RNA–Protein interactions for RNA: ENST00000555953.1

SCFD1-217, Transcript of sec1 family domain containing 1, humanhuman

TSL 5

Gene SCFD1, Length 497 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-217ENST00000555953 WNK2Q9Y3S1 2297 aa0.02□□□□□ -2.41
SCFD1-217ENST00000555953 KNDC1Q76NI1 1749 aa0.02□□□□□ -2.41
SCFD1-217ENST00000555953 TRBV7-4A0A0J9YYF1 115 aa0.02□□□□□ -2.41
SCFD1-217ENST00000555953 TRBV7-7A0A0K0K1E9 115 aa0.02□□□□□ -2.41
SCFD1-217ENST00000555953 F8WEM9 126 aa0.02□□□□□ -2.41
SCFD1-217ENST00000555953 UQCRHP07919 91 aa0.02□□□□□ -2.41
SCFD1-217ENST00000555953 ARMS2P0C7Q2 107 aa0.02□□□□□ -2.41
SCFD1-217ENST00000555953 PMCHL1Q16048 86 aa0.02□□□□□ -2.41
SCFD1-217ENST00000555953 Q5VSD8 79 aa0.02□□□□□ -2.41
SCFD1-217ENST00000555953 C6orf201Q7Z4U5 140 aa0.02□□□□□ -2.41
SCFD1-217ENST00000555953 LINC00846Q9NV44 126 aa0.02□□□□□ -2.41
SCFD1-217ENST00000555953 HMCN2Q8NDA2 5059 aa0.02□□□□□ -2.41
SCFD1-217ENST00000555953 GAPVD1Q14C86 1478 aa0.02□□□□□ -2.41
SCFD1-217ENST00000555953 FYCO1Q9BQS8 1478 aa0.02□□□□□ -2.41
SCFD1-217ENST00000555953 C2CD3Q4AC94 2353 aa0.02□□□□□ -2.41
SCFD1-217ENST00000555953 ABCA2Q9BZC7 2435 aa0.01□□□□□ -2.41
SCFD1-217ENST00000555953 A0A1B0GU69 56 aa0.01□□□□□ -2.41
SCFD1-217ENST00000555953 NDUFC1O43677 76 aa0.01□□□□□ -2.41
SCFD1-217ENST00000555953 PIGYQ3MUY2 71 aa0.01□□□□□ -2.41
SCFD1-217ENST00000555953 LELP1Q5T871 98 aa0.01□□□□□ -2.41
SCFD1-217ENST00000555953 PRO1933Q9H354 126 aa0.01□□□□□ -2.41
SCFD1-217ENST00000555953 NUP188Q5SRE5 1749 aa0.01□□□□□ -2.41
SCFD1-217ENST00000555953 PAPPA2Q9BXP8 1791 aa0.01□□□□□ -2.41
SCFD1-217ENST00000555953 MYO7BQ6PIF6 2116 aa0.01□□□□□ -2.41
SCFD1-217ENST00000555953 DOPEY2Q9Y3R5 2298 aa0.01□□□□□ -2.41
SCFD1-217ENST00000555953 CACNA1AO00555 2505 aa0.01□□□□□ -2.41
SCFD1-217ENST00000555953 H0Y9P7 68 aa0□□□□□ -2.41
SCFD1-217ENST00000555953 LINC00032P0C843 101 aa0□□□□□ -2.41
SCFD1-217ENST00000555953 S100A3P33764 101 aa0□□□□□ -2.41
SCFD1-217ENST00000555953 COL7A1Q02388 2944 aa0□□□□□ -2.41
SCFD1-217ENST00000555953 TCHHQ07283 1943 aa0□□□□□ -2.41
SCFD1-217ENST00000555953 MON2Q7Z3U7 1717 aa0□□□□□ -2.41
