RNA–Protein interactions for RNA: ENST00000556422.5

TMEM260-210, Transcript of transmembrane protein 260, humanhuman

TSL 1 (best)

Gene TMEM260, Length 3,864 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM260-210ENST00000556422 RPL39LQ96EH5 51 aaKnown RBP3.67□□□□□ -1.82
TMEM260-210ENST00000556422 SNURFQ9Y675 71 aa3.67□□□□□ -1.82
TMEM260-210ENST00000556422 A0A087WVE0 104 aa3.67□□□□□ -1.82
TMEM260-210ENST00000556422 DNAJC9-AS1A6NH13 148 aa3.67□□□□□ -1.82
TMEM260-210ENST00000556422 EPM2AB3EWF7 344 aa3.67□□□□□ -1.82
TMEM260-210ENST00000556422 PHLDA3Q9Y5J5 127 aa3.67□□□□□ -1.82
TMEM260-210ENST00000556422 NSD1Q96L73 2696 aaPredicted RBP3.67□□□□□ -1.82
TMEM260-210ENST00000556422 TRAV23DV6A0A075B6W5 121 aa3.67□□□□□ -1.82
TMEM260-210ENST00000556422 IGKV3-20P01619 116 aa3.67□□□□□ -1.82
TMEM260-210ENST00000556422 LINC00313P59037 77 aa3.67□□□□□ -1.82
TMEM260-210ENST00000556422 C4orf3Q8WVX3 66 aa3.67□□□□□ -1.82
TMEM260-210ENST00000556422 OPRPNQ99935 248 aaPredicted RBP3.67□□□□□ -1.82
TMEM260-210ENST00000556422 LINC00588Q9Y4M8 146 aa3.67□□□□□ -1.82
TMEM260-210ENST00000556422 J3QL48 77 aa3.66□□□□□ -1.82
TMEM260-210ENST00000556422 SPINK13Q1W4C9 94 aa3.66□□□□□ -1.82
TMEM260-210ENST00000556422 MAPKAPK5-AS1Q8N8E1 139 aa3.66□□□□□ -1.82
TMEM260-210ENST00000556422 SMIM2Q9BVW6 85 aa3.66□□□□□ -1.82
TMEM260-210ENST00000556422 IGHV3-16A0A0C4DH30 117 aa3.66□□□□□ -1.82
TMEM260-210ENST00000556422 TMEM61Q8N0U2 210 aa3.66□□□□□ -1.82
TMEM260-210ENST00000556422 CELA1Q9UNI1 258 aa3.66□□□□□ -1.82
TMEM260-210ENST00000556422 TENM1Q9UKZ4 2725 aa3.66□□□□□ -1.82
TMEM260-210ENST00000556422 A8MTW9 85 aa3.66□□□□□ -1.82
TMEM260-210ENST00000556422 H0Y9J4 135 aa3.66□□□□□ -1.82
TMEM260-210ENST00000556422 H7BZZ5 65 aa3.66□□□□□ -1.82
TMEM260-210ENST00000556422 TRIAP1O43715 76 aa3.66□□□□□ -1.82
TMEM260-210ENST00000556422 LINC01554Q52M75 96 aa3.66□□□□□ -1.82
TMEM260-210ENST00000556422 UBE2D1P51668 147 aa3.65□□□□□ -1.82
TMEM260-210ENST00000556422 CXCL6P80162 114 aa3.65□□□□□ -1.82
TMEM260-210ENST00000556422 FAM30AQ9NZY2 134 aa3.65□□□□□ -1.82
TMEM260-210ENST00000556422 TRRAPQ9Y4A5 3859 aa3.65□□□□□ -1.82
TMEM260-210ENST00000556422 KLHL30-AS1Q8NEE0 82 aa3.65□□□□□ -1.83
