RNA–Protein interactions for RNA: ENST00000551486.1

LIMA1-207, Transcript of LIM domain and actin binding 1, humanhuman

TSL 2

Gene LIMA1, Length 587 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-207ENST00000551486 TRBV6-1A0A0K0K1D8 114 aa1.23□□□□□ -2.21
LIMA1-207ENST00000551486 LCE6AA0A183 80 aa1.23□□□□□ -2.21
LIMA1-207ENST00000551486 LINC00959A0A1B0GUT2 108 aa1.23□□□□□ -2.21
LIMA1-207ENST00000551486 CPSF4LA6NMK7 179 aaKnown RBP1.23□□□□□ -2.21
LIMA1-207ENST00000551486 ZNF861PO60384 105 aa1.23□□□□□ -2.21
LIMA1-207ENST00000551486 PRB1P04280 392 aa1.23□□□□□ -2.21
LIMA1-207ENST00000551486 CCL3L1P16619 93 aa1.23□□□□□ -2.21
LIMA1-207ENST00000551486 HAMPP81172 84 aa1.23□□□□□ -2.21
LIMA1-207ENST00000551486 SPINT4Q6UDR6 99 aa1.23□□□□□ -2.21
LIMA1-207ENST00000551486 Q86TA4 180 aa1.23□□□□□ -2.21
LIMA1-207ENST00000551486 GAFA1Q96PS6 74 aa1.23□□□□□ -2.21
LIMA1-207ENST00000551486 WFDC10AQ9H1F0 79 aa1.23□□□□□ -2.21
LIMA1-207ENST00000551486 ATAD5Q96QE3 1844 aa1.23□□□□□ -2.21
LIMA1-207ENST00000551486 ZFHX3Q15911 3703 aa1.23□□□□□ -2.21
LIMA1-207ENST00000551486 LOC285556D6RIA3 1793 aa1.23□□□□□ -2.21
LIMA1-207ENST00000551486 LAMB2P55268 1798 aa1.23□□□□□ -2.21
LIMA1-207ENST00000551486 CHD6Q8TD26 2715 aa1.23□□□□□ -2.21
LIMA1-207ENST00000551486 PTPRSQ13332 1948 aa1.23□□□□□ -2.21
LIMA1-207ENST00000551486 GBF1Q92538 1859 aa1.22□□□□□ -2.21
LIMA1-207ENST00000551486 ALKQ9UM73 1620 aa1.22□□□□□ -2.21
LIMA1-207ENST00000551486 NCOA6Q14686 2063 aaPredicted RBP1.22□□□□□ -2.21
LIMA1-207ENST00000551486 LTBP2Q14767 1821 aa1.22□□□□□ -2.21
LIMA1-207ENST00000551486 LAMB1P07942 1786 aa1.22□□□□□ -2.21
LIMA1-207ENST00000551486 SZT2Q5T011 3432 aa1.22□□□□□ -2.21
LIMA1-207ENST00000551486 NCR3O14931 201 aa1.22□□□□□ -2.21
LIMA1-207ENST00000551486 NDUFB1O75438 58 aa1.22□□□□□ -2.21
LIMA1-207ENST00000551486 IGLV3-1P01715 115 aa1.22□□□□□ -2.21
LIMA1-207ENST00000551486 IAPPP10997 89 aa1.22□□□□□ -2.21
LIMA1-207ENST00000551486 CCL18P55774 89 aa1.22□□□□□ -2.21
LIMA1-207ENST00000551486 DEFB112Q30KQ8 113 aa1.22□□□□□ -2.21
LIMA1-207ENST00000551486 LINC00322Q6ZN03 302 aaPredicted RBP1.22□□□□□ -2.21
