RNA–Protein interactions for RNA: ENST00000554165.1

CCDC88C-208, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 3

Gene CCDC88C, Length 420 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-208ENST00000554165 LCE2CQ5TA81 110 aa7.22□□□□□ -1.25
CCDC88C-208ENST00000554165 LINC01561Q8N1V8 128 aa7.22□□□□□ -1.25
CCDC88C-208ENST00000554165 C7orf33Q8WU49 177 aa7.22□□□□□ -1.25
CCDC88C-208ENST00000554165 GEMIN7Q9H840 131 aaKnown RBP7.22□□□□□ -1.25
CCDC88C-208ENST00000554165 HERVK_113P63121 156 aa7.21□□□□□ -1.26
CCDC88C-208ENST00000554165 PRR3P79522 188 aaKnown RBP7.21□□□□□ -1.26
CCDC88C-208ENST00000554165 GAGE2EQ4V326 116 aa7.21□□□□□ -1.26
CCDC88C-208ENST00000554165 LINC00469Q8N7U9 141 aa7.21□□□□□ -1.26
CCDC88C-208ENST00000554165 GAGE2DQ9UEU5 116 aa7.21□□□□□ -1.26
CCDC88C-208ENST00000554165 PKIGQ9Y2B9 76 aa7.21□□□□□ -1.26
CCDC88C-208ENST00000554165 SMIM1B2RUZ4 78 aa7.2□□□□□ -1.26
CCDC88C-208ENST00000554165 F8WDY8 70 aa7.2□□□□□ -1.26
CCDC88C-208ENST00000554165 PHF5AQ7RTV0 110 aaKnown RBP7.2□□□□□ -1.26
CCDC88C-208ENST00000554165 KRTAP7-1Q8IUC3 87 aa7.2□□□□□ -1.26
CCDC88C-208ENST00000554165 TINCRA0A1B0GVN0 87 aa7.19□□□□□ -1.26
CCDC88C-208ENST00000554165 PRSS2P07478 247 aa7.19□□□□□ -1.26
CCDC88C-208ENST00000554165 SPINK8P0C7L1 97 aa7.19□□□□□ -1.26
CCDC88C-208ENST00000554165 NDUFA6P56556 154 aa7.19□□□□□ -1.26
CCDC88C-208ENST00000554165 SEC11AP67812 179 aa7.19□□□□□ -1.26
CCDC88C-208ENST00000554165 PMVKQ15126 192 aa7.19□□□□□ -1.26
CCDC88C-208ENST00000554165 PDZD11Q5EBL8 140 aa7.19□□□□□ -1.26
CCDC88C-208ENST00000554165 C6orf226Q5I0X4 101 aa7.19□□□□□ -1.26
CCDC88C-208ENST00000554165 IGLV5-45A0A087WSX0 123 aa7.18□□□□□ -1.26
CCDC88C-208ENST00000554165 TRBV30A0A0K0K1B3 111 aa7.18□□□□□ -1.26
CCDC88C-208ENST00000554165 HBDP02042 147 aa7.18□□□□□ -1.26
CCDC88C-208ENST00000554165 TLX1NBP0CAT3 122 aa7.18□□□□□ -1.26
CCDC88C-208ENST00000554165 FAM19A5Q7Z5A7 132 aaPredicted RBP7.18□□□□□ -1.26
CCDC88C-208ENST00000554165 KRTAP11-1Q8IUC1 163 aa7.18□□□□□ -1.26
CCDC88C-208ENST00000554165 Q8IZM0 81 aa7.18□□□□□ -1.26
CCDC88C-208ENST00000554165 PACRGQ96M98 296 aaPredicted RBP7.18□□□□□ -1.26
CCDC88C-208ENST00000554165 LINC01549A6NIU2 74 aa7.17□□□□□ -1.26
CCDC88C-208ENST00000554165 CKS1BP61024 79 aa7.17□□□□□ -1.26
