RNA–Protein interactions for RNA: ENST00000555934.1

LINC00643-204, long intergenic non-protein coding RNA 643, humanhuman

TSL 2

Gene LINC00643, Length 1,184 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643-204ENST00000555934 SIP14410 1827 aa1.82□□□□□ -2.12
LINC00643-204ENST00000555934 SSC5DA1L4H1 1573 aa1.82□□□□□ -2.12
LINC00643-204ENST00000555934 CEP192Q8TEP8 1941 aa1.82□□□□□ -2.12
LINC00643-204ENST00000555934 MYMXA0A1B0GTQ4 84 aa1.82□□□□□ -2.12
LINC00643-204ENST00000555934 FAM223BA6NKX1 122 aa1.82□□□□□ -2.12
LINC00643-204ENST00000555934 DNAL4O96015 105 aa1.82□□□□□ -2.12
LINC00643-204ENST00000555934 DEFB121Q5J5C9 76 aa1.82□□□□□ -2.12
LINC00643-204ENST00000555934 Q86TA4 180 aa1.82□□□□□ -2.12
LINC00643-204ENST00000555934 COX7B2Q8TF08 81 aa1.82□□□□□ -2.12
LINC00643-204ENST00000555934 WFDC10AQ9H1F0 79 aa1.82□□□□□ -2.12
LINC00643-204ENST00000555934 PSENENQ9NZ42 101 aa1.82□□□□□ -2.12
LINC00643-204ENST00000555934 ARL2-SNX15V9GYD0 113 aa1.82□□□□□ -2.12
LINC00643-204ENST00000555934 NRAPQ86VF7 1730 aa1.82□□□□□ -2.12
LINC00643-204ENST00000555934 DOT1LQ8TEK3 1739 aa1.82□□□□□ -2.12
LINC00643-204ENST00000555934 BTAF1O14981 1849 aa1.82□□□□□ -2.12
LINC00643-204ENST00000555934 A0A087WXM4 84 aa1.81□□□□□ -2.12
LINC00643-204ENST00000555934 IGLV3-32A0A0A0MS00 114 aa1.81□□□□□ -2.12
LINC00643-204ENST00000555934 IGKV3D-7A0A0C4DH55 119 aa1.81□□□□□ -2.12
LINC00643-204ENST00000555934 IGKV3OR2-268A0A0C4DH90 116 aa1.81□□□□□ -2.12
LINC00643-204ENST00000555934 SFTA3P0C7M3 94 aa1.81□□□□□ -2.12
LINC00643-204ENST00000555934 LYNX1P0DP58 116 aa1.81□□□□□ -2.12
LINC00643-204ENST00000555934 PLGLAQ15195 96 aa1.81□□□□□ -2.12
LINC00643-204ENST00000555934 HELZ2Q9BYK8 2649 aaKnown RBP1.81□□□□□ -2.12
LINC00643-204ENST00000555934 PDCD11Q14690 1871 aaKnown RBP1.8□□□□□ -2.12
LINC00643-204ENST00000555934 A0A1B0GWA3 101 aa1.8□□□□□ -2.12
LINC00643-204ENST00000555934 CEBPZOSA8MTT3 80 aa1.8□□□□□ -2.12
LINC00643-204ENST00000555934 ARMS2P0C7Q2 107 aa1.8□□□□□ -2.12
LINC00643-204ENST00000555934 RPL37AP61513 92 aaKnown RBP1.8□□□□□ -2.12
LINC00643-204ENST00000555934 FAM74A4Q5TZK3 123 aa1.8□□□□□ -2.12
LINC00643-204ENST00000555934 C6orf201Q7Z4U5 140 aa1.8□□□□□ -2.12
LINC00643-204ENST00000555934 AMELXQ99217 191 aa1.8□□□□□ -2.12
LINC00643-204ENST00000555934 KRTAP4-1Q9BYQ7 146 aa1.8□□□□□ -2.12
LINC00643-204ENST00000555934 LEPROTL1O95214 131 aa1.79□□□□□ -2.12
LINC00643-204ENST00000555934 SPINT3P49223 89 aa1.79□□□□□ -2.12
LINC00643-204ENST00000555934 CCL18P55774 89 aa1.79□□□□□ -2.12
LINC00643-204ENST00000555934 DEFB132Q7Z7B7 95 aa1.79□□□□□ -2.12
LINC00643-204ENST00000555934 PRR15LQ9BU68 103 aa1.79□□□□□ -2.12
LINC00643-204ENST00000555934 TMEM14CQ9P0S9 112 aa1.79□□□□□ -2.12
LINC00643-204ENST00000555934 R4GMQ9 66 aa1.79□□□□□ -2.12
LINC00643-204ENST00000555934 ARFGEF1Q9Y6D6 1849 aa1.79□□□□□ -2.12
LINC00643-204ENST00000555934 KIAA0100Q14667 2235 aaKnown RBP1.79□□□□□ -2.12
LINC00643-204ENST00000555934 BRWD1Q9NSI6 2320 aa1.79□□□□□ -2.12
LINC00643-204ENST00000555934 LY75O60449 1722 aa1.78□□□□□ -2.12
LINC00643-204ENST00000555934 IGKV2-40A0A087WW87 121 aaPredicted RBP1.78□□□□□ -2.12
LINC00643-204ENST00000555934 NBDYA0A0U1RRE5 68 aa1.78□□□□□ -2.12
LINC00643-204ENST00000555934 F8VRH5 84 aa1.78□□□□□ -2.12
LINC00643-204ENST00000555934 FXYD1O00168 92 aa1.78□□□□□ -2.12
LINC00643-204ENST00000555934 IGKV2D-40P01614 121 aaPredicted RBP1.78□□□□□ -2.12
LINC00643-204ENST00000555934 COX8AP10176 69 aa1.78□□□□□ -2.12
LINC00643-204ENST00000555934 IL9P15248 144 aa1.78□□□□□ -2.12
LINC00643-204ENST00000555934 GCHFRP30047 84 aa1.78□□□□□ -2.12
LINC00643-204ENST00000555934 FXYD3Q14802 87 aa1.78□□□□□ -2.12
LINC00643-204ENST00000555934 Q6JHZ5 121 aa1.78□□□□□ -2.12
LINC00643-204ENST00000555934 LINC00322Q6ZN03 302 aaPredicted RBP1.78□□□□□ -2.12
LINC00643-204ENST00000555934 PPP1R1CQ8WVI7 109 aa1.78□□□□□ -2.12
LINC00643-204ENST00000555934 PROK2Q9HC23 129 aa1.78□□□□□ -2.12
LINC00643-204ENST00000555934 INTS1Q8N201 2190 aaKnown RBP1.78□□□□□ -2.13
LINC00643-204ENST00000555934 ESPL1Q14674 2120 aa1.78□□□□□ -2.13
LINC00643-204ENST00000555934 MED12Q93074 2177 aa1.77□□□□□ -2.13
LINC00643-204ENST00000555934 D6R8Y8 96 aa1.77□□□□□ -2.13
LINC00643-204ENST00000555934 MUSTN1Q8IVN3 82 aa1.77□□□□□ -2.13
LINC00643-204ENST00000555934 V9GYV3 84 aa1.77□□□□□ -2.13
LINC00643-204ENST00000555934 UNC13CQ8NB66 2214 aa1.76□□□□□ -2.13
LINC00643-204ENST00000555934 A0A087WTM6 91 aa1.76□□□□□ -2.13
LINC00643-204ENST00000555934 M0R135 149 aa1.76□□□□□ -2.13
LINC00643-204ENST00000555934 INE1O15225 51 aa1.76□□□□□ -2.13