LIMA1-207ENST00000551486 SPRR4Q96PI1 79 aa1.22□□□□□ -2.21
LIMA1-207ENST00000551486 AMELXQ99217 191 aa1.22□□□□□ -2.21
LIMA1-207ENST00000551486 LCE3DQ9BYE3 92 aa1.22□□□□□ -2.21
LIMA1-207ENST00000551486 TMEM167BQ9NRX6 74 aa1.22□□□□□ -2.21
LIMA1-207ENST00000551486 PKD1L3Q7Z443 1732 aa1.22□□□□□ -2.21
LIMA1-207ENST00000551486 UBR1Q8IWV7 1749 aa1.22□□□□□ -2.21
LIMA1-207ENST00000551486 UBR3Q6ZT12 1888 aa1.22□□□□□ -2.21
LIMA1-207ENST00000551486 AFDNP55196 1824 aaKnown RBP1.22□□□□□ -2.21
LIMA1-207ENST00000551486 SPAG17Q6Q759 2223 aa1.21□□□□□ -2.21
LIMA1-207ENST00000551486 UNC13CQ8NB66 2214 aa1.21□□□□□ -2.21
LIMA1-207ENST00000551486 TNRC18O15417 2968 aaPredicted RBP1.21□□□□□ -2.22
LIMA1-207ENST00000551486 LTBP1Q14766 1721 aa1.21□□□□□ -2.22
LIMA1-207ENST00000551486 COL24A1Q17RW2 1714 aa1.21□□□□□ -2.22
LIMA1-207ENST00000551486 FMN2Q9NZ56 1722 aa1.21□□□□□ -2.22
LIMA1-207ENST00000551486 NUP214P35658 2090 aaPredicted RBP1.21□□□□□ -2.22
LIMA1-207ENST00000551486 NYNRINQ9P2P1 1898 aaKnown RBP1.21□□□□□ -2.22
LIMA1-207ENST00000551486 TRGV4A0A0C4DH28 118 aa1.21□□□□□ -2.22
LIMA1-207ENST00000551486 JMJD7-PLA2G4BH0Y9G9 81 aa1.21□□□□□ -2.22
LIMA1-207ENST00000551486 H0Y9P7 68 aa1.21□□□□□ -2.22
LIMA1-207ENST00000551486 UQCR11O14957 56 aa1.21□□□□□ -2.22
LIMA1-207ENST00000551486 MGPP08493 103 aa1.21□□□□□ -2.22
LIMA1-207ENST00000551486 PDE6GP18545 87 aa1.21□□□□□ -2.22
LIMA1-207ENST00000551486 RPL38P63173 70 aaKnown RBP1.21□□□□□ -2.22
LIMA1-207ENST00000551486 TFF3Q07654 80 aa1.21□□□□□ -2.22
LIMA1-207ENST00000551486 PDE6HQ13956 83 aa1.21□□□□□ -2.22
LIMA1-207ENST00000551486 ST20-AS1Q8NBB2 130 aa1.21□□□□□ -2.22
LIMA1-207ENST00000551486 TTTY10Q9BZA0 68 aa1.21□□□□□ -2.22
LIMA1-207ENST00000551486 LINC00472Q9H8W2 130 aa1.21□□□□□ -2.22
LIMA1-207ENST00000551486 R4GN34 69 aa1.21□□□□□ -2.22
LIMA1-207ENST00000551486 ARFGEF1Q9Y6D6 1849 aa1.21□□□□□ -2.22
LIMA1-207ENST00000551486 CPAMD8Q8IZJ3 1885 aa1.2□□□□□ -2.22
LIMA1-207ENST00000551486 FREM1Q5H8C1 2179 aa1.2□□□□□ -2.22
LIMA1-207ENST00000551486 ARFGEF3Q5TH69 2177 aa1.2□□□□□ -2.22
LIMA1-207ENST00000551486 DOCK10Q96BY6 2186 aa1.2□□□□□ -2.22
LIMA1-207ENST00000551486 A0A087WTM6 91 aa1.2□□□□□ -2.22
LIMA1-207ENST00000551486 FAM168BA1KXE4 195 aa1.2□□□□□ -2.22
LIMA1-207ENST00000551486 H0YGX0 51 aa1.2□□□□□ -2.22
LIMA1-207ENST00000551486 CRIP1P50238 77 aa1.2□□□□□ -2.22
LIMA1-207ENST00000551486 Q6ZTI0 123 aa1.2□□□□□ -2.22
LIMA1-207ENST00000551486 COA5Q86WW8 74 aa1.2□□□□□ -2.22
LIMA1-207ENST00000551486 ARHGAP5-AS1Q96IT6 56 aa1.2□□□□□ -2.22
LIMA1-207ENST00000551486 ANAPC11Q9NYG5 84 aa1.2□□□□□ -2.22
LIMA1-207ENST00000551486 ARHGAP32A7KAX9 2087 aa1.2□□□□□ -2.22
LIMA1-207ENST00000551486 SAMD9LQ8IVG5 1584 aa1.2□□□□□ -2.22
LIMA1-207ENST00000551486 FBN3Q75N90 2809 aa1.2□□□□□ -2.22
LIMA1-207ENST00000551486 GCC2Q8IWJ2 1684 aa1.2□□□□□ -2.22
LIMA1-207ENST00000551486 COL11A1P12107 1806 aaPredicted RBP1.19□□□□□ -2.22
LIMA1-207ENST00000551486 TUBGCP6Q96RT7 1819 aa1.19□□□□□ -2.22
LIMA1-207ENST00000551486 IGLV4-60A0A075B6I1 120 aa1.19□□□□□ -2.22
LIMA1-207ENST00000551486 TRGV2A0A075B6R0 118 aa1.19□□□□□ -2.22
LIMA1-207ENST00000551486 TRGV1A0A0A0MS02 117 aa1.19□□□□□ -2.22
LIMA1-207ENST00000551486 H3BSH0 61 aa1.19□□□□□ -2.22
LIMA1-207ENST00000551486 NDUFA4O00483 81 aa1.19□□□□□ -2.22
LIMA1-207ENST00000551486 FXYD4P59646 89 aa1.19□□□□□ -2.22
LIMA1-207ENST00000551486 CACNA1DQ01668 2161 aa1.19□□□□□ -2.22
LIMA1-207ENST00000551486 KRTAP21-2Q3LI59 83 aa1.19□□□□□ -2.22
LIMA1-207ENST00000551486 LINC00304Q8N9R0 145 aa1.19□□□□□ -2.22
LIMA1-207ENST00000551486 PATE1Q8WXA2 126 aa1.19□□□□□ -2.22
LIMA1-207ENST00000551486 Q96NJ1 140 aa1.19□□□□□ -2.22
LIMA1-207ENST00000551486 PRO2289Q9P1D8 64 aa1.19□□□□□ -2.22
LIMA1-207ENST00000551486 BRWD3Q6RI45 1802 aa1.19□□□□□ -2.22
LIMA1-207ENST00000551486 C5P01031 1676 aa1.19□□□□□ -2.22
LIMA1-207ENST00000551486 VCANP13611 3396 aa1.19□□□□□ -2.22
LIMA1-207ENST00000551486 COL14A1Q05707 1796 aaKnown RBP1.19□□□□□ -2.22
LIMA1-207ENST00000551486 ANKRD17O75179 2603 aaKnown RBP1.19□□□□□ -2.22
LIMA1-207ENST00000551486 DEPDC5O75140 1603 aa1.18□□□□□ -2.22
LIMA1-207ENST00000551486 NRXN3Q9Y4C0 1643 aa1.18□□□□□ -2.22
LIMA1-207ENST00000551486 ALPK2Q86TB3 2170 aa1.18□□□□□ -2.22
LIMA1-207ENST00000551486 UTRNP46939 3433 aa1.18□□□□□ -2.22
Retrieved 100 of 20,778 RNA–protein pairs in 49.5 ms