TMEM260-210ENST00000556422 MGPP08493 103 aa3.65□□□□□ -1.83
TMEM260-210ENST00000556422 LINC00269Q8N2A0 174 aa3.65□□□□□ -1.83
TMEM260-210ENST00000556422 PRM2P04554 102 aa3.64□□□□□ -1.83
TMEM260-210ENST00000556422 SUMO4Q6EEV6 95 aa3.64□□□□□ -1.83
TMEM260-210ENST00000556422 TIMM21Q9BVV7 248 aa3.64□□□□□ -1.83
TMEM260-210ENST00000556422 IGHV1OR15-1A0A075B7D0 117 aa3.64□□□□□ -1.83
TMEM260-210ENST00000556422 TRAV13-2A0A0B4J235 113 aa3.64□□□□□ -1.83
TMEM260-210ENST00000556422 LOC100131303A0A0U1RQF7 123 aa3.64□□□□□ -1.83
TMEM260-210ENST00000556422 TMEM223A0PJW6 202 aa3.64□□□□□ -1.83
TMEM260-210ENST00000556422 DEFB131AP59861 70 aa3.64□□□□□ -1.83
TMEM260-210ENST00000556422 LYPD5Q6UWN5 251 aa3.64□□□□□ -1.83
TMEM260-210ENST00000556422 NOTCH3Q9UM47 2321 aa3.64□□□□□ -1.83
TMEM260-210ENST00000556422 HIVEP2P31629 2446 aa3.64□□□□□ -1.83
TMEM260-210ENST00000556422 H7C423 109 aa3.64□□□□□ -1.83
TMEM260-210ENST00000556422 POLR2KP53803 58 aaKnown RBP3.64□□□□□ -1.83
TMEM260-210ENST00000556422 DEFB114Q30KQ6 69 aa3.64□□□□□ -1.83
TMEM260-210ENST00000556422 SMCR5Q8TEV8 140 aa3.64□□□□□ -1.83
TMEM260-210ENST00000556422 RMI2Q96E14 147 aa3.64□□□□□ -1.83
TMEM260-210ENST00000556422 MAP6D1Q9H9H5 199 aa3.64□□□□□ -1.83
TMEM260-210ENST00000556422 Q9HAA7 133 aa3.64□□□□□ -1.83
TMEM260-210ENST00000556422 LRCOL1A6NCL2 159 aa3.63□□□□□ -1.83
TMEM260-210ENST00000556422 CHKB-CPT1BH3BT56 60 aa3.63□□□□□ -1.83
TMEM260-210ENST00000556422 CD28P10747 220 aa3.63□□□□□ -1.83
TMEM260-210ENST00000556422 MRPL35Q9NZE8 188 aaKnown RBP3.63□□□□□ -1.83
TMEM260-210ENST00000556422 HIVEP1P15822 2718 aa3.63□□□□□ -1.83
TMEM260-210ENST00000556422 M0QY20 66 aa3.63□□□□□ -1.83
TMEM260-210ENST00000556422 TSHBP01222 138 aa3.63□□□□□ -1.83
TMEM260-210ENST00000556422 PLNP26678 52 aa3.63□□□□□ -1.83
TMEM260-210ENST00000556422 ODF3L2Q3SX64 289 aa3.63□□□□□ -1.83
TMEM260-210ENST00000556422 C11orf72Q8NBR9 251 aa3.63□□□□□ -1.83
TMEM260-210ENST00000556422 LINC01006Q8NI28 216 aa3.63□□□□□ -1.83
TMEM260-210ENST00000556422 DEFB104AQ8WTQ1 72 aa3.63□□□□□ -1.83
TMEM260-210ENST00000556422 DIRC1Q969H9 104 aa3.63□□□□□ -1.83
TMEM260-210ENST00000556422 NDUFA12Q9UI09 145 aa3.63□□□□□ -1.83
TMEM260-210ENST00000556422 RNASE1P07998 156 aaKnown RBP3.62□□□□□ -1.83
TMEM260-210ENST00000556422 FAM74A4Q5TZK3 123 aa3.62□□□□□ -1.83
TMEM260-210ENST00000556422 C2orf66Q6UXQ4 117 aa3.62□□□□□ -1.83
TMEM260-210ENST00000556422 ATP11AUNQ6ZP68 121 aa3.62□□□□□ -1.83
TMEM260-210ENST00000556422 SCXQ7RTU7 201 aa3.62□□□□□ -1.83
TMEM260-210ENST00000556422 SMR3AQ99954 134 aa3.62□□□□□ -1.83
TMEM260-210ENST00000556422 FN1P02751 2386 aaKnown RBP3.62□□□□□ -1.83
TMEM260-210ENST00000556422 TRAV7A0A075B6U4 112 aa3.62□□□□□ -1.83
TMEM260-210ENST00000556422 TRAV12-1A0A0B4J245 112 aa3.62□□□□□ -1.83
TMEM260-210ENST00000556422 TRBV6-5A0A0K0K1A5 114 aa3.62□□□□□ -1.83
TMEM260-210ENST00000556422 SDHAF1A6NFY7 115 aa3.62□□□□□ -1.83
TMEM260-210ENST00000556422 Q6JHZ5 121 aa3.62□□□□□ -1.83
TMEM260-210ENST00000556422 PHF5AQ7RTV0 110 aaKnown RBP3.62□□□□□ -1.83
TMEM260-210ENST00000556422 IGIPA6NJ69 53 aa3.61□□□□□ -1.83
TMEM260-210ENST00000556422 PPP1R17O96001 155 aa3.61□□□□□ -1.83
TMEM260-210ENST00000556422 IGHV3-33P01772 117 aa3.61□□□□□ -1.83
TMEM260-210ENST00000556422 RPL39P62891 51 aaKnown RBP3.61□□□□□ -1.83
TMEM260-210ENST00000556422 KRTAP21-3Q3LHN1 58 aa3.61□□□□□ -1.83
TMEM260-210ENST00000556422 MUSTN1Q8IVN3 82 aa3.61□□□□□ -1.83
TMEM260-210ENST00000556422 F8VRH5 84 aa3.61□□□□□ -1.83
TMEM260-210ENST00000556422 TMEM141Q96I45 108 aa3.61□□□□□ -1.83
TMEM260-210ENST00000556422 ANK2Q01484 3957 aa3.61□□□□□ -1.83
TMEM260-210ENST00000556422 A0A0J9YXV3 536 aa3.61□□□□□ -1.83
TMEM260-210ENST00000556422 PROK1P58294 105 aa3.61□□□□□ -1.83
TMEM260-210ENST00000556422 DEFB121Q5J5C9 76 aa3.61□□□□□ -1.83
TMEM260-210ENST00000556422 LINC00337Q8N6G1 96 aa3.61□□□□□ -1.83
TMEM260-210ENST00000556422 SCGB3A1Q96QR1 104 aa3.61□□□□□ -1.83
TMEM260-210ENST00000556422 HTN1P15515 57 aa3.6□□□□□ -1.83
TMEM260-210ENST00000556422 IGLV4-69A0A075B6H9 119 aa3.6□□□□□ -1.83
TMEM260-210ENST00000556422 HCG22E2RYF7 251 aa3.6□□□□□ -1.83
TMEM260-210ENST00000556422 A6NED7 52 aa3.6□□□□□ -1.83
TMEM260-210ENST00000556422 LCE2BO14633 110 aa3.6□□□□□ -1.83
TMEM260-210ENST00000556422 FAM229BQ4G0N7 80 aa3.6□□□□□ -1.83
TMEM260-210ENST00000556422 Q6ZSN1 163 aa3.6□□□□□ -1.83
TMEM260-210ENST00000556422 RETNLBQ9BQ08 111 aa3.6□□□□□ -1.83
Retrieved 100 of 20,778 RNA–protein pairs in 107.9 ms