RNA–Protein interactions for RNA: ENST00000558955.2

PKNOX1-208, Transcript of PBX/knotted 1 homeobox 1, humanhuman

TSL 2

Gene PKNOX1, Length 629 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PKNOX1-208ENST00000558955 TLX1NBP0CAT3 122 aa7.76□□□□□ -1.17
PKNOX1-208ENST00000558955 HERVK_113P63121 156 aa7.76□□□□□ -1.17
PKNOX1-208ENST00000558955 SEC11AP67812 179 aa7.76□□□□□ -1.17
PKNOX1-208ENST00000558955 GEMIN7Q9H840 131 aaKnown RBP7.76□□□□□ -1.17
PKNOX1-208ENST00000558955 TOMM7Q9P0U1 55 aa7.76□□□□□ -1.17
PKNOX1-208ENST00000558955 FAM168BA1KXE4 195 aa7.75□□□□□ -1.17
PKNOX1-208ENST00000558955 GAGE2EQ4V326 116 aa7.75□□□□□ -1.17
PKNOX1-208ENST00000558955 C18orf32Q8TCD1 76 aa7.75□□□□□ -1.17
PKNOX1-208ENST00000558955 URB1-AS1Q96HZ7 61 aa7.75□□□□□ -1.17
PKNOX1-208ENST00000558955 GAGE2DQ9UEU5 116 aa7.75□□□□□ -1.17
PKNOX1-208ENST00000558955 TRBV30A0A0K0K1B3 111 aa7.74□□□□□ -1.17
PKNOX1-208ENST00000558955 PRSS2P07478 247 aa7.74□□□□□ -1.17
PKNOX1-208ENST00000558955 PHF5AQ7RTV0 110 aaKnown RBP7.74□□□□□ -1.17
PKNOX1-208ENST00000558955 PACRGQ96M98 296 aaPredicted RBP7.74□□□□□ -1.17
PKNOX1-208ENST00000558955 CST9LQ9H4G1 147 aa7.74□□□□□ -1.17
PKNOX1-208ENST00000558955 A0A096LNJ9 63 aa7.73□□□□□ -1.17
PKNOX1-208ENST00000558955 LINC01549A6NIU2 74 aa7.73□□□□□ -1.17
PKNOX1-208ENST00000558955 LINC00614P0C842 121 aa7.73□□□□□ -1.17
PKNOX1-208ENST00000558955 CKS1BP61024 79 aa7.73□□□□□ -1.17
PKNOX1-208ENST00000558955 C6orf226Q5I0X4 101 aa7.73□□□□□ -1.17
PKNOX1-208ENST00000558955 Q8IZM0 81 aa7.73□□□□□ -1.17
PKNOX1-208ENST00000558955 LINC00469Q8N7U9 141 aa7.73□□□□□ -1.17
PKNOX1-208ENST00000558955 YPEL4Q96NS1 127 aa7.73□□□□□ -1.17
PKNOX1-208ENST00000558955 TINCRA0A1B0GVN0 87 aa7.72□□□□□ -1.17
PKNOX1-208ENST00000558955 NDUFC2-KCTD14E9PQ53 114 aa7.72□□□□□ -1.17
PKNOX1-208ENST00000558955 MT1HL1P0DM35 61 aa7.72□□□□□ -1.17
PKNOX1-208ENST00000558955 PMVKQ15126 192 aa7.72□□□□□ -1.17
PKNOX1-208ENST00000558955 PMCHL1Q16048 86 aa7.72□□□□□ -1.17
PKNOX1-208ENST00000558955 KRTAP7-1Q8IUC3 87 aa7.72□□□□□ -1.17
PKNOX1-208ENST00000558955 IGLV5-45A0A087WSX0 123 aa7.71□□□□□ -1.18
PKNOX1-208ENST00000558955 SMIM1B2RUZ4 78 aa7.71□□□□□ -1.18