SCFD1-217ENST00000555953 RAPGEF2Q9Y4G8 1499 aa0□□□□□ -2.41
SCFD1-217ENST00000555953 FAT2Q9NYQ8 4349 aa-0.01□□□□□ -2.41
SCFD1-217ENST00000555953 XRN1Q8IZH2 1706 aaKnown RBP-0.01□□□□□ -2.41
SCFD1-217ENST00000555953 ANKRD26Q9UPS8 1709 aa-0.01□□□□□ -2.41
SCFD1-217ENST00000555953 COX6B1P14854 86 aa-0.01□□□□□ -2.41
SCFD1-217ENST00000555953 DEFB112Q30KQ8 113 aa-0.01□□□□□ -2.41
SCFD1-217ENST00000555953 SPRR2GQ9BYE4 73 aa-0.01□□□□□ -2.41
SCFD1-217ENST00000555953 FXYD6Q9H0Q3 95 aa-0.01□□□□□ -2.41
SCFD1-217ENST00000555953 PLCE1Q9P212 2302 aa-0.01□□□□□ -2.41
SCFD1-217ENST00000555953 HSPG2P98160 4391 aa-0.01□□□□□ -2.41
SCFD1-217ENST00000555953 KIAA0556O60303 1618 aa-0.02□□□□□ -2.41
SCFD1-217ENST00000555953 TARBP1Q13395 1621 aaKnown RBP-0.02□□□□□ -2.41
SCFD1-217ENST00000555953 AKAP6Q13023 2319 aa-0.02□□□□□ -2.41
SCFD1-217ENST00000555953 ANKRD17O75179 2603 aaKnown RBP-0.02□□□□□ -2.41
SCFD1-217ENST00000555953 UQCRHLA0A096LP55 91 aa-0.02□□□□□ -2.41
SCFD1-217ENST00000555953 H3BQF6 201 aa-0.02□□□□□ -2.41
SCFD1-217ENST00000555953 IGLC2P0DOY2 106 aa-0.02□□□□□ -2.41
SCFD1-217ENST00000555953 IGLC3P0DOY3 106 aa-0.02□□□□□ -2.41
SCFD1-217ENST00000555953 GNGT1P63211 74 aa-0.02□□□□□ -2.41
SCFD1-217ENST00000555953 ETDBQ3ZM63 59 aa-0.02□□□□□ -2.41
SCFD1-217ENST00000555953 APLNQ9ULZ1 77 aa-0.02□□□□□ -2.41
SCFD1-217ENST00000555953 USF3Q68DE3 2245 aa-0.02□□□□□ -2.41
SCFD1-217ENST00000555953 TENM4Q6N022 2769 aa-0.02□□□□□ -2.41
SCFD1-217ENST00000555953 PIEZO2Q9H5I5 2752 aa-0.02□□□□□ -2.41
SCFD1-217ENST00000555953 CHD6Q8TD26 2715 aa-0.02□□□□□ -2.41
SCFD1-217ENST00000555953 PTPN13Q12923 2485 aa-0.03□□□□□ -2.41
SCFD1-217ENST00000555953 EDC4Q6P2E9 1401 aaKnown RBP-0.03□□□□□ -2.41
SCFD1-217ENST00000555953 PTPRQQ9UMZ3 2332 aa-0.03□□□□□ -2.41
SCFD1-217ENST00000555953 HUWE1Q7Z6Z7 4374 aaKnown RBP-0.03□□□□□ -2.41
SCFD1-217ENST00000555953 LEPROTL1O95214 131 aa-0.03□□□□□ -2.41
SCFD1-217ENST00000555953 CUX1P39880 1505 aa-0.03□□□□□ -2.41
SCFD1-217ENST00000555953 NEXMIFQ5QGS0 1516 aa-0.03□□□□□ -2.41
SCFD1-217ENST00000555953 LPAP08519 4548 aa-0.03□□□□□ -2.41
SCFD1-217ENST00000555953 AKAP12Q02952 1782 aa-0.04□□□□□ -2.42
SCFD1-217ENST00000555953 FMN2Q9NZ56 1722 aa-0.04□□□□□ -2.42
SCFD1-217ENST00000555953 MYCBP2O75592 4640 aa-0.04□□□□□ -2.42
SCFD1-217ENST00000555953 D6R8Y8 96 aa-0.04□□□□□ -2.42
SCFD1-217ENST00000555953 TDRG1Q3Y452 100 aa-0.04□□□□□ -2.42
SCFD1-217ENST00000555953 MUSTN1Q8IVN3 82 aa-0.04□□□□□ -2.42
SCFD1-217ENST00000555953 DEFB105AQ8NG35 78 aa-0.04□□□□□ -2.42
SCFD1-217ENST00000555953 VWFP04275 2813 aa-0.04□□□□□ -2.42
SCFD1-217ENST00000555953 FLNCQ14315 2725 aa-0.05□□□□□ -2.42
SCFD1-217ENST00000555953 PDCD11Q14690 1871 aaKnown RBP-0.05□□□□□ -2.42
SCFD1-217ENST00000555953 CPSF4LA6NMK7 179 aaKnown RBP-0.05□□□□□ -2.42
SCFD1-217ENST00000555953 H1FX-AS1Q4G0G2 97 aa-0.05□□□□□ -2.42
SCFD1-217ENST00000555953 GPR98Q8WXG9 6306 aa-0.05□□□□□ -2.42
SCFD1-217ENST00000555953 PKDREJQ9NTG1 2253 aa-0.05□□□□□ -2.42
SCFD1-217ENST00000555953 NKTRP30414 1462 aaKnown RBP-0.05□□□□□ -2.42
SCFD1-217ENST00000555953 SAMD9Q5K651 1589 aa-0.06□□□□□ -2.42
SCFD1-217ENST00000555953 SETBP1Q9Y6X0 1596 aa-0.06□□□□□ -2.42
SCFD1-217ENST00000555953 IQCF6A8MYZ5 107 aa-0.06□□□□□ -2.42
SCFD1-217ENST00000555953 K7EP34 96 aa-0.06□□□□□ -2.42
SCFD1-217ENST00000555953 C9orf62Q8N4C0 152 aa-0.06□□□□□ -2.42
SCFD1-217ENST00000555953 UBE2D4Q9Y2X8 147 aa-0.06□□□□□ -2.42
SCFD1-217ENST00000555953 KMT2AQ03164 3969 aa-0.06□□□□□ -2.42
SCFD1-217ENST00000555953 UBR1Q8IWV7 1749 aa-0.07□□□□□ -2.42
SCFD1-217ENST00000555953 ALMS1Q8TCU4 4167 aa-0.07□□□□□ -2.42
SCFD1-217ENST00000555953 GVINP1Q7Z2Y8 2422 aa-0.07□□□□□ -2.42
SCFD1-217ENST00000555953 ATP10BO94823 1461 aa-0.07□□□□□ -2.42
SCFD1-217ENST00000555953 IQSEC2Q5JU85 1478 aa-0.07□□□□□ -2.42
SCFD1-217ENST00000555953 SPTBN1Q01082 2364 aaKnown RBP-0.07□□□□□ -2.42
SCFD1-217ENST00000555953 TSC2P49815 1807 aa-0.07□□□□□ -2.42
SCFD1-217ENST00000555953 SPRR2DP22532 72 aa-0.07□□□□□ -2.42
SCFD1-217ENST00000555953 ZNF720Q7Z2F6 126 aa-0.07□□□□□ -2.42
SCFD1-217ENST00000555953 Q9H521 79 aa-0.07□□□□□ -2.42
SCFD1-217ENST00000555953 TROQ12816 1431 aaPredicted RBP-0.07□□□□□ -2.42
SCFD1-217ENST00000555953 CEP162Q5TB80 1403 aa-0.07□□□□□ -2.42
SCFD1-217ENST00000555953 SMARCA2P51531 1590 aa-0.07□□□□□ -2.42
Retrieved 100 of 20,778 RNA–protein pairs in 41.3 ms