RNA–Protein interactions for RNA: ENST00000555550.1

SCFD1-216, Transcript of sec1 family domain containing 1, humanhuman

TSL 4

Gene SCFD1, Length 541 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-216ENST00000555550 UQCR11O14957 56 aa-0.22□□□□□ -2.44
SCFD1-216ENST00000555550 SPINK1P00995 79 aa-0.22□□□□□ -2.44
SCFD1-216ENST00000555550 GNG4P50150 75 aa-0.22□□□□□ -2.44
SCFD1-216ENST00000555550 UBE2L3P68036 154 aaKnown RBP-0.22□□□□□ -2.44
SCFD1-216ENST00000555550 C14orf144Q96I85 54 aa-0.22□□□□□ -2.44
SCFD1-216ENST00000555550 AQP10Q96PS8 301 aa-0.22□□□□□ -2.44
SCFD1-216ENST00000555550 PRO0255Q9UI72 69 aa-0.22□□□□□ -2.44
SCFD1-216ENST00000555550 V9GYH0 126 aa-0.22□□□□□ -2.44
SCFD1-216ENST00000555550 MAGI1Q96QZ7 1491 aaPredicted RBP-0.22□□□□□ -2.45
SCFD1-216ENST00000555550 PRDM15P57071 1507 aaPredicted RBP-0.23□□□□□ -2.45
SCFD1-216ENST00000555550 FAT1Q14517 4588 aa-0.23□□□□□ -2.45
SCFD1-216ENST00000555550 KDM5AP29375 1690 aaKnown RBP-0.23□□□□□ -2.45
SCFD1-216ENST00000555550 IGLC1P0CG04 106 aa-0.23□□□□□ -2.45
SCFD1-216ENST00000555550 SPRR1AP35321 89 aa-0.23□□□□□ -2.45
SCFD1-216ENST00000555550 TPPP2P59282 170 aa-0.23□□□□□ -2.45
SCFD1-216ENST00000555550 WFDC2Q14508 124 aa-0.23□□□□□ -2.45
SCFD1-216ENST00000555550 BAGE2Q86Y30 109 aa-0.23□□□□□ -2.45
SCFD1-216ENST00000555550 TP53AIP1Q9HCN2 124 aa-0.23□□□□□ -2.45
SCFD1-216ENST00000555550 PLCE1Q9P212 2302 aa-0.23□□□□□ -2.45
SCFD1-216ENST00000555550 KTN1Q86UP2 1357 aaKnown RBP-0.23□□□□□ -2.45
SCFD1-216ENST00000555550 SLIT1O75093 1534 aa-0.23□□□□□ -2.45
SCFD1-216ENST00000555550 NIPBLQ6KC79 2804 aaeCLIP-0.24□□□□□ -2.45
SCFD1-216ENST00000555550 CTXND1A0A1B0GTU2 59 aa-0.24□□□□□ -2.45
SCFD1-216ENST00000555550 LINC00959A0A1B0GUT2 108 aa-0.24□□□□□ -2.45
SCFD1-216ENST00000555550 H3BQ15 152 aa-0.24□□□□□ -2.45
SCFD1-216ENST00000555550 SFT2D2O95562 160 aa-0.24□□□□□ -2.45
SCFD1-216ENST00000555550 PPP3R1P63098 170 aa-0.24□□□□□ -2.45
SCFD1-216ENST00000555550 Q0VG73 95 aa-0.24□□□□□ -2.45
SCFD1-216ENST00000555550 Q6JHZ5 121 aa-0.24□□□□□ -2.45
SCFD1-216ENST00000555550 FAM223AQ8IWN6 122 aa-0.24□□□□□ -2.45
SCFD1-216ENST00000555550 SMIM4Q8WVI0 70 aa-0.24□□□□□ -2.45
SCFD1-216ENST00000555550 LCN9Q8WX39 176 aa-0.24□□□□□ -2.45