CCDC88C-208ENST00000554165 C9orf129Q5T035 196 aaKnown RBP7.17□□□□□ -1.26
CCDC88C-208ENST00000554165 NDUFC2-KCTD14E9PQ53 114 aa7.16□□□□□ -1.26
CCDC88C-208ENST00000554165 TRGC2P03986 189 aa7.16□□□□□ -1.26
CCDC88C-208ENST00000554165 OXTP01178 125 aa7.15□□□□□ -1.26
CCDC88C-208ENST00000554165 IGLC3P0DOY3 106 aa7.15□□□□□ -1.26
CCDC88C-208ENST00000554165 ZNF22P17026 224 aaPredicted RBP7.15□□□□□ -1.26
CCDC88C-208ENST00000554165 RAB5BP61020 215 aa7.15□□□□□ -1.26
CCDC88C-208ENST00000554165 COX7B2Q8TF08 81 aa7.15□□□□□ -1.26
CCDC88C-208ENST00000554165 PSORS1C2Q9UIG4 136 aa7.15□□□□□ -1.26
CCDC88C-208ENST00000554165 COLCA2A8K830 154 aa7.14□□□□□ -1.27
CCDC88C-208ENST00000554165 F8VRH5 84 aa7.14□□□□□ -1.27
CCDC88C-208ENST00000554165 SCO1O75880 301 aa7.14□□□□□ -1.27
CCDC88C-208ENST00000554165 MT1HL1P0DM35 61 aa7.14□□□□□ -1.27
CCDC88C-208ENST00000554165 SERTAD4-AS1Q5TG53 156 aa7.14□□□□□ -1.27
CCDC88C-208ENST00000554165 BAGE3Q86Y29 109 aa7.14□□□□□ -1.27
CCDC88C-208ENST00000554165 FAM19A2Q8N3H0 131 aa7.14□□□□□ -1.27
CCDC88C-208ENST00000554165 XAGE1AQ9HD64 81 aa7.14□□□□□ -1.27
CCDC88C-208ENST00000554165 C11orf86A6NJI1 115 aa7.13□□□□□ -1.27
CCDC88C-208ENST00000554165 ATP5LO75964 103 aa7.13□□□□□ -1.27
CCDC88C-208ENST00000554165 LINC00310P59036 64 aa7.13□□□□□ -1.27
CCDC88C-208ENST00000554165 SRSF9Q13242 221 aaKnown RBP eCLIP7.13□□□□□ -1.27
CCDC88C-208ENST00000554165 NUPR1O60356 82 aa7.12□□□□□ -1.27
CCDC88C-208ENST00000554165 CHCHD1Q96BP2 118 aaKnown RBP7.12□□□□□ -1.27
CCDC88C-208ENST00000554165 IGLV5-39A0A0G2JS06 123 aa7.11□□□□□ -1.27
CCDC88C-208ENST00000554165 H3BRM9 83 aa7.11□□□□□ -1.27
CCDC88C-208ENST00000554165 M0QXV9 152 aa7.11□□□□□ -1.27
CCDC88C-208ENST00000554165 SERF1AO75920 110 aa7.11□□□□□ -1.27
CCDC88C-208ENST00000554165 IFI27L1Q96BM0 104 aa7.11□□□□□ -1.27
CCDC88C-208ENST00000554165 CXCL5P42830 114 aa7.1□□□□□ -1.27
CCDC88C-208ENST00000554165 ODF1Q14990 250 aa7.1□□□□□ -1.27
CCDC88C-208ENST00000554165 C1orf137Q5JT78 98 aa7.1□□□□□ -1.27
CCDC88C-208ENST00000554165 TMEM170BQ5T4T1 132 aa7.1□□□□□ -1.27
CCDC88C-208ENST00000554165 CHTOPQ9Y3Y2 248 aaKnown RBP7.1□□□□□ -1.27
CCDC88C-208ENST00000554165 HSBP1O75506 76 aa7.08□□□□□ -1.28
CCDC88C-208ENST00000554165 SPINK6Q6UWN8 80 aa7.08□□□□□ -1.28
CCDC88C-208ENST00000554165 ZNF625Q96I27 306 aaPredicted RBP7.08□□□□□ -1.28
CCDC88C-208ENST00000554165 C22orf24Q9Y442 160 aa7.08□□□□□ -1.28
CCDC88C-208ENST00000554165 TNXBP22105 4242 aa7.07□□□□□ -1.28
CCDC88C-208ENST00000554165 TRAV12-1A0A0B4J245 112 aa7.07□□□□□ -1.28
CCDC88C-208ENST00000554165 H0Y8G0 127 aa7.07□□□□□ -1.28
CCDC88C-208ENST00000554165 PFN2P35080 140 aa7.07□□□□□ -1.28
CCDC88C-208ENST00000554165 UBE2BP63146 152 aa7.07□□□□□ -1.28
CCDC88C-208ENST00000554165 HMCN2Q8NDA2 5059 aa7.06□□□□□ -1.28
CCDC88C-208ENST00000554165 IGLV7-43P04211 117 aa7.06□□□□□ -1.28
CCDC88C-208ENST00000554165 FABP4P15090 132 aa7.06□□□□□ -1.28
CCDC88C-208ENST00000554165 LORP23490 312 aaPredicted RBP7.06□□□□□ -1.28
CCDC88C-208ENST00000554165 LINC01600Q96MT4 127 aa7.06□□□□□ -1.28
CCDC88C-208ENST00000554165 TMEM223A0PJW6 202 aa7.05□□□□□ -1.28
CCDC88C-208ENST00000554165 GAGE10A6NGK3 116 aa7.04□□□□□ -1.28
CCDC88C-208ENST00000554165 Q8NDZ9 215 aa7.04□□□□□ -1.28
CCDC88C-208ENST00000554165 PMCHL2Q9BQD1 86 aa7.04□□□□□ -1.28
CCDC88C-208ENST00000554165 ERG28Q9UKR5 140 aa7.04□□□□□ -1.28
CCDC88C-208ENST00000554165 RPL37AP8A6NKH3 93 aa7.03□□□□□ -1.28
CCDC88C-208ENST00000554165 LEPROTL1O95214 131 aa7.03□□□□□ -1.28
CCDC88C-208ENST00000554165 KRTAP10-8P60410 259 aa7.03□□□□□ -1.28
CCDC88C-208ENST00000554165 MRPL55Q7Z7F7 128 aaKnown RBP7.03□□□□□ -1.28
CCDC88C-208ENST00000554165 SND1-IT1Q9HBX3 110 aa7.03□□□□□ -1.28
CCDC88C-208ENST00000554165 A0A0U1RRA0 63 aa7.02□□□□□ -1.29
CCDC88C-208ENST00000554165 REG3GQ6UW15 175 aa7.02□□□□□ -1.29
CCDC88C-208ENST00000554165 LINC00167Q96N53 147 aa7.02□□□□□ -1.29
CCDC88C-208ENST00000554165 HIST1H2BKO60814 126 aa7.01□□□□□ -1.29
CCDC88C-208ENST00000554165 HIST1H2BJP06899 126 aa7.01□□□□□ -1.29
CCDC88C-208ENST00000554165 HIST1H2BOP23527 126 aa7.01□□□□□ -1.29
CCDC88C-208ENST00000554165 HIST1H2BBP33778 126 aa7.01□□□□□ -1.29
CCDC88C-208ENST00000554165 HIST1H2BDP58876 126 aa7.01□□□□□ -1.29
CCDC88C-208ENST00000554165 HIST1H2BCP62807 126 aa7.01□□□□□ -1.29
CCDC88C-208ENST00000554165 HIST2H2BEQ16778 126 aa7.01□□□□□ -1.29
CCDC88C-208ENST00000554165 LBHQ53QV2 105 aaPredicted RBP7.01□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms