR-213ENST00000560502 SPANXDQ9BXN6 97 aa9.17□□□□□ -0.94
LDLR-213ENST00000560502 PPDPFQ9H3Y8 114 aa9.17□□□□□ -0.94
LDLR-213ENST00000560502 SPANXCQ9NY87 97 aa9.17□□□□□ -0.94
LDLR-213ENST00000560502 IGLV10-54A0A075B6I4 117 aa9.16□□□□□ -0.94
LDLR-213ENST00000560502 PLA2G1BP04054 148 aaKnown RBP9.16□□□□□ -0.94
LDLR-213ENST00000560502 SRSF9Q13242 221 aaKnown RBP eCLIP9.16□□□□□ -0.94
LDLR-213ENST00000560502 LINC00528Q8N1L1 170 aa9.16□□□□□ -0.94
LDLR-213ENST00000560502 BATFQ16520 125 aa9.15□□□□□ -0.94
LDLR-213ENST00000560502 COX11Q9Y6N1 276 aa9.15□□□□□ -0.94
LDLR-213ENST00000560502 F8WDY8 70 aa9.14□□□□□ -0.95
LDLR-213ENST00000560502 IFITM1P13164 125 aa9.14□□□□□ -0.95
LDLR-213ENST00000560502 C6orf226Q5I0X4 101 aa9.14□□□□□ -0.95
LDLR-213ENST00000560502 CFAP161Q6P656 301 aa9.14□□□□□ -0.95
LDLR-213ENST00000560502 KRTAP26-1Q6PEX3 210 aa9.14□□□□□ -0.95
LDLR-213ENST00000560502 TOMM7Q9P0U1 55 aa9.14□□□□□ -0.95
LDLR-213ENST00000560502 HMCN2Q8NDA2 5059 aa9.14□□□□□ -0.95
LDLR-213ENST00000560502 LRP1Q07954 4544 aaKnown RBP9.13□□□□□ -0.95
LDLR-213ENST00000560502 LITAFQ99732 161 aa9.13□□□□□ -0.95
LDLR-213ENST00000560502 LECT2O14960 151 aa9.12□□□□□ -0.95
LDLR-213ENST00000560502 PTTG1IPP53801 180 aa9.12□□□□□ -0.95
LDLR-213ENST00000560502 KRTAP10-4P60372 401 aaPredicted RBP9.12□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 17.7 ms