SCFD1-216ENST00000555550 SRCAPQ6ZRS2 3230 aa-0.24□□□□□ -2.45
SCFD1-216ENST00000555550 LYSTQ99698 3801 aa-0.25□□□□□ -2.45
SCFD1-216ENST00000555550 NBPF19A0A087WUL8 3843 aa-0.25□□□□□ -2.45
SCFD1-216ENST00000555550 A0A0D9SFI3 127 aa-0.25□□□□□ -2.45
SCFD1-216ENST00000555550 CHKB-CPT1BH3BT56 60 aa-0.25□□□□□ -2.45
SCFD1-216ENST00000555550 ATP5EP56381 51 aaPredicted RBP-0.25□□□□□ -2.45
SCFD1-216ENST00000555550 HSD52Q0P140 79 aa-0.25□□□□□ -2.45
SCFD1-216ENST00000555550 COX17Q14061 63 aa-0.25□□□□□ -2.45
SCFD1-216ENST00000555550 C10orf113Q5VZT2 155 aa-0.25□□□□□ -2.45
SCFD1-216ENST00000555550 TMEM263Q8WUH6 116 aaKnown RBP-0.25□□□□□ -2.45
SCFD1-216ENST00000555550 TMEM203Q969S6 136 aa-0.25□□□□□ -2.45
SCFD1-216ENST00000555550 C1orf167Q5SNV9 1468 aa-0.25□□□□□ -2.45
SCFD1-216ENST00000555550 ERCC6L2Q5T890 1561 aa-0.25□□□□□ -2.45
SCFD1-216ENST00000555550 ABCA3Q99758 1704 aa-0.25□□□□□ -2.45
SCFD1-216ENST00000555550 LRBAP50851 2863 aa-0.26□□□□□ -2.45
SCFD1-216ENST00000555550 PAPPA2Q9BXP8 1791 aa-0.26□□□□□ -2.45
SCFD1-216ENST00000555550 NUP188Q5SRE5 1749 aa-0.26□□□□□ -2.45
SCFD1-216ENST00000555550 KIAA0556O60303 1618 aa-0.26□□□□□ -2.45
SCFD1-216ENST00000555550 TOP2BQ02880 1626 aa-0.26□□□□□ -2.45
SCFD1-216ENST00000555550 NRXN1Q9ULB1 1477 aa-0.26□□□□□ -2.45
SCFD1-216ENST00000555550 PKHD1P08F94 4074 aa-0.26□□□□□ -2.45
SCFD1-216ENST00000555550 hADV29S1A0JD25 119 aa-0.26□□□□□ -2.45
SCFD1-216ENST00000555550 TMEM262E9PQX1 116 aa-0.26□□□□□ -2.45
SCFD1-216ENST00000555550 IFITM1P13164 125 aa-0.26□□□□□ -2.45
SCFD1-216ENST00000555550 DCDP81605 110 aaKnown RBP-0.26□□□□□ -2.45
SCFD1-216ENST00000555550 KRTAP6-1Q3LI64 71 aa-0.26□□□□□ -2.45
SCFD1-216ENST00000555550 TMEM170BQ5T4T1 132 aa-0.26□□□□□ -2.45
SCFD1-216ENST00000555550 Q8IZM0 81 aa-0.26□□□□□ -2.45
SCFD1-216ENST00000555550 NXT2Q9NPJ8 142 aaKnown RBP-0.26□□□□□ -2.45
SCFD1-216ENST00000555550 CUBNO60494 3623 aa-0.26□□□□□ -2.45
SCFD1-216ENST00000555550 PKDREJQ9NTG1 2253 aa-0.26□□□□□ -2.45
SCFD1-216ENST00000555550 ARHGEF12Q9NZN5 1544 aa-0.27□□□□□ -2.45
SCFD1-216ENST00000555550 SPTBN1Q01082 2364 aaKnown RBP-0.27□□□□□ -2.45
SCFD1-216ENST00000555550 PCNX1Q96RV3 2341 aa-0.27□□□□□ -2.45
SCFD1-216ENST00000555550 EYSQ5T1H1 3165 aa-0.27□□□□□ -2.45
SCFD1-216ENST00000555550 LOC285095A0A1B0GVY8 99 aa-0.27□□□□□ -2.45
SCFD1-216ENST00000555550 FAM223BA6NKX1 122 aa-0.27□□□□□ -2.45
SCFD1-216ENST00000555550 H7BZZ5 65 aa-0.27□□□□□ -2.45
SCFD1-216ENST00000555550 M0R3E3 92 aa-0.27□□□□□ -2.45
SCFD1-216ENST00000555550 SPRR1BP22528 89 aa-0.27□□□□□ -2.45
SCFD1-216ENST00000555550 LINC00846Q9NV44 126 aa-0.27□□□□□ -2.45
SCFD1-216ENST00000555550 DCHS2Q6V1P9 2916 aa-0.27□□□□□ -2.45
SCFD1-216ENST00000555550 XRN1Q8IZH2 1706 aaKnown RBP-0.27□□□□□ -2.45
SCFD1-216ENST00000555550 PCNTO95613 3336 aa-0.28□□□□□ -2.45
SCFD1-216ENST00000555550 GAPVD1Q14C86 1478 aa-0.28□□□□□ -2.45
SCFD1-216ENST00000555550 PLEKHH2Q8IVE3 1493 aa-0.28□□□□□ -2.45
SCFD1-216ENST00000555550 TRBV6-1A0A0K0K1D8 114 aa-0.28□□□□□ -2.45
SCFD1-216ENST00000555550 K7EQZ3 153 aa-0.28□□□□□ -2.45
SCFD1-216ENST00000555550 MT-ATP8P03928 68 aa-0.28□□□□□ -2.45
SCFD1-216ENST00000555550 KRTAP20-2Q3LI61 65 aa-0.28□□□□□ -2.45
SCFD1-216ENST00000555550 CGREF1Q99674 301 aa-0.28□□□□□ -2.45
SCFD1-216ENST00000555550 SPCS1Q9Y6A9 102 aa-0.28□□□□□ -2.45
SCFD1-216ENST00000555550 MARF1Q9Y4F3 1742 aaKnown RBP-0.28□□□□□ -2.45
SCFD1-216ENST00000555550 MKI67P46013 3256 aaKnown RBP-0.28□□□□□ -2.45
SCFD1-216ENST00000555550 FAM186AA6NE01 2351 aa-0.28□□□□□ -2.45
SCFD1-216ENST00000555550 FLGP20930 4061 aaPredicted RBP-0.29□□□□□ -2.46
SCFD1-216ENST00000555550 PIGBOS1A0A0B4J2F0 54 aa-0.29□□□□□ -2.46
SCFD1-216ENST00000555550 SNAPC5O75971 98 aa-0.29□□□□□ -2.46
SCFD1-216ENST00000555550 MPC2O95563 127 aa-0.29□□□□□ -2.46
SCFD1-216ENST00000555550 S100A1P23297 94 aa-0.29□□□□□ -2.46
SCFD1-216ENST00000555550 SPRR2BP35325 72 aa-0.29□□□□□ -2.46
SCFD1-216ENST00000555550 DEFB109BQ30KR1 87 aa-0.29□□□□□ -2.46
SCFD1-216ENST00000555550 LINC01600Q96MT4 127 aa-0.29□□□□□ -2.46
SCFD1-216ENST00000555550 CACFD1Q9UGQ2 172 aa-0.29□□□□□ -2.46
SCFD1-216ENST00000555550 GNG8Q9UK08 70 aa-0.29□□□□□ -2.46
SCFD1-216ENST00000555550 ARL2-SNX15V9GYD0 113 aa-0.29□□□□□ -2.46
SCFD1-216ENST00000555550 DOPEY2Q9Y3R5 2298 aa-0.29□□□□□ -2.46
SCFD1-216ENST00000555550 PKD1P98161 4303 aa-0.29□□□□□ -2.46
Retrieved 100 of 20,778 RNA–protein pairs in 40.8 ms