PKNOX1-208ENST00000558955 FAM19A5Q7Z5A7 132 aaPredicted RBP7.71□□□□□ -1.18
PKNOX1-208ENST00000558955 PSORS1C2Q9UIG4 136 aa7.71□□□□□ -1.18
PKNOX1-208ENST00000558955 SRSF9Q13242 221 aaKnown RBP eCLIP7.7□□□□□ -1.18
PKNOX1-208ENST00000558955 C9orf129Q5T035 196 aaKnown RBP7.7□□□□□ -1.18
PKNOX1-208ENST00000558955 HBDP02042 147 aa7.69□□□□□ -1.18
PKNOX1-208ENST00000558955 SPINK8P0C7L1 97 aa7.69□□□□□ -1.18
PKNOX1-208ENST00000558955 NDUFA6P56556 154 aa7.69□□□□□ -1.18
PKNOX1-208ENST00000558955 PDZD11Q5EBL8 140 aa7.69□□□□□ -1.18
PKNOX1-208ENST00000558955 SPINK6Q6UWN8 80 aa7.69□□□□□ -1.18
PKNOX1-208ENST00000558955 KRTAP11-1Q8IUC1 163 aa7.69□□□□□ -1.18
PKNOX1-208ENST00000558955 CBLN2Q8IUK8 224 aa7.69□□□□□ -1.18
PKNOX1-208ENST00000558955 F8VRH5 84 aa7.68□□□□□ -1.18
PKNOX1-208ENST00000558955 SLC7A5P1Q8MH63 180 aa7.68□□□□□ -1.18
PKNOX1-208ENST00000558955 COX7B2Q8TF08 81 aa7.68□□□□□ -1.18
PKNOX1-208ENST00000558955 M0QXV9 152 aa7.67□□□□□ -1.18
PKNOX1-208ENST00000558955 IGLC3P0DOY3 106 aa7.67□□□□□ -1.18
PKNOX1-208ENST00000558955 CXCL5P42830 114 aa7.67□□□□□ -1.18
PKNOX1-208ENST00000558955 RAB5BP61020 215 aa7.67□□□□□ -1.18
PKNOX1-208ENST00000558955 C1orf137Q5JT78 98 aa7.67□□□□□ -1.18
PKNOX1-208ENST00000558955 XAGE1AQ9HD64 81 aa7.67□□□□□ -1.18
PKNOX1-208ENST00000558955 SERTAD4-AS1Q5TG53 156 aa7.66□□□□□ -1.18
PKNOX1-208ENST00000558955 LINC01600Q96MT4 127 aa7.66□□□□□ -1.18
PKNOX1-208ENST00000558955 ATP5LO75964 103 aa7.65□□□□□ -1.18
PKNOX1-208ENST00000558955 ZNF22P17026 224 aaPredicted RBP7.65□□□□□ -1.18
PKNOX1-208ENST00000558955 H3BRM9 83 aa7.64□□□□□ -1.19
PKNOX1-208ENST00000558955 REG3GQ6UW15 175 aa7.64□□□□□ -1.19
PKNOX1-208ENST00000558955 BAGE3Q86Y29 109 aa7.64□□□□□ -1.19
PKNOX1-208ENST00000558955 IGLV7-43P04211 117 aa7.63□□□□□ -1.19
PKNOX1-208ENST00000558955 UBE2BP63146 152 aa7.63□□□□□ -1.19
PKNOX1-208ENST00000558955 CHCHD1Q96BP2 118 aaKnown RBP7.63□□□□□ -1.19
PKNOX1-208ENST00000558955 IGLV5-39A0A0G2JS06 123 aa7.62□□□□□ -1.19
PKNOX1-208ENST00000558955 C11orf86A6NJI1 115 aa7.62□□□□□ -1.19
PKNOX1-208ENST00000558955 TRGC2P03986 189 aa7.62□□□□□ -1.19
PKNOX1-208ENST00000558955 C22orf24Q9Y442 160 aa7.62□□□□□ -1.19
PKNOX1-208ENST00000558955 TNXBP22105 4242 aa7.62□□□□□ -1.19
PKNOX1-208ENST00000558955 ODF1Q14990 250 aa7.61□□□□□ -1.19
PKNOX1-208ENST00000558955 KRTAP10-8P60410 259 aa7.6□□□□□ -1.19
PKNOX1-208ENST00000558955 TMEM170BQ5T4T1 132 aa7.6□□□□□ -1.19
PKNOX1-208ENST00000558955 FAM19A2Q8N3H0 131 aa7.6□□□□□ -1.19
PKNOX1-208ENST00000558955 IFI27L1Q96BM0 104 aa7.6□□□□□ -1.19
PKNOX1-208ENST00000558955 KRTAP4-8Q9BYQ9 185 aa7.6□□□□□ -1.19
PKNOX1-208ENST00000558955 CHTOPQ9Y3Y2 248 aaKnown RBP7.6□□□□□ -1.19
PKNOX1-208ENST00000558955 GHRHP01286 108 aa7.59□□□□□ -1.19
PKNOX1-208ENST00000558955 PLA2G2DQ9UNK4 145 aa7.59□□□□□ -1.19
PKNOX1-208ENST00000558955 HSBP1O75506 76 aa7.58□□□□□ -1.2
PKNOX1-208ENST00000558955 PFN2P35080 140 aa7.58□□□□□ -1.2
PKNOX1-208ENST00000558955 DIRC1Q969H9 104 aa7.58□□□□□ -1.2
PKNOX1-208ENST00000558955 TRAV12-1A0A0B4J245 112 aa7.57□□□□□ -1.2
PKNOX1-208ENST00000558955 COLCA2A8K830 154 aa7.57□□□□□ -1.2
PKNOX1-208ENST00000558955 LINC00310P59036 64 aa7.57□□□□□ -1.2
PKNOX1-208ENST00000558955 LBHQ53QV2 105 aaPredicted RBP7.57□□□□□ -1.2
PKNOX1-208ENST00000558955 MRPL55Q7Z7F7 128 aaKnown RBP7.57□□□□□ -1.2
PKNOX1-208ENST00000558955 ZNF625Q96I27 306 aaPredicted RBP7.57□□□□□ -1.2
PKNOX1-208ENST00000558955 TP73-AS1Q9UF72 201 aa7.57□□□□□ -1.2
PKNOX1-208ENST00000558955 H0Y9J4 135 aa7.56□□□□□ -1.2
PKNOX1-208ENST00000558955 SERF1AO75920 110 aa7.56□□□□□ -1.2
PKNOX1-208ENST00000558955 ERG28Q9UKR5 140 aa7.56□□□□□ -1.2
PKNOX1-208ENST00000558955 HMCN2Q8NDA2 5059 aa7.56□□□□□ -1.2
PKNOX1-208ENST00000558955 TMEM223A0PJW6 202 aa7.55□□□□□ -1.2
PKNOX1-208ENST00000558955 RPL37AP8A6NKH3 93 aa7.55□□□□□ -1.2
PKNOX1-208ENST00000558955 NUPR1O60356 82 aa7.55□□□□□ -1.2
PKNOX1-208ENST00000558955 LINC00167Q96N53 147 aa7.55□□□□□ -1.2
PKNOX1-208ENST00000558955 GAGE10A6NGK3 116 aa7.54□□□□□ -1.2
PKNOX1-208ENST00000558955 H0Y8G0 127 aa7.54□□□□□ -1.2
PKNOX1-208ENST00000558955 SCO1O75880 301 aa7.54□□□□□ -1.2
PKNOX1-208ENST00000558955 SND1-IT1Q9HBX3 110 aa7.54□□□□□ -1.2
PKNOX1-208ENST00000558955 IGLV5-37A0A075B6J1 123 aa7.53□□□□□ -1.2
PKNOX1-208ENST00000558955 LEPROTL1O95214 131 aa7.53□□□□□ -1.2
PKNOX1-208ENST00000558955 PRR26Q8N8Z3 221 aa7.53□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 61.8 ms