LINC00643-204ENST00000555934 ANGP03950 147 aaKnown RBP1.76□□□□□ -2.13
LINC00643-204ENST00000555934 C5orf56Q8N8D9 126 aa1.76□□□□□ -2.13
LINC00643-204ENST00000555934 HILPDAQ9Y5L2 63 aa1.76□□□□□ -2.13
LINC00643-204ENST00000555934 LINC01558Q9Y6Z2 57 aa1.76□□□□□ -2.13
LINC00643-204ENST00000555934 LOC285556D6RIA3 1793 aa1.76□□□□□ -2.13
LINC00643-204ENST00000555934 DOCK11Q5JSL3 2073 aa1.76□□□□□ -2.13
LINC00643-204ENST00000555934 SPTBP11277 2137 aa1.75□□□□□ -2.13
LINC00643-204ENST00000555934 PI4KAP42356 2102 aa1.75□□□□□ -2.13
LINC00643-204ENST00000555934 LOC110117498A0A087WWA1 95 aa1.75□□□□□ -2.13
LINC00643-204ENST00000555934 M0R2N4 97 aa1.75□□□□□ -2.13
LINC00643-204ENST00000555934 M0R3E3 92 aa1.75□□□□□ -2.13
LINC00643-204ENST00000555934 UQCR11O14957 56 aa1.75□□□□□ -2.13
LINC00643-204ENST00000555934 FXYD4P59646 89 aa1.75□□□□□ -2.13
LINC00643-204ENST00000555934 ATP5EP2Q5VTU8 51 aa1.75□□□□□ -2.13
LINC00643-204ENST00000555934 SMIM5Q71RC9 77 aa1.75□□□□□ -2.13
LINC00643-204ENST00000555934 BAGE2Q86Y30 109 aa1.75□□□□□ -2.13
LINC00643-204ENST00000555934 FDCSPQ8NFU4 85 aa1.75□□□□□ -2.13
LINC00643-204ENST00000555934 UBE2D4Q9Y2X8 147 aa1.75□□□□□ -2.13
LINC00643-204ENST00000555934 KMT2BQ9UMN6 2715 aaPredicted RBP1.75□□□□□ -2.13
LINC00643-204ENST00000555934 UBR3Q6ZT12 1888 aa1.75□□□□□ -2.13
LINC00643-204ENST00000555934 ARFGEF3Q5TH69 2177 aa1.74□□□□□ -2.13
LINC00643-204ENST00000555934 A0A087WVE0 104 aa1.74□□□□□ -2.13
LINC00643-204ENST00000555934 CTXND1A0A1B0GTU2 59 aa1.74□□□□□ -2.13
LINC00643-204ENST00000555934 C3orf79P0CE67 100 aa1.74□□□□□ -2.13
LINC00643-204ENST00000555934 IFI27P40305 119 aaPredicted RBP1.74□□□□□ -2.13
LINC00643-204ENST00000555934 DEFB107AQ8IZN7 70 aa1.74□□□□□ -2.13
LINC00643-204ENST00000555934 WFDC6Q9BQY6 131 aa1.74□□□□□ -2.13
LINC00643-204ENST00000555934 TNRC6BQ9UPQ9 1833 aaKnown RBP1.74□□□□□ -2.13
LINC00643-204ENST00000555934 SPAG17Q6Q759 2223 aa1.73□□□□□ -2.13
LINC00643-204ENST00000555934 IGKV2D-29A0A075B6S2 120 aaPredicted RBP1.73□□□□□ -2.13
LINC00643-204ENST00000555934 H3BVH4 76 aa1.73□□□□□ -2.13
LINC00643-204ENST00000555934 MGPP08493 103 aa1.73□□□□□ -2.13
LINC00643-204ENST00000555934 BAGE3Q86Y29 109 aa1.73□□□□□ -2.13
LINC00643-204ENST00000555934 LINC00208Q96KT6 92 aa1.73□□□□□ -2.